Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04090

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04089 and MPMX20_04090 are separated by 15 nucleotidesMPMX20_04090 and MPMX20_04091 are separated by 96 nucleotidesMPMX20_04091 and MPMX20_04092 are separated by 19 nucleotidesMPMX20_04092 and MPMX20_04093 are separated by 256 nucleotides MPMX20_04089: MPMX20_04089 - GTPase ObgE/CgtA, at 4,286,742 to 4,287,914 _04089 MPMX20_04090: MPMX20_04090 - putative inner membrane transporter YhbE, at 4,287,930 to 4,288,895 _04090 MPMX20_04091: MPMX20_04091 - 50S ribosomal protein L27, at 4,288,992 to 4,289,249 _04091 MPMX20_04092: MPMX20_04092 - 50S ribosomal protein L21, at 4,289,269 to 4,289,580 _04092 MPMX20_04093: MPMX20_04093 - Octaprenyl diphosphate synthase, at 4,289,837 to 4,290,808 _04093 Position (kb) 4287 4288 4289Strain fitness (log2 ratio) -2 -1 0 1at 4287.950 kb on - strandat 4288.079 kb on - strand, within MPMX20_04090at 4288.155 kb on - strand, within MPMX20_04090at 4288.160 kb on - strand, within MPMX20_04090at 4288.160 kb on - strand, within MPMX20_04090at 4288.162 kb on - strand, within MPMX20_04090at 4288.390 kb on - strand, within MPMX20_04090at 4288.425 kb on - strand, within MPMX20_04090at 4288.430 kb on - strand, within MPMX20_04090at 4288.470 kb on - strand, within MPMX20_04090at 4288.479 kb on - strand, within MPMX20_04090at 4288.606 kb on - strand, within MPMX20_04090at 4288.642 kb on - strand, within MPMX20_04090at 4288.684 kb on - strand, within MPMX20_04090at 4288.710 kb on - strand, within MPMX20_04090at 4288.719 kb on - strand, within MPMX20_04090at 4288.757 kb on - strand, within MPMX20_04090at 4289.721 kb on + strandat 4289.727 kb on + strandat 4289.775 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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4,287,950 - -0.8
4,288,079 - MPMX20_04090 0.15 -1.5
4,288,155 - MPMX20_04090 0.23 -0.8
4,288,160 - MPMX20_04090 0.24 +1.5
4,288,160 - MPMX20_04090 0.24 -0.6
4,288,162 - MPMX20_04090 0.24 -2.1
4,288,390 - MPMX20_04090 0.48 -2.3
4,288,425 - MPMX20_04090 0.51 +1.5
4,288,430 - MPMX20_04090 0.52 -0.5
4,288,470 - MPMX20_04090 0.56 -0.7
4,288,479 - MPMX20_04090 0.57 -2.6
4,288,606 - MPMX20_04090 0.70 -0.8
4,288,642 - MPMX20_04090 0.74 +0.2
4,288,684 - MPMX20_04090 0.78 +0.0
4,288,710 - MPMX20_04090 0.81 -2.4
4,288,719 - MPMX20_04090 0.82 +0.7
4,288,757 - MPMX20_04090 0.86 -1.7
4,289,721 + +0.6
4,289,727 + +0.4
4,289,775 + -0.8

Or see this region's nucleotide sequence