Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03982 and MPMX20_03983 are separated by 33 nucleotides MPMX20_03983 and MPMX20_03984 are separated by 42 nucleotides MPMX20_03984 and MPMX20_03985 are separated by 12 nucleotides
MPMX20_03982: MPMX20_03982 - Putrescine aminotransferase, at 4,177,602 to 4,178,981
_03982
MPMX20_03983: MPMX20_03983 - hypothetical protein, at 4,179,015 to 4,179,617
_03983
MPMX20_03984: MPMX20_03984 - hypothetical protein, at 4,179,660 to 4,180,346
_03984
MPMX20_03985: MPMX20_03985 - 4-hydroxy-tetrahydrodipicolinate synthase, at 4,180,359 to 4,181,207
_03985
Position (kb)
4179
4180 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 4178.024 kb on + strand, within MPMX20_03982 at 4178.030 kb on - strand, within MPMX20_03982 at 4178.055 kb on + strand, within MPMX20_03982 at 4178.068 kb on - strand, within MPMX20_03982 at 4178.243 kb on + strand, within MPMX20_03982 at 4178.243 kb on + strand, within MPMX20_03982 at 4178.243 kb on + strand, within MPMX20_03982 at 4178.251 kb on - strand, within MPMX20_03982 at 4178.251 kb on - strand, within MPMX20_03982 at 4178.253 kb on + strand, within MPMX20_03982 at 4178.264 kb on + strand, within MPMX20_03982 at 4178.265 kb on - strand, within MPMX20_03982 at 4178.276 kb on + strand, within MPMX20_03982 at 4178.317 kb on - strand, within MPMX20_03982 at 4178.332 kb on - strand, within MPMX20_03982 at 4178.343 kb on - strand, within MPMX20_03982 at 4178.343 kb on - strand, within MPMX20_03982 at 4178.349 kb on + strand, within MPMX20_03982 at 4178.398 kb on - strand, within MPMX20_03982 at 4178.400 kb on + strand, within MPMX20_03982 at 4178.403 kb on - strand, within MPMX20_03982 at 4178.408 kb on - strand, within MPMX20_03982 at 4178.450 kb on - strand, within MPMX20_03982 at 4178.565 kb on - strand, within MPMX20_03982 at 4178.590 kb on + strand, within MPMX20_03982 at 4178.590 kb on + strand, within MPMX20_03982 at 4178.598 kb on - strand, within MPMX20_03982 at 4178.618 kb on - strand, within MPMX20_03982 at 4178.618 kb on - strand, within MPMX20_03982 at 4178.655 kb on + strand, within MPMX20_03982 at 4178.663 kb on + strand, within MPMX20_03982 at 4178.664 kb on - strand, within MPMX20_03982 at 4178.683 kb on - strand, within MPMX20_03982 at 4178.690 kb on - strand, within MPMX20_03982 at 4178.715 kb on - strand, within MPMX20_03982 at 4178.756 kb on + strand, within MPMX20_03982 at 4178.756 kb on + strand, within MPMX20_03982 at 4178.756 kb on + strand, within MPMX20_03982 at 4178.758 kb on + strand, within MPMX20_03982 at 4178.758 kb on + strand, within MPMX20_03982 at 4178.764 kb on - strand, within MPMX20_03982 at 4178.764 kb on - strand, within MPMX20_03982 at 4178.764 kb on - strand, within MPMX20_03982 at 4178.784 kb on - strand, within MPMX20_03982 at 4178.802 kb on + strand, within MPMX20_03982 at 4178.853 kb on + strand at 4178.963 kb on - strand at 4178.965 kb on + strand at 4178.996 kb on + strand at 4179.078 kb on + strand, within MPMX20_03983 at 4179.086 kb on - strand, within MPMX20_03983 at 4179.160 kb on - strand, within MPMX20_03983 at 4179.163 kb on + strand, within MPMX20_03983 at 4179.190 kb on - strand, within MPMX20_03983 at 4179.233 kb on + strand, within MPMX20_03983 at 4179.346 kb on + strand, within MPMX20_03983 at 4179.371 kb on + strand, within MPMX20_03983 at 4179.465 kb on + strand, within MPMX20_03983 at 4179.640 kb on - strand at 4179.640 kb on - strand at 4179.687 kb on - strand at 4179.734 kb on + strand, within MPMX20_03984 at 4179.852 kb on + strand, within MPMX20_03984 at 4179.855 kb on - strand, within MPMX20_03984 at 4179.879 kb on - strand, within MPMX20_03984 at 4179.885 kb on + strand, within MPMX20_03984 at 4179.895 kb on + strand, within MPMX20_03984 at 4179.906 kb on + strand, within MPMX20_03984 at 4179.911 kb on + strand, within MPMX20_03984 at 4179.919 kb on - strand, within MPMX20_03984 at 4179.941 kb on + strand, within MPMX20_03984 at 4179.941 kb on + strand, within MPMX20_03984 at 4179.941 kb on + strand, within MPMX20_03984 at 4179.941 kb on + strand, within MPMX20_03984 at 4179.941 kb on + strand, within MPMX20_03984 at 4179.941 kb on + strand, within MPMX20_03984 at 4180.042 kb on + strand, within MPMX20_03984 at 4180.068 kb on - strand, within MPMX20_03984 at 4180.076 kb on - strand, within MPMX20_03984 at 4180.078 kb on + strand, within MPMX20_03984 at 4180.078 kb on + strand, within MPMX20_03984 at 4180.146 kb on + strand, within MPMX20_03984 at 4180.172 kb on + strand, within MPMX20_03984 at 4180.209 kb on + strand, within MPMX20_03984 at 4180.257 kb on + strand, within MPMX20_03984 at 4180.281 kb on - strand at 4180.408 kb on + strand at 4180.505 kb on + strand, within MPMX20_03985 at 4180.518 kb on - strand, within MPMX20_03985 at 4180.518 kb on - strand, within MPMX20_03985 at 4180.579 kb on + strand, within MPMX20_03985
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 4,178,024 + MPMX20_03982 0.31 +0.2 4,178,030 - MPMX20_03982 0.31 -0.0 4,178,055 + MPMX20_03982 0.33 -1.9 4,178,068 - MPMX20_03982 0.34 +0.4 4,178,243 + MPMX20_03982 0.46 +5.1 4,178,243 + MPMX20_03982 0.46 +0.3 4,178,243 + MPMX20_03982 0.46 +0.6 4,178,251 - MPMX20_03982 0.47 +1.3 4,178,251 - MPMX20_03982 0.47 +0.1 4,178,253 + MPMX20_03982 0.47 -0.9 4,178,264 + MPMX20_03982 0.48 +0.5 4,178,265 - MPMX20_03982 0.48 +1.9 4,178,276 + MPMX20_03982 0.49 +2.5 4,178,317 - MPMX20_03982 0.52 -1.3 4,178,332 - MPMX20_03982 0.53 -0.7 4,178,343 - MPMX20_03982 0.54 -2.6 4,178,343 - MPMX20_03982 0.54 -1.0 4,178,349 + MPMX20_03982 0.54 +0.5 4,178,398 - MPMX20_03982 0.58 -0.8 4,178,400 + MPMX20_03982 0.58 +0.0 4,178,403 - MPMX20_03982 0.58 +0.4 4,178,408 - MPMX20_03982 0.58 -0.1 4,178,450 - MPMX20_03982 0.61 +2.9 4,178,565 - MPMX20_03982 0.70 -4.0 4,178,590 + MPMX20_03982 0.72 -0.1 4,178,590 + MPMX20_03982 0.72 -2.7 4,178,598 - MPMX20_03982 0.72 -0.5 4,178,618 - MPMX20_03982 0.74 +1.5 4,178,618 - MPMX20_03982 0.74 -1.0 4,178,655 + MPMX20_03982 0.76 -0.6 4,178,663 + MPMX20_03982 0.77 +2.1 4,178,664 - MPMX20_03982 0.77 -1.2 4,178,683 - MPMX20_03982 0.78 -2.3 4,178,690 - MPMX20_03982 0.79 -2.4 4,178,715 - MPMX20_03982 0.81 -1.5 4,178,756 + MPMX20_03982 0.84 +0.5 4,178,756 + MPMX20_03982 0.84 -1.7 4,178,756 + MPMX20_03982 0.84 -0.3 4,178,758 + MPMX20_03982 0.84 +0.8 4,178,758 + MPMX20_03982 0.84 +1.2 4,178,764 - MPMX20_03982 0.84 +0.2 4,178,764 - MPMX20_03982 0.84 +0.4 4,178,764 - MPMX20_03982 0.84 +0.6 4,178,784 - MPMX20_03982 0.86 +1.8 4,178,802 + MPMX20_03982 0.87 -1.3 4,178,853 + +0.7 4,178,963 - -0.4 4,178,965 + +0.3 4,178,996 + -2.5 4,179,078 + MPMX20_03983 0.10 -1.3 4,179,086 - MPMX20_03983 0.12 -3.1 4,179,160 - MPMX20_03983 0.24 +0.9 4,179,163 + MPMX20_03983 0.25 +0.5 4,179,190 - MPMX20_03983 0.29 -1.4 4,179,233 + MPMX20_03983 0.36 -1.8 4,179,346 + MPMX20_03983 0.55 -1.6 4,179,371 + MPMX20_03983 0.59 +0.2 4,179,465 + MPMX20_03983 0.75 +1.5 4,179,640 - +1.5 4,179,640 - +0.9 4,179,687 - -0.3 4,179,734 + MPMX20_03984 0.11 -1.3 4,179,852 + MPMX20_03984 0.28 -1.6 4,179,855 - MPMX20_03984 0.28 -0.0 4,179,879 - MPMX20_03984 0.32 -3.2 4,179,885 + MPMX20_03984 0.33 +3.2 4,179,895 + MPMX20_03984 0.34 -2.1 4,179,906 + MPMX20_03984 0.36 -1.3 4,179,911 + MPMX20_03984 0.37 -0.6 4,179,919 - MPMX20_03984 0.38 -0.7 4,179,941 + MPMX20_03984 0.41 -2.4 4,179,941 + MPMX20_03984 0.41 -0.8 4,179,941 + MPMX20_03984 0.41 +1.5 4,179,941 + MPMX20_03984 0.41 +1.1 4,179,941 + MPMX20_03984 0.41 -1.3 4,179,941 + MPMX20_03984 0.41 -2.9 4,180,042 + MPMX20_03984 0.56 -0.3 4,180,068 - MPMX20_03984 0.59 +1.1 4,180,076 - MPMX20_03984 0.61 +0.1 4,180,078 + MPMX20_03984 0.61 +0.3 4,180,078 + MPMX20_03984 0.61 -1.0 4,180,146 + MPMX20_03984 0.71 -0.7 4,180,172 + MPMX20_03984 0.75 -0.7 4,180,209 + MPMX20_03984 0.80 -0.3 4,180,257 + MPMX20_03984 0.87 -0.9 4,180,281 - -1.2 4,180,408 + +0.7 4,180,505 + MPMX20_03985 0.17 -1.8 4,180,518 - MPMX20_03985 0.19 +0.8 4,180,518 - MPMX20_03985 0.19 +0.9 4,180,579 + MPMX20_03985 0.26 +2.2
Or see this region's nucleotide sequence