Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03881

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03879 and MPMX20_03880 are separated by 27 nucleotidesMPMX20_03880 and MPMX20_03881 overlap by 4 nucleotidesMPMX20_03881 and MPMX20_03882 are separated by 204 nucleotides MPMX20_03879: MPMX20_03879 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 4,088,713 to 4,089,540 _03879 MPMX20_03880: MPMX20_03880 - hypothetical protein, at 4,089,568 to 4,089,990 _03880 MPMX20_03881: MPMX20_03881 - ADP-ribose pyrophosphatase, at 4,089,987 to 4,090,619 _03881 MPMX20_03882: MPMX20_03882 - Outer membrane protein TolC, at 4,090,824 to 4,092,302 _03882 Position (kb) 4089 4090 4091Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4088.988 kb on - strand, within MPMX20_03879at 4089.001 kb on - strand, within MPMX20_03879at 4089.015 kb on - strand, within MPMX20_03879at 4089.143 kb on + strand, within MPMX20_03879at 4089.157 kb on + strand, within MPMX20_03879at 4089.211 kb on + strand, within MPMX20_03879at 4089.235 kb on + strand, within MPMX20_03879at 4089.235 kb on + strand, within MPMX20_03879at 4089.235 kb on + strand, within MPMX20_03879at 4089.235 kb on + strand, within MPMX20_03879at 4089.235 kb on + strand, within MPMX20_03879at 4089.243 kb on - strand, within MPMX20_03879at 4089.243 kb on - strand, within MPMX20_03879at 4089.243 kb on - strand, within MPMX20_03879at 4089.332 kb on + strand, within MPMX20_03879at 4089.345 kb on - strand, within MPMX20_03879at 4089.350 kb on - strand, within MPMX20_03879at 4089.413 kb on - strand, within MPMX20_03879at 4089.506 kb on - strandat 4089.617 kb on - strand, within MPMX20_03880at 4089.633 kb on + strand, within MPMX20_03880at 4089.722 kb on - strand, within MPMX20_03880at 4089.722 kb on - strand, within MPMX20_03880at 4089.724 kb on - strand, within MPMX20_03880at 4089.746 kb on + strand, within MPMX20_03880at 4089.754 kb on - strand, within MPMX20_03880at 4089.783 kb on + strand, within MPMX20_03880at 4089.790 kb on + strand, within MPMX20_03880at 4089.819 kb on + strand, within MPMX20_03880at 4089.819 kb on + strand, within MPMX20_03880at 4089.827 kb on - strand, within MPMX20_03880at 4089.827 kb on - strand, within MPMX20_03880at 4089.827 kb on - strand, within MPMX20_03880at 4089.827 kb on - strand, within MPMX20_03880at 4089.873 kb on + strand, within MPMX20_03880at 4089.873 kb on + strand, within MPMX20_03880at 4089.881 kb on - strand, within MPMX20_03880at 4089.977 kb on + strandat 4089.982 kb on - strandat 4089.982 kb on - strandat 4090.025 kb on + strandat 4090.095 kb on - strand, within MPMX20_03881at 4090.097 kb on + strand, within MPMX20_03881at 4090.105 kb on - strand, within MPMX20_03881at 4090.105 kb on - strand, within MPMX20_03881at 4090.105 kb on - strand, within MPMX20_03881at 4090.197 kb on - strand, within MPMX20_03881at 4090.259 kb on + strand, within MPMX20_03881at 4090.319 kb on + strand, within MPMX20_03881at 4090.381 kb on + strand, within MPMX20_03881at 4090.429 kb on - strand, within MPMX20_03881at 4090.429 kb on - strand, within MPMX20_03881at 4090.430 kb on + strand, within MPMX20_03881at 4090.502 kb on + strand, within MPMX20_03881at 4090.622 kb on + strandat 4090.622 kb on + strandat 4090.630 kb on - strandat 4090.680 kb on + strandat 4090.680 kb on + strandat 4090.688 kb on + strandat 4090.689 kb on - strandat 4090.738 kb on + strandat 4090.792 kb on + strandat 4090.792 kb on + strandat 4090.792 kb on + strandat 4090.804 kb on + strandat 4090.838 kb on + strandat 4090.852 kb on + strandat 4090.852 kb on + strandat 4090.852 kb on + strandat 4090.859 kb on - strandat 4090.860 kb on - strandat 4090.860 kb on - strandat 4090.860 kb on - strandat 4090.920 kb on + strandat 4090.920 kb on + strandat 4090.920 kb on + strandat 4090.920 kb on + strandat 4090.925 kb on + strandat 4090.928 kb on - strandat 4090.928 kb on - strandat 4090.928 kb on - strandat 4090.933 kb on - strandat 4090.979 kb on + strand, within MPMX20_03882at 4090.979 kb on + strand, within MPMX20_03882at 4090.987 kb on - strand, within MPMX20_03882at 4091.004 kb on - strand, within MPMX20_03882at 4091.012 kb on - strand, within MPMX20_03882at 4091.018 kb on - strand, within MPMX20_03882at 4091.020 kb on - strand, within MPMX20_03882at 4091.023 kb on + strand, within MPMX20_03882at 4091.028 kb on + strand, within MPMX20_03882at 4091.036 kb on - strand, within MPMX20_03882at 4091.047 kb on - strand, within MPMX20_03882at 4091.057 kb on + strand, within MPMX20_03882at 4091.136 kb on + strand, within MPMX20_03882at 4091.144 kb on - strand, within MPMX20_03882at 4091.145 kb on - strand, within MPMX20_03882at 4091.145 kb on - strand, within MPMX20_03882at 4091.145 kb on - strand, within MPMX20_03882at 4091.145 kb on - strand, within MPMX20_03882at 4091.163 kb on + strand, within MPMX20_03882at 4091.258 kb on + strand, within MPMX20_03882at 4091.258 kb on + strand, within MPMX20_03882at 4091.258 kb on + strand, within MPMX20_03882at 4091.266 kb on - strand, within MPMX20_03882at 4091.266 kb on - strand, within MPMX20_03882at 4091.349 kb on - strand, within MPMX20_03882at 4091.367 kb on + strand, within MPMX20_03882at 4091.375 kb on - strand, within MPMX20_03882at 4091.453 kb on + strand, within MPMX20_03882at 4091.458 kb on + strand, within MPMX20_03882at 4091.461 kb on - strand, within MPMX20_03882at 4091.518 kb on + strand, within MPMX20_03882

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
remove
4,088,988 - MPMX20_03879 0.33 -1.0
4,089,001 - MPMX20_03879 0.35 -0.9
4,089,015 - MPMX20_03879 0.36 -0.8
4,089,143 + MPMX20_03879 0.52 +1.2
4,089,157 + MPMX20_03879 0.54 +1.7
4,089,211 + MPMX20_03879 0.60 +0.5
4,089,235 + MPMX20_03879 0.63 +1.1
4,089,235 + MPMX20_03879 0.63 -0.2
4,089,235 + MPMX20_03879 0.63 -0.5
4,089,235 + MPMX20_03879 0.63 +0.5
4,089,235 + MPMX20_03879 0.63 -0.2
4,089,243 - MPMX20_03879 0.64 -1.1
4,089,243 - MPMX20_03879 0.64 -1.9
4,089,243 - MPMX20_03879 0.64 +0.7
4,089,332 + MPMX20_03879 0.75 -0.9
4,089,345 - MPMX20_03879 0.76 -1.4
4,089,350 - MPMX20_03879 0.77 -0.8
4,089,413 - MPMX20_03879 0.85 +1.2
4,089,506 - +1.8
4,089,617 - MPMX20_03880 0.12 +0.2
4,089,633 + MPMX20_03880 0.15 -0.8
4,089,722 - MPMX20_03880 0.36 +0.1
4,089,722 - MPMX20_03880 0.36 +0.5
4,089,724 - MPMX20_03880 0.37 +0.5
4,089,746 + MPMX20_03880 0.42 -0.8
4,089,754 - MPMX20_03880 0.44 +0.5
4,089,783 + MPMX20_03880 0.51 +1.5
4,089,790 + MPMX20_03880 0.52 +0.5
4,089,819 + MPMX20_03880 0.59 +1.5
4,089,819 + MPMX20_03880 0.59 -1.6
4,089,827 - MPMX20_03880 0.61 -0.6
4,089,827 - MPMX20_03880 0.61 -1.9
4,089,827 - MPMX20_03880 0.61 +0.4
4,089,827 - MPMX20_03880 0.61 -0.8
4,089,873 + MPMX20_03880 0.72 -1.7
4,089,873 + MPMX20_03880 0.72 -0.4
4,089,881 - MPMX20_03880 0.74 +1.0
4,089,977 + -1.9
4,089,982 - -0.4
4,089,982 - -0.2
4,090,025 + -0.3
4,090,095 - MPMX20_03881 0.17 +1.5
4,090,097 + MPMX20_03881 0.17 -0.7
4,090,105 - MPMX20_03881 0.19 -1.4
4,090,105 - MPMX20_03881 0.19 -3.1
4,090,105 - MPMX20_03881 0.19 -1.5
4,090,197 - MPMX20_03881 0.33 +0.5
4,090,259 + MPMX20_03881 0.43 +0.8
4,090,319 + MPMX20_03881 0.52 -0.2
4,090,381 + MPMX20_03881 0.62 -0.8
4,090,429 - MPMX20_03881 0.70 -0.6
4,090,429 - MPMX20_03881 0.70 -0.5
4,090,430 + MPMX20_03881 0.70 -1.6
4,090,502 + MPMX20_03881 0.81 -2.7
4,090,622 + +0.9
4,090,622 + -2.4
4,090,630 - -0.9
4,090,680 + -1.3
4,090,680 + +0.4
4,090,688 + +0.1
4,090,689 - -1.3
4,090,738 + -1.5
4,090,792 + +0.2
4,090,792 + -1.2
4,090,792 + +1.5
4,090,804 + +0.9
4,090,838 + -1.5
4,090,852 + -1.2
4,090,852 + +0.2
4,090,852 + -0.6
4,090,859 - -0.3
4,090,860 - +2.5
4,090,860 - +0.5
4,090,860 - -0.5
4,090,920 + -0.6
4,090,920 + +2.5
4,090,920 + +1.8
4,090,920 + +0.2
4,090,925 + -1.1
4,090,928 - +0.2
4,090,928 - +0.2
4,090,928 - -0.1
4,090,933 - +0.5
4,090,979 + MPMX20_03882 0.10 +1.5
4,090,979 + MPMX20_03882 0.10 -1.3
4,090,987 - MPMX20_03882 0.11 -1.4
4,091,004 - MPMX20_03882 0.12 -0.5
4,091,012 - MPMX20_03882 0.13 -0.5
4,091,018 - MPMX20_03882 0.13 -1.2
4,091,020 - MPMX20_03882 0.13 +2.5
4,091,023 + MPMX20_03882 0.13 -2.6
4,091,028 + MPMX20_03882 0.14 -0.5
4,091,036 - MPMX20_03882 0.14 -1.3
4,091,047 - MPMX20_03882 0.15 -1.4
4,091,057 + MPMX20_03882 0.16 +1.5
4,091,136 + MPMX20_03882 0.21 +1.5
4,091,144 - MPMX20_03882 0.22 +1.5
4,091,145 - MPMX20_03882 0.22 +0.4
4,091,145 - MPMX20_03882 0.22 -0.1
4,091,145 - MPMX20_03882 0.22 -1.2
4,091,145 - MPMX20_03882 0.22 +1.5
4,091,163 + MPMX20_03882 0.23 -2.0
4,091,258 + MPMX20_03882 0.29 +2.5
4,091,258 + MPMX20_03882 0.29 -1.6
4,091,258 + MPMX20_03882 0.29 -2.1
4,091,266 - MPMX20_03882 0.30 -0.9
4,091,266 - MPMX20_03882 0.30 +0.9
4,091,349 - MPMX20_03882 0.35 -0.1
4,091,367 + MPMX20_03882 0.37 -1.9
4,091,375 - MPMX20_03882 0.37 +0.2
4,091,453 + MPMX20_03882 0.43 +0.9
4,091,458 + MPMX20_03882 0.43 +0.5
4,091,461 - MPMX20_03882 0.43 -0.5
4,091,518 + MPMX20_03882 0.47 +0.5

Or see this region's nucleotide sequence