Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03859 and MPMX20_03860 are separated by 59 nucleotides MPMX20_03860 and MPMX20_03861 are separated by 164 nucleotides MPMX20_03861 and MPMX20_03862 are separated by 118 nucleotides MPMX20_03862 and MPMX20_03863 are separated by 138 nucleotides
MPMX20_03859: MPMX20_03859 - Cell division protein FtsP, at 4,065,202 to 4,066,614
_03859
MPMX20_03860: MPMX20_03860 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 4,066,674 to 4,067,411
_03860
MPMX20_03861: MPMX20_03861 - DNA topoisomerase 4 subunit A, at 4,067,576 to 4,069,834
_03861
MPMX20_03862: MPMX20_03862 - Protein YgiW, at 4,069,953 to 4,070,354
_03862
MPMX20_03863: MPMX20_03863 - Transcriptional regulatory protein QseB, at 4,070,493 to 4,071,152
_03863
Position (kb)
4067
4068
4069
4070 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 4066.590 kb on - strand at 4066.612 kb on + strand at 4066.612 kb on + strand at 4066.672 kb on + strand at 4066.672 kb on + strand at 4067.439 kb on + strand at 4067.447 kb on - strand at 4067.447 kb on - strand at 4067.447 kb on - strand at 4067.470 kb on - strand at 4067.470 kb on - strand at 4067.470 kb on - strand at 4067.548 kb on + strand at 4067.553 kb on + strand at 4067.560 kb on + strand at 4067.573 kb on + strand at 4067.573 kb on + strand at 4067.573 kb on + strand at 4067.573 kb on + strand at 4067.573 kb on + strand at 4067.573 kb on + strand at 4067.573 kb on + strand at 4067.573 kb on + strand at 4067.581 kb on - strand at 4067.581 kb on - strand at 4067.581 kb on - strand at 4067.581 kb on - strand at 4067.586 kb on - strand at 4067.646 kb on - strand at 4069.888 kb on + strand at 4069.896 kb on - strand at 4069.902 kb on - strand at 4069.976 kb on + strand at 4069.984 kb on - strand at 4070.037 kb on + strand, within MPMX20_03862 at 4070.045 kb on + strand, within MPMX20_03862 at 4070.053 kb on - strand, within MPMX20_03862 at 4070.053 kb on - strand, within MPMX20_03862 at 4070.053 kb on - strand, within MPMX20_03862 at 4070.061 kb on + strand, within MPMX20_03862 at 4070.116 kb on + strand, within MPMX20_03862 at 4070.116 kb on + strand, within MPMX20_03862 at 4070.124 kb on - strand, within MPMX20_03862 at 4070.141 kb on + strand, within MPMX20_03862 at 4070.143 kb on - strand, within MPMX20_03862 at 4070.144 kb on - strand, within MPMX20_03862 at 4070.159 kb on + strand, within MPMX20_03862 at 4070.159 kb on + strand, within MPMX20_03862 at 4070.159 kb on + strand, within MPMX20_03862 at 4070.162 kb on + strand, within MPMX20_03862 at 4070.167 kb on - strand, within MPMX20_03862 at 4070.167 kb on - strand, within MPMX20_03862 at 4070.205 kb on + strand, within MPMX20_03862 at 4070.211 kb on - strand, within MPMX20_03862 at 4070.213 kb on - strand, within MPMX20_03862 at 4070.261 kb on + strand, within MPMX20_03862 at 4070.374 kb on - strand at 4070.386 kb on + strand at 4070.386 kb on + strand at 4070.386 kb on + strand at 4070.386 kb on + strand at 4070.394 kb on - strand at 4070.394 kb on - strand at 4070.394 kb on - strand at 4070.396 kb on + strand at 4070.396 kb on + strand at 4070.396 kb on + strand at 4070.396 kb on + strand at 4070.396 kb on + strand at 4070.396 kb on + strand at 4070.396 kb on + strand at 4070.404 kb on - strand at 4070.404 kb on - strand at 4070.404 kb on - strand at 4070.442 kb on + strand at 4070.442 kb on + strand at 4070.457 kb on + strand at 4070.460 kb on - strand at 4070.472 kb on - strand at 4070.474 kb on - strand at 4070.515 kb on - strand at 4070.516 kb on - strand at 4070.530 kb on - strand at 4070.542 kb on + strand at 4070.545 kb on - strand at 4070.637 kb on + strand, within MPMX20_03863 at 4070.645 kb on - strand, within MPMX20_03863 at 4070.654 kb on + strand, within MPMX20_03863 at 4070.787 kb on - strand, within MPMX20_03863 at 4070.789 kb on + strand, within MPMX20_03863 at 4070.797 kb on - strand, within MPMX20_03863 at 4070.805 kb on - strand, within MPMX20_03863 at 4070.805 kb on - strand, within MPMX20_03863
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 4,066,590 - -1.0 4,066,612 + +0.3 4,066,612 + +1.5 4,066,672 + -2.2 4,066,672 + +1.0 4,067,439 + +0.2 4,067,447 - -0.7 4,067,447 - +0.4 4,067,447 - +0.2 4,067,470 - -0.6 4,067,470 - +0.5 4,067,470 - -2.0 4,067,548 + -0.4 4,067,553 + +2.1 4,067,560 + -0.0 4,067,573 + +0.5 4,067,573 + -0.6 4,067,573 + -0.8 4,067,573 + +1.5 4,067,573 + +0.2 4,067,573 + -1.0 4,067,573 + +1.1 4,067,573 + -0.0 4,067,581 - +0.6 4,067,581 - -0.6 4,067,581 - +3.5 4,067,581 - -0.5 4,067,586 - +0.7 4,067,646 - +1.1 4,069,888 + -1.0 4,069,896 - -1.6 4,069,902 - +1.0 4,069,976 + +1.1 4,069,984 - +0.4 4,070,037 + MPMX20_03862 0.21 -0.2 4,070,045 + MPMX20_03862 0.23 -1.7 4,070,053 - MPMX20_03862 0.25 +1.1 4,070,053 - MPMX20_03862 0.25 +0.6 4,070,053 - MPMX20_03862 0.25 +5.7 4,070,061 + MPMX20_03862 0.27 -0.3 4,070,116 + MPMX20_03862 0.41 -2.0 4,070,116 + MPMX20_03862 0.41 -0.9 4,070,124 - MPMX20_03862 0.43 +0.2 4,070,141 + MPMX20_03862 0.47 +2.4 4,070,143 - MPMX20_03862 0.47 -0.6 4,070,144 - MPMX20_03862 0.48 -0.0 4,070,159 + MPMX20_03862 0.51 -0.9 4,070,159 + MPMX20_03862 0.51 -0.0 4,070,159 + MPMX20_03862 0.51 +1.4 4,070,162 + MPMX20_03862 0.52 -1.8 4,070,167 - MPMX20_03862 0.53 +0.9 4,070,167 - MPMX20_03862 0.53 +0.2 4,070,205 + MPMX20_03862 0.63 +1.3 4,070,211 - MPMX20_03862 0.64 +0.6 4,070,213 - MPMX20_03862 0.65 +0.6 4,070,261 + MPMX20_03862 0.77 -1.0 4,070,374 - -0.9 4,070,386 + -0.1 4,070,386 + +0.2 4,070,386 + -0.0 4,070,386 + -2.5 4,070,394 - +0.5 4,070,394 - -1.9 4,070,394 - -1.2 4,070,396 + +0.9 4,070,396 + +0.0 4,070,396 + +0.6 4,070,396 + -1.3 4,070,396 + +1.2 4,070,396 + -0.9 4,070,396 + +1.2 4,070,404 - -0.9 4,070,404 - -0.1 4,070,404 - +2.7 4,070,442 + +2.6 4,070,442 + -1.6 4,070,457 + +0.6 4,070,460 - +1.1 4,070,472 - +1.6 4,070,474 - -3.7 4,070,515 - -0.2 4,070,516 - -0.4 4,070,530 - +0.4 4,070,542 + +3.2 4,070,545 - -1.6 4,070,637 + MPMX20_03863 0.22 +0.6 4,070,645 - MPMX20_03863 0.23 -1.6 4,070,654 + MPMX20_03863 0.24 +0.2 4,070,787 - MPMX20_03863 0.45 +0.9 4,070,789 + MPMX20_03863 0.45 +0.5 4,070,797 - MPMX20_03863 0.46 +0.7 4,070,805 - MPMX20_03863 0.47 -1.3 4,070,805 - MPMX20_03863 0.47 +1.9
Or see this region's nucleotide sequence