Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04085

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04083 and MPMX20_04084 are separated by 88 nucleotidesMPMX20_04084 and MPMX20_04085 are separated by 151 nucleotidesMPMX20_04085 and MPMX20_04086 are separated by 227 nucleotides MPMX20_04083: MPMX20_04083 - Ribosomal RNA large subunit methyltransferase E, at 4,281,668 to 4,282,294 _04083 MPMX20_04084: MPMX20_04084 - RNA-binding protein YhbY, at 4,282,383 to 4,282,715 _04084 MPMX20_04085: MPMX20_04085 - Transcription elongation factor GreA, at 4,282,867 to 4,283,343 _04085 MPMX20_04086: MPMX20_04086 - D-alanyl-D-alanine carboxypeptidase DacB, at 4,283,571 to 4,285,004 _04086 Position (kb) 4282 4283 4284Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4282.375 kb on - strandat 4282.390 kb on - strandat 4282.390 kb on - strandat 4282.451 kb on + strand, within MPMX20_04084at 4282.459 kb on - strand, within MPMX20_04084at 4282.459 kb on - strand, within MPMX20_04084at 4282.485 kb on - strand, within MPMX20_04084at 4282.485 kb on - strand, within MPMX20_04084at 4282.485 kb on - strand, within MPMX20_04084at 4282.485 kb on - strand, within MPMX20_04084at 4282.492 kb on - strand, within MPMX20_04084at 4282.549 kb on + strand, within MPMX20_04084at 4282.622 kb on - strand, within MPMX20_04084at 4282.642 kb on + strand, within MPMX20_04084at 4282.647 kb on - strand, within MPMX20_04084at 4282.681 kb on + strand, within MPMX20_04084at 4282.689 kb on - strandat 4282.689 kb on - strandat 4282.689 kb on - strandat 4282.689 kb on - strandat 4282.931 kb on + strand, within MPMX20_04085at 4282.931 kb on + strand, within MPMX20_04085at 4282.944 kb on - strand, within MPMX20_04085at 4282.965 kb on + strand, within MPMX20_04085at 4283.032 kb on + strand, within MPMX20_04085at 4283.040 kb on - strand, within MPMX20_04085at 4283.040 kb on - strand, within MPMX20_04085at 4283.050 kb on + strand, within MPMX20_04085at 4283.070 kb on + strand, within MPMX20_04085at 4283.125 kb on - strand, within MPMX20_04085at 4283.171 kb on + strand, within MPMX20_04085at 4283.200 kb on + strand, within MPMX20_04085at 4283.295 kb on - strand, within MPMX20_04085at 4283.304 kb on + strandat 4283.388 kb on - strandat 4283.490 kb on + strandat 4283.490 kb on + strandat 4283.495 kb on + strandat 4283.519 kb on + strandat 4283.519 kb on + strandat 4283.521 kb on + strandat 4283.529 kb on - strandat 4283.608 kb on + strandat 4283.608 kb on + strandat 4283.705 kb on - strandat 4283.718 kb on - strand, within MPMX20_04086at 4283.755 kb on + strand, within MPMX20_04086at 4283.797 kb on - strand, within MPMX20_04086at 4283.797 kb on - strand, within MPMX20_04086at 4283.900 kb on - strand, within MPMX20_04086at 4284.034 kb on + strand, within MPMX20_04086at 4284.052 kb on - strand, within MPMX20_04086at 4284.078 kb on + strand, within MPMX20_04086at 4284.147 kb on + strand, within MPMX20_04086at 4284.188 kb on - strand, within MPMX20_04086at 4284.321 kb on + strand, within MPMX20_04086at 4284.321 kb on + strand, within MPMX20_04086

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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4,282,375 - -0.0
4,282,390 - +0.2
4,282,390 - +1.0
4,282,451 + MPMX20_04084 0.20 -0.5
4,282,459 - MPMX20_04084 0.23 +1.5
4,282,459 - MPMX20_04084 0.23 -1.0
4,282,485 - MPMX20_04084 0.31 +1.8
4,282,485 - MPMX20_04084 0.31 +0.0
4,282,485 - MPMX20_04084 0.31 -2.7
4,282,485 - MPMX20_04084 0.31 +0.6
4,282,492 - MPMX20_04084 0.33 +0.9
4,282,549 + MPMX20_04084 0.50 -0.8
4,282,622 - MPMX20_04084 0.72 +0.3
4,282,642 + MPMX20_04084 0.78 -1.5
4,282,647 - MPMX20_04084 0.79 -0.4
4,282,681 + MPMX20_04084 0.89 -0.1
4,282,689 - -2.0
4,282,689 - -1.1
4,282,689 - -0.6
4,282,689 - +0.8
4,282,931 + MPMX20_04085 0.13 -1.3
4,282,931 + MPMX20_04085 0.13 +0.9
4,282,944 - MPMX20_04085 0.16 -0.8
4,282,965 + MPMX20_04085 0.21 -1.5
4,283,032 + MPMX20_04085 0.35 +1.5
4,283,040 - MPMX20_04085 0.36 -0.3
4,283,040 - MPMX20_04085 0.36 -0.6
4,283,050 + MPMX20_04085 0.38 -0.8
4,283,070 + MPMX20_04085 0.43 -3.2
4,283,125 - MPMX20_04085 0.54 -2.9
4,283,171 + MPMX20_04085 0.64 +2.5
4,283,200 + MPMX20_04085 0.70 +1.0
4,283,295 - MPMX20_04085 0.90 -1.1
4,283,304 + -0.8
4,283,388 - -2.0
4,283,490 + -1.4
4,283,490 + -1.1
4,283,495 + -1.3
4,283,519 + +0.7
4,283,519 + -1.0
4,283,521 + -1.7
4,283,529 - -0.8
4,283,608 + +0.4
4,283,608 + +0.7
4,283,705 - +1.1
4,283,718 - MPMX20_04086 0.10 -0.2
4,283,755 + MPMX20_04086 0.13 -2.3
4,283,797 - MPMX20_04086 0.16 -0.9
4,283,797 - MPMX20_04086 0.16 -0.6
4,283,900 - MPMX20_04086 0.23 -0.9
4,284,034 + MPMX20_04086 0.32 +0.6
4,284,052 - MPMX20_04086 0.34 +1.3
4,284,078 + MPMX20_04086 0.35 +2.1
4,284,147 + MPMX20_04086 0.40 -1.8
4,284,188 - MPMX20_04086 0.43 +0.3
4,284,321 + MPMX20_04086 0.52 -3.4
4,284,321 + MPMX20_04086 0.52 -0.0

Or see this region's nucleotide sequence