Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04089 and MPMX20_04090 are separated by 15 nucleotides MPMX20_04090 and MPMX20_04091 are separated by 96 nucleotides MPMX20_04091 and MPMX20_04092 are separated by 19 nucleotides MPMX20_04092 and MPMX20_04093 are separated by 256 nucleotides
MPMX20_04089: MPMX20_04089 - GTPase ObgE/CgtA, at 4,286,742 to 4,287,914
_04089
MPMX20_04090: MPMX20_04090 - putative inner membrane transporter YhbE, at 4,287,930 to 4,288,895
_04090
MPMX20_04091: MPMX20_04091 - 50S ribosomal protein L27, at 4,288,992 to 4,289,249
_04091
MPMX20_04092: MPMX20_04092 - 50S ribosomal protein L21, at 4,289,269 to 4,289,580
_04092
MPMX20_04093: MPMX20_04093 - Octaprenyl diphosphate synthase, at 4,289,837 to 4,290,808
_04093
Position (kb)
4287
4288
4289 Strain fitness (log2 ratio)
-2
-1
0
1 at 4287.950 kb on - strand at 4288.079 kb on - strand, within MPMX20_04090 at 4288.155 kb on - strand, within MPMX20_04090 at 4288.160 kb on - strand, within MPMX20_04090 at 4288.160 kb on - strand, within MPMX20_04090 at 4288.162 kb on - strand, within MPMX20_04090 at 4288.390 kb on - strand, within MPMX20_04090 at 4288.425 kb on - strand, within MPMX20_04090 at 4288.430 kb on - strand, within MPMX20_04090 at 4288.470 kb on - strand, within MPMX20_04090 at 4288.479 kb on - strand, within MPMX20_04090 at 4288.606 kb on - strand, within MPMX20_04090 at 4288.642 kb on - strand, within MPMX20_04090 at 4288.684 kb on - strand, within MPMX20_04090 at 4288.710 kb on - strand, within MPMX20_04090 at 4288.719 kb on - strand, within MPMX20_04090 at 4288.757 kb on - strand, within MPMX20_04090 at 4289.721 kb on + strand at 4289.727 kb on + strand at 4289.775 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 4,287,950 - -0.8 4,288,079 - MPMX20_04090 0.15 -1.5 4,288,155 - MPMX20_04090 0.23 -0.8 4,288,160 - MPMX20_04090 0.24 +1.5 4,288,160 - MPMX20_04090 0.24 -0.6 4,288,162 - MPMX20_04090 0.24 -2.1 4,288,390 - MPMX20_04090 0.48 -2.3 4,288,425 - MPMX20_04090 0.51 +1.5 4,288,430 - MPMX20_04090 0.52 -0.5 4,288,470 - MPMX20_04090 0.56 -0.7 4,288,479 - MPMX20_04090 0.57 -2.6 4,288,606 - MPMX20_04090 0.70 -0.8 4,288,642 - MPMX20_04090 0.74 +0.2 4,288,684 - MPMX20_04090 0.78 +0.0 4,288,710 - MPMX20_04090 0.81 -2.4 4,288,719 - MPMX20_04090 0.82 +0.7 4,288,757 - MPMX20_04090 0.86 -1.7 4,289,721 + +0.6 4,289,727 + +0.4 4,289,775 + -0.8
Or see this region's nucleotide sequence