Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03986

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03984 and MPMX20_03985 are separated by 12 nucleotidesMPMX20_03985 and MPMX20_03986 are separated by 38 nucleotidesMPMX20_03986 and MPMX20_03987 overlap by 4 nucleotidesMPMX20_03987 and MPMX20_03988 are separated by 11 nucleotides MPMX20_03984: MPMX20_03984 - hypothetical protein, at 4,179,660 to 4,180,346 _03984 MPMX20_03985: MPMX20_03985 - 4-hydroxy-tetrahydrodipicolinate synthase, at 4,180,359 to 4,181,207 _03985 MPMX20_03986: MPMX20_03986 - (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase, at 4,181,246 to 4,181,539 _03986 MPMX20_03987: MPMX20_03987 - 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase, at 4,181,536 to 4,182,423 _03987 MPMX20_03988: MPMX20_03988 - Autoinducer 2-binding protein LsrB, at 4,182,435 to 4,183,436 _03988 Position (kb) 4181 4182Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4180.257 kb on + strand, within MPMX20_03984at 4180.281 kb on - strandat 4180.408 kb on + strandat 4180.505 kb on + strand, within MPMX20_03985at 4180.518 kb on - strand, within MPMX20_03985at 4180.518 kb on - strand, within MPMX20_03985at 4180.579 kb on + strand, within MPMX20_03985at 4180.641 kb on - strand, within MPMX20_03985at 4180.661 kb on - strand, within MPMX20_03985at 4180.680 kb on - strand, within MPMX20_03985at 4180.695 kb on + strand, within MPMX20_03985at 4180.695 kb on + strand, within MPMX20_03985at 4180.704 kb on - strand, within MPMX20_03985at 4180.712 kb on + strand, within MPMX20_03985at 4180.714 kb on - strand, within MPMX20_03985at 4180.850 kb on + strand, within MPMX20_03985at 4180.888 kb on + strand, within MPMX20_03985at 4180.974 kb on - strand, within MPMX20_03985at 4181.042 kb on + strand, within MPMX20_03985at 4181.127 kb on - strandat 4181.152 kb on + strandat 4181.160 kb on - strandat 4181.204 kb on - strandat 4181.223 kb on + strandat 4181.241 kb on + strandat 4181.292 kb on + strand, within MPMX20_03986at 4181.309 kb on - strand, within MPMX20_03986at 4181.321 kb on + strand, within MPMX20_03986at 4181.477 kb on + strand, within MPMX20_03986at 4181.477 kb on - strand, within MPMX20_03986at 4181.505 kb on + strand, within MPMX20_03986at 4181.513 kb on - strandat 4181.564 kb on + strandat 4181.642 kb on + strand, within MPMX20_03987at 4181.686 kb on + strand, within MPMX20_03987at 4181.737 kb on + strand, within MPMX20_03987at 4181.748 kb on + strand, within MPMX20_03987at 4181.843 kb on + strand, within MPMX20_03987at 4182.001 kb on - strand, within MPMX20_03987at 4182.001 kb on - strand, within MPMX20_03987at 4182.001 kb on - strand, within MPMX20_03987at 4182.135 kb on + strand, within MPMX20_03987at 4182.136 kb on - strand, within MPMX20_03987at 4182.190 kb on - strand, within MPMX20_03987at 4182.216 kb on + strand, within MPMX20_03987at 4182.224 kb on - strand, within MPMX20_03987at 4182.224 kb on - strand, within MPMX20_03987at 4182.224 kb on - strand, within MPMX20_03987at 4182.224 kb on - strand, within MPMX20_03987at 4182.224 kb on - strand, within MPMX20_03987at 4182.305 kb on + strand, within MPMX20_03987at 4182.313 kb on - strand, within MPMX20_03987at 4182.328 kb on - strand, within MPMX20_03987at 4182.343 kb on + strandat 4182.350 kb on - strandat 4182.350 kb on - strandat 4182.371 kb on + strandat 4182.473 kb on - strandat 4182.491 kb on + strandat 4182.507 kb on - strandat 4182.519 kb on - strandat 4182.533 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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4,180,257 + MPMX20_03984 0.87 -0.9
4,180,281 - -1.2
4,180,408 + +0.7
4,180,505 + MPMX20_03985 0.17 -1.8
4,180,518 - MPMX20_03985 0.19 +0.8
4,180,518 - MPMX20_03985 0.19 +0.9
4,180,579 + MPMX20_03985 0.26 +2.2
4,180,641 - MPMX20_03985 0.33 +0.8
4,180,661 - MPMX20_03985 0.36 +1.8
4,180,680 - MPMX20_03985 0.38 -2.4
4,180,695 + MPMX20_03985 0.40 +0.2
4,180,695 + MPMX20_03985 0.40 -0.7
4,180,704 - MPMX20_03985 0.41 +1.7
4,180,712 + MPMX20_03985 0.42 +0.0
4,180,714 - MPMX20_03985 0.42 +0.8
4,180,850 + MPMX20_03985 0.58 +1.7
4,180,888 + MPMX20_03985 0.62 -0.8
4,180,974 - MPMX20_03985 0.72 -0.7
4,181,042 + MPMX20_03985 0.80 +1.1
4,181,127 - +0.1
4,181,152 + -0.5
4,181,160 - +2.5
4,181,204 - +0.9
4,181,223 + -0.3
4,181,241 + +1.8
4,181,292 + MPMX20_03986 0.16 -2.7
4,181,309 - MPMX20_03986 0.21 -1.2
4,181,321 + MPMX20_03986 0.26 -1.9
4,181,477 + MPMX20_03986 0.79 -1.6
4,181,477 - MPMX20_03986 0.79 -3.6
4,181,505 + MPMX20_03986 0.88 -2.6
4,181,513 - -1.8
4,181,564 + -2.3
4,181,642 + MPMX20_03987 0.12 +0.9
4,181,686 + MPMX20_03987 0.17 -2.7
4,181,737 + MPMX20_03987 0.23 -0.9
4,181,748 + MPMX20_03987 0.24 -0.6
4,181,843 + MPMX20_03987 0.35 -2.2
4,182,001 - MPMX20_03987 0.52 +0.6
4,182,001 - MPMX20_03987 0.52 -0.9
4,182,001 - MPMX20_03987 0.52 +3.4
4,182,135 + MPMX20_03987 0.67 -1.7
4,182,136 - MPMX20_03987 0.68 +2.5
4,182,190 - MPMX20_03987 0.74 +2.3
4,182,216 + MPMX20_03987 0.77 +0.9
4,182,224 - MPMX20_03987 0.77 -0.5
4,182,224 - MPMX20_03987 0.77 -1.1
4,182,224 - MPMX20_03987 0.77 -1.7
4,182,224 - MPMX20_03987 0.77 +0.5
4,182,224 - MPMX20_03987 0.77 -0.1
4,182,305 + MPMX20_03987 0.87 -0.3
4,182,313 - MPMX20_03987 0.88 -0.5
4,182,328 - MPMX20_03987 0.89 -0.1
4,182,343 + -1.7
4,182,350 - -2.3
4,182,350 - -0.8
4,182,371 + -3.3
4,182,473 - -2.9
4,182,491 + -0.5
4,182,507 - -0.9
4,182,519 - -2.5
4,182,533 - -0.8

Or see this region's nucleotide sequence