Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04083 and MPMX20_04084 are separated by 88 nucleotides MPMX20_04084 and MPMX20_04085 are separated by 151 nucleotides MPMX20_04085 and MPMX20_04086 are separated by 227 nucleotides
MPMX20_04083: MPMX20_04083 - Ribosomal RNA large subunit methyltransferase E, at 4,281,668 to 4,282,294
_04083
MPMX20_04084: MPMX20_04084 - RNA-binding protein YhbY, at 4,282,383 to 4,282,715
_04084
MPMX20_04085: MPMX20_04085 - Transcription elongation factor GreA, at 4,282,867 to 4,283,343
_04085
MPMX20_04086: MPMX20_04086 - D-alanyl-D-alanine carboxypeptidase DacB, at 4,283,571 to 4,285,004
_04086
Position (kb)
4282
4283
4284 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4282.375 kb on - strand at 4282.390 kb on - strand at 4282.390 kb on - strand at 4282.451 kb on + strand, within MPMX20_04084 at 4282.459 kb on - strand, within MPMX20_04084 at 4282.459 kb on - strand, within MPMX20_04084 at 4282.485 kb on - strand, within MPMX20_04084 at 4282.485 kb on - strand, within MPMX20_04084 at 4282.485 kb on - strand, within MPMX20_04084 at 4282.485 kb on - strand, within MPMX20_04084 at 4282.492 kb on - strand, within MPMX20_04084 at 4282.549 kb on + strand, within MPMX20_04084 at 4282.622 kb on - strand, within MPMX20_04084 at 4282.642 kb on + strand, within MPMX20_04084 at 4282.647 kb on - strand, within MPMX20_04084 at 4282.681 kb on + strand, within MPMX20_04084 at 4282.689 kb on - strand at 4282.689 kb on - strand at 4282.689 kb on - strand at 4282.689 kb on - strand at 4282.931 kb on + strand, within MPMX20_04085 at 4282.931 kb on + strand, within MPMX20_04085 at 4282.944 kb on - strand, within MPMX20_04085 at 4282.965 kb on + strand, within MPMX20_04085 at 4283.032 kb on + strand, within MPMX20_04085 at 4283.040 kb on - strand, within MPMX20_04085 at 4283.040 kb on - strand, within MPMX20_04085 at 4283.050 kb on + strand, within MPMX20_04085 at 4283.070 kb on + strand, within MPMX20_04085 at 4283.125 kb on - strand, within MPMX20_04085 at 4283.171 kb on + strand, within MPMX20_04085 at 4283.200 kb on + strand, within MPMX20_04085 at 4283.295 kb on - strand, within MPMX20_04085 at 4283.304 kb on + strand at 4283.388 kb on - strand at 4283.490 kb on + strand at 4283.490 kb on + strand at 4283.495 kb on + strand at 4283.519 kb on + strand at 4283.519 kb on + strand at 4283.521 kb on + strand at 4283.529 kb on - strand at 4283.608 kb on + strand at 4283.608 kb on + strand at 4283.705 kb on - strand at 4283.718 kb on - strand, within MPMX20_04086 at 4283.755 kb on + strand, within MPMX20_04086 at 4283.797 kb on - strand, within MPMX20_04086 at 4283.797 kb on - strand, within MPMX20_04086 at 4283.900 kb on - strand, within MPMX20_04086 at 4284.034 kb on + strand, within MPMX20_04086 at 4284.052 kb on - strand, within MPMX20_04086 at 4284.078 kb on + strand, within MPMX20_04086 at 4284.147 kb on + strand, within MPMX20_04086 at 4284.188 kb on - strand, within MPMX20_04086 at 4284.321 kb on + strand, within MPMX20_04086 at 4284.321 kb on + strand, within MPMX20_04086
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 4,282,375 - -0.0 4,282,390 - +0.2 4,282,390 - +1.0 4,282,451 + MPMX20_04084 0.20 -0.5 4,282,459 - MPMX20_04084 0.23 +1.5 4,282,459 - MPMX20_04084 0.23 -1.0 4,282,485 - MPMX20_04084 0.31 +1.8 4,282,485 - MPMX20_04084 0.31 +0.0 4,282,485 - MPMX20_04084 0.31 -2.7 4,282,485 - MPMX20_04084 0.31 +0.6 4,282,492 - MPMX20_04084 0.33 +0.9 4,282,549 + MPMX20_04084 0.50 -0.8 4,282,622 - MPMX20_04084 0.72 +0.3 4,282,642 + MPMX20_04084 0.78 -1.5 4,282,647 - MPMX20_04084 0.79 -0.4 4,282,681 + MPMX20_04084 0.89 -0.1 4,282,689 - -2.0 4,282,689 - -1.1 4,282,689 - -0.6 4,282,689 - +0.8 4,282,931 + MPMX20_04085 0.13 -1.3 4,282,931 + MPMX20_04085 0.13 +0.9 4,282,944 - MPMX20_04085 0.16 -0.8 4,282,965 + MPMX20_04085 0.21 -1.5 4,283,032 + MPMX20_04085 0.35 +1.5 4,283,040 - MPMX20_04085 0.36 -0.3 4,283,040 - MPMX20_04085 0.36 -0.6 4,283,050 + MPMX20_04085 0.38 -0.8 4,283,070 + MPMX20_04085 0.43 -3.2 4,283,125 - MPMX20_04085 0.54 -2.9 4,283,171 + MPMX20_04085 0.64 +2.5 4,283,200 + MPMX20_04085 0.70 +1.0 4,283,295 - MPMX20_04085 0.90 -1.1 4,283,304 + -0.8 4,283,388 - -2.0 4,283,490 + -1.4 4,283,490 + -1.1 4,283,495 + -1.3 4,283,519 + +0.7 4,283,519 + -1.0 4,283,521 + -1.7 4,283,529 - -0.8 4,283,608 + +0.4 4,283,608 + +0.7 4,283,705 - +1.1 4,283,718 - MPMX20_04086 0.10 -0.2 4,283,755 + MPMX20_04086 0.13 -2.3 4,283,797 - MPMX20_04086 0.16 -0.9 4,283,797 - MPMX20_04086 0.16 -0.6 4,283,900 - MPMX20_04086 0.23 -0.9 4,284,034 + MPMX20_04086 0.32 +0.6 4,284,052 - MPMX20_04086 0.34 +1.3 4,284,078 + MPMX20_04086 0.35 +2.1 4,284,147 + MPMX20_04086 0.40 -1.8 4,284,188 - MPMX20_04086 0.43 +0.3 4,284,321 + MPMX20_04086 0.52 -3.4 4,284,321 + MPMX20_04086 0.52 -0.0
Or see this region's nucleotide sequence