Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03861

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03859 and MPMX20_03860 are separated by 59 nucleotidesMPMX20_03860 and MPMX20_03861 are separated by 164 nucleotidesMPMX20_03861 and MPMX20_03862 are separated by 118 nucleotidesMPMX20_03862 and MPMX20_03863 are separated by 138 nucleotides MPMX20_03859: MPMX20_03859 - Cell division protein FtsP, at 4,065,202 to 4,066,614 _03859 MPMX20_03860: MPMX20_03860 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 4,066,674 to 4,067,411 _03860 MPMX20_03861: MPMX20_03861 - DNA topoisomerase 4 subunit A, at 4,067,576 to 4,069,834 _03861 MPMX20_03862: MPMX20_03862 - Protein YgiW, at 4,069,953 to 4,070,354 _03862 MPMX20_03863: MPMX20_03863 - Transcriptional regulatory protein QseB, at 4,070,493 to 4,071,152 _03863 Position (kb) 4067 4068 4069 4070Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4066.590 kb on - strandat 4066.612 kb on + strandat 4066.612 kb on + strandat 4066.672 kb on + strandat 4066.672 kb on + strandat 4067.439 kb on + strandat 4067.447 kb on - strandat 4067.447 kb on - strandat 4067.447 kb on - strandat 4067.470 kb on - strandat 4067.470 kb on - strandat 4067.470 kb on - strandat 4067.548 kb on + strandat 4067.553 kb on + strandat 4067.560 kb on + strandat 4067.573 kb on + strandat 4067.573 kb on + strandat 4067.573 kb on + strandat 4067.573 kb on + strandat 4067.573 kb on + strandat 4067.573 kb on + strandat 4067.573 kb on + strandat 4067.573 kb on + strandat 4067.581 kb on - strandat 4067.581 kb on - strandat 4067.581 kb on - strandat 4067.581 kb on - strandat 4067.586 kb on - strandat 4067.646 kb on - strandat 4069.888 kb on + strandat 4069.896 kb on - strandat 4069.902 kb on - strandat 4069.976 kb on + strandat 4069.984 kb on - strandat 4070.037 kb on + strand, within MPMX20_03862at 4070.045 kb on + strand, within MPMX20_03862at 4070.053 kb on - strand, within MPMX20_03862at 4070.053 kb on - strand, within MPMX20_03862at 4070.053 kb on - strand, within MPMX20_03862at 4070.061 kb on + strand, within MPMX20_03862at 4070.116 kb on + strand, within MPMX20_03862at 4070.116 kb on + strand, within MPMX20_03862at 4070.124 kb on - strand, within MPMX20_03862at 4070.141 kb on + strand, within MPMX20_03862at 4070.143 kb on - strand, within MPMX20_03862at 4070.144 kb on - strand, within MPMX20_03862at 4070.159 kb on + strand, within MPMX20_03862at 4070.159 kb on + strand, within MPMX20_03862at 4070.159 kb on + strand, within MPMX20_03862at 4070.162 kb on + strand, within MPMX20_03862at 4070.167 kb on - strand, within MPMX20_03862at 4070.167 kb on - strand, within MPMX20_03862at 4070.205 kb on + strand, within MPMX20_03862at 4070.211 kb on - strand, within MPMX20_03862at 4070.213 kb on - strand, within MPMX20_03862at 4070.261 kb on + strand, within MPMX20_03862at 4070.374 kb on - strandat 4070.386 kb on + strandat 4070.386 kb on + strandat 4070.386 kb on + strandat 4070.386 kb on + strandat 4070.394 kb on - strandat 4070.394 kb on - strandat 4070.394 kb on - strandat 4070.396 kb on + strandat 4070.396 kb on + strandat 4070.396 kb on + strandat 4070.396 kb on + strandat 4070.396 kb on + strandat 4070.396 kb on + strandat 4070.396 kb on + strandat 4070.404 kb on - strandat 4070.404 kb on - strandat 4070.404 kb on - strandat 4070.442 kb on + strandat 4070.442 kb on + strandat 4070.457 kb on + strandat 4070.460 kb on - strandat 4070.472 kb on - strandat 4070.474 kb on - strandat 4070.515 kb on - strandat 4070.516 kb on - strandat 4070.530 kb on - strandat 4070.542 kb on + strandat 4070.545 kb on - strandat 4070.637 kb on + strand, within MPMX20_03863at 4070.645 kb on - strand, within MPMX20_03863at 4070.654 kb on + strand, within MPMX20_03863at 4070.787 kb on - strand, within MPMX20_03863at 4070.789 kb on + strand, within MPMX20_03863at 4070.797 kb on - strand, within MPMX20_03863at 4070.805 kb on - strand, within MPMX20_03863at 4070.805 kb on - strand, within MPMX20_03863

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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4,066,590 - -1.0
4,066,612 + +0.3
4,066,612 + +1.5
4,066,672 + -2.2
4,066,672 + +1.0
4,067,439 + +0.2
4,067,447 - -0.7
4,067,447 - +0.4
4,067,447 - +0.2
4,067,470 - -0.6
4,067,470 - +0.5
4,067,470 - -2.0
4,067,548 + -0.4
4,067,553 + +2.1
4,067,560 + -0.0
4,067,573 + +0.5
4,067,573 + -0.6
4,067,573 + -0.8
4,067,573 + +1.5
4,067,573 + +0.2
4,067,573 + -1.0
4,067,573 + +1.1
4,067,573 + -0.0
4,067,581 - +0.6
4,067,581 - -0.6
4,067,581 - +3.5
4,067,581 - -0.5
4,067,586 - +0.7
4,067,646 - +1.1
4,069,888 + -1.0
4,069,896 - -1.6
4,069,902 - +1.0
4,069,976 + +1.1
4,069,984 - +0.4
4,070,037 + MPMX20_03862 0.21 -0.2
4,070,045 + MPMX20_03862 0.23 -1.7
4,070,053 - MPMX20_03862 0.25 +1.1
4,070,053 - MPMX20_03862 0.25 +0.6
4,070,053 - MPMX20_03862 0.25 +5.7
4,070,061 + MPMX20_03862 0.27 -0.3
4,070,116 + MPMX20_03862 0.41 -2.0
4,070,116 + MPMX20_03862 0.41 -0.9
4,070,124 - MPMX20_03862 0.43 +0.2
4,070,141 + MPMX20_03862 0.47 +2.4
4,070,143 - MPMX20_03862 0.47 -0.6
4,070,144 - MPMX20_03862 0.48 -0.0
4,070,159 + MPMX20_03862 0.51 -0.9
4,070,159 + MPMX20_03862 0.51 -0.0
4,070,159 + MPMX20_03862 0.51 +1.4
4,070,162 + MPMX20_03862 0.52 -1.8
4,070,167 - MPMX20_03862 0.53 +0.9
4,070,167 - MPMX20_03862 0.53 +0.2
4,070,205 + MPMX20_03862 0.63 +1.3
4,070,211 - MPMX20_03862 0.64 +0.6
4,070,213 - MPMX20_03862 0.65 +0.6
4,070,261 + MPMX20_03862 0.77 -1.0
4,070,374 - -0.9
4,070,386 + -0.1
4,070,386 + +0.2
4,070,386 + -0.0
4,070,386 + -2.5
4,070,394 - +0.5
4,070,394 - -1.9
4,070,394 - -1.2
4,070,396 + +0.9
4,070,396 + +0.0
4,070,396 + +0.6
4,070,396 + -1.3
4,070,396 + +1.2
4,070,396 + -0.9
4,070,396 + +1.2
4,070,404 - -0.9
4,070,404 - -0.1
4,070,404 - +2.7
4,070,442 + +2.6
4,070,442 + -1.6
4,070,457 + +0.6
4,070,460 - +1.1
4,070,472 - +1.6
4,070,474 - -3.7
4,070,515 - -0.2
4,070,516 - -0.4
4,070,530 - +0.4
4,070,542 + +3.2
4,070,545 - -1.6
4,070,637 + MPMX20_03863 0.22 +0.6
4,070,645 - MPMX20_03863 0.23 -1.6
4,070,654 + MPMX20_03863 0.24 +0.2
4,070,787 - MPMX20_03863 0.45 +0.9
4,070,789 + MPMX20_03863 0.45 +0.5
4,070,797 - MPMX20_03863 0.46 +0.7
4,070,805 - MPMX20_03863 0.47 -1.3
4,070,805 - MPMX20_03863 0.47 +1.9

Or see this region's nucleotide sequence