Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03818

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03816 and MPMX20_03817 overlap by 1 nucleotidesMPMX20_03817 and MPMX20_03818 are separated by 144 nucleotidesMPMX20_03818 and MPMX20_03819 are separated by 26 nucleotidesMPMX20_03819 and MPMX20_03820 are separated by 53 nucleotides MPMX20_03816: MPMX20_03816 - hypothetical protein, at 4,019,075 to 4,019,401 _03816 MPMX20_03817: MPMX20_03817 - tRNA (guanine-N(7)-)-methyltransferase, at 4,019,401 to 4,020,120 _03817 MPMX20_03818: MPMX20_03818 - Adenine DNA glycosylase, at 4,020,265 to 4,021,317 _03818 MPMX20_03819: MPMX20_03819 - putative Fe(2+)-trafficking protein, at 4,021,344 to 4,021,616 _03819 MPMX20_03820: MPMX20_03820 - Membrane-bound lytic murein transglycosylase C, at 4,021,670 to 4,022,749 _03820 Position (kb) 4020 4021 4022Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4019.274 kb on + strand, within MPMX20_03816at 4019.293 kb on + strand, within MPMX20_03816at 4019.293 kb on + strand, within MPMX20_03816at 4019.293 kb on + strand, within MPMX20_03816at 4019.293 kb on + strand, within MPMX20_03816at 4019.293 kb on + strand, within MPMX20_03816at 4019.293 kb on + strand, within MPMX20_03816at 4019.293 kb on + strand, within MPMX20_03816at 4019.293 kb on + strand, within MPMX20_03816at 4019.293 kb on + strand, within MPMX20_03816at 4019.293 kb on + strand, within MPMX20_03816at 4019.293 kb on + strand, within MPMX20_03816at 4019.301 kb on - strand, within MPMX20_03816at 4019.301 kb on - strand, within MPMX20_03816at 4019.301 kb on - strand, within MPMX20_03816at 4019.301 kb on - strand, within MPMX20_03816at 4019.301 kb on - strand, within MPMX20_03816at 4019.301 kb on - strand, within MPMX20_03816at 4019.385 kb on - strandat 4019.419 kb on + strandat 4019.496 kb on + strand, within MPMX20_03817at 4019.504 kb on - strand, within MPMX20_03817at 4019.573 kb on + strand, within MPMX20_03817at 4019.582 kb on - strand, within MPMX20_03817at 4019.621 kb on + strand, within MPMX20_03817at 4019.629 kb on - strand, within MPMX20_03817at 4019.701 kb on + strand, within MPMX20_03817at 4019.756 kb on - strand, within MPMX20_03817at 4019.756 kb on - strand, within MPMX20_03817at 4019.761 kb on + strand, within MPMX20_03817at 4019.799 kb on - strand, within MPMX20_03817at 4019.820 kb on - strand, within MPMX20_03817at 4019.831 kb on - strand, within MPMX20_03817at 4019.838 kb on + strand, within MPMX20_03817at 4019.838 kb on + strand, within MPMX20_03817at 4019.841 kb on - strand, within MPMX20_03817at 4019.841 kb on - strand, within MPMX20_03817at 4019.846 kb on - strand, within MPMX20_03817at 4019.846 kb on - strand, within MPMX20_03817at 4019.846 kb on - strand, within MPMX20_03817at 4019.846 kb on - strand, within MPMX20_03817at 4019.862 kb on - strand, within MPMX20_03817at 4019.956 kb on + strand, within MPMX20_03817at 4019.963 kb on - strand, within MPMX20_03817at 4019.964 kb on - strand, within MPMX20_03817at 4019.984 kb on - strand, within MPMX20_03817at 4020.063 kb on - strandat 4020.186 kb on - strandat 4020.207 kb on - strandat 4020.223 kb on - strandat 4020.225 kb on + strandat 4020.292 kb on + strandat 4020.292 kb on + strandat 4020.292 kb on + strandat 4020.300 kb on - strandat 4020.325 kb on + strandat 4020.369 kb on - strandat 4020.369 kb on - strandat 4020.539 kb on - strand, within MPMX20_03818at 4020.554 kb on - strand, within MPMX20_03818at 4020.609 kb on - strand, within MPMX20_03818at 4020.648 kb on + strand, within MPMX20_03818at 4020.707 kb on + strand, within MPMX20_03818at 4020.783 kb on + strand, within MPMX20_03818at 4020.790 kb on + strand, within MPMX20_03818at 4020.798 kb on - strand, within MPMX20_03818at 4020.822 kb on + strand, within MPMX20_03818at 4020.822 kb on + strand, within MPMX20_03818at 4020.829 kb on + strand, within MPMX20_03818at 4020.830 kb on - strand, within MPMX20_03818at 4020.837 kb on - strand, within MPMX20_03818at 4020.911 kb on - strand, within MPMX20_03818at 4020.950 kb on - strand, within MPMX20_03818at 4020.970 kb on - strand, within MPMX20_03818at 4020.979 kb on - strand, within MPMX20_03818at 4021.026 kb on + strand, within MPMX20_03818at 4021.033 kb on + strand, within MPMX20_03818at 4021.033 kb on + strand, within MPMX20_03818at 4021.033 kb on + strand, within MPMX20_03818at 4021.034 kb on - strand, within MPMX20_03818at 4021.041 kb on - strand, within MPMX20_03818at 4021.041 kb on - strand, within MPMX20_03818at 4021.082 kb on + strand, within MPMX20_03818at 4021.082 kb on + strand, within MPMX20_03818at 4021.082 kb on + strand, within MPMX20_03818at 4021.082 kb on + strand, within MPMX20_03818at 4021.082 kb on + strand, within MPMX20_03818at 4021.082 kb on + strand, within MPMX20_03818at 4021.082 kb on + strand, within MPMX20_03818at 4021.090 kb on - strand, within MPMX20_03818at 4021.090 kb on - strand, within MPMX20_03818at 4021.090 kb on - strand, within MPMX20_03818at 4021.090 kb on - strand, within MPMX20_03818at 4021.090 kb on - strand, within MPMX20_03818at 4021.090 kb on - strand, within MPMX20_03818at 4021.229 kb on + strandat 4021.323 kb on + strandat 4021.323 kb on + strandat 4021.343 kb on - strandat 4021.376 kb on - strand, within MPMX20_03819at 4021.429 kb on - strand, within MPMX20_03819at 4021.454 kb on + strand, within MPMX20_03819at 4021.464 kb on - strand, within MPMX20_03819at 4021.519 kb on + strand, within MPMX20_03819at 4021.519 kb on + strand, within MPMX20_03819at 4021.527 kb on - strand, within MPMX20_03819at 4021.527 kb on - strand, within MPMX20_03819at 4021.527 kb on - strand, within MPMX20_03819at 4021.565 kb on + strand, within MPMX20_03819at 4021.581 kb on - strand, within MPMX20_03819at 4021.592 kb on + strandat 4021.594 kb on - strandat 4021.653 kb on - strandat 4021.653 kb on - strandat 4021.662 kb on + strandat 4021.752 kb on - strandat 4021.802 kb on + strand, within MPMX20_03820at 4021.858 kb on + strand, within MPMX20_03820at 4021.859 kb on - strand, within MPMX20_03820at 4021.871 kb on - strand, within MPMX20_03820at 4021.891 kb on - strand, within MPMX20_03820at 4021.913 kb on - strand, within MPMX20_03820at 4021.928 kb on + strand, within MPMX20_03820at 4021.928 kb on + strand, within MPMX20_03820at 4021.936 kb on - strand, within MPMX20_03820at 4021.952 kb on - strand, within MPMX20_03820at 4021.969 kb on - strand, within MPMX20_03820at 4022.207 kb on - strand, within MPMX20_03820at 4022.224 kb on + strand, within MPMX20_03820at 4022.232 kb on - strand, within MPMX20_03820at 4022.280 kb on + strand, within MPMX20_03820at 4022.288 kb on - strand, within MPMX20_03820

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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4,019,274 + MPMX20_03816 0.61 -1.6
4,019,293 + MPMX20_03816 0.67 +1.3
4,019,293 + MPMX20_03816 0.67 -1.4
4,019,293 + MPMX20_03816 0.67 +0.6
4,019,293 + MPMX20_03816 0.67 -1.5
4,019,293 + MPMX20_03816 0.67 +3.1
4,019,293 + MPMX20_03816 0.67 -1.4
4,019,293 + MPMX20_03816 0.67 -1.0
4,019,293 + MPMX20_03816 0.67 -0.1
4,019,293 + MPMX20_03816 0.67 +0.9
4,019,293 + MPMX20_03816 0.67 -1.0
4,019,293 + MPMX20_03816 0.67 +0.5
4,019,301 - MPMX20_03816 0.69 -0.1
4,019,301 - MPMX20_03816 0.69 +0.7
4,019,301 - MPMX20_03816 0.69 -2.8
4,019,301 - MPMX20_03816 0.69 -1.5
4,019,301 - MPMX20_03816 0.69 +0.8
4,019,301 - MPMX20_03816 0.69 +1.7
4,019,385 - +0.9
4,019,419 + -1.2
4,019,496 + MPMX20_03817 0.13 -2.3
4,019,504 - MPMX20_03817 0.14 +0.5
4,019,573 + MPMX20_03817 0.24 +0.0
4,019,582 - MPMX20_03817 0.25 +0.9
4,019,621 + MPMX20_03817 0.31 +0.9
4,019,629 - MPMX20_03817 0.32 -2.8
4,019,701 + MPMX20_03817 0.42 +2.5
4,019,756 - MPMX20_03817 0.49 +1.5
4,019,756 - MPMX20_03817 0.49 -2.1
4,019,761 + MPMX20_03817 0.50 -0.6
4,019,799 - MPMX20_03817 0.55 +0.2
4,019,820 - MPMX20_03817 0.58 -0.1
4,019,831 - MPMX20_03817 0.60 +1.0
4,019,838 + MPMX20_03817 0.61 -0.2
4,019,838 + MPMX20_03817 0.61 -0.7
4,019,841 - MPMX20_03817 0.61 -0.5
4,019,841 - MPMX20_03817 0.61 +0.4
4,019,846 - MPMX20_03817 0.62 -1.6
4,019,846 - MPMX20_03817 0.62 +0.3
4,019,846 - MPMX20_03817 0.62 -1.9
4,019,846 - MPMX20_03817 0.62 +0.8
4,019,862 - MPMX20_03817 0.64 -1.3
4,019,956 + MPMX20_03817 0.77 +0.2
4,019,963 - MPMX20_03817 0.78 -2.0
4,019,964 - MPMX20_03817 0.78 -1.9
4,019,984 - MPMX20_03817 0.81 +3.5
4,020,063 - +0.4
4,020,186 - -0.1
4,020,207 - -0.5
4,020,223 - +0.2
4,020,225 + -0.3
4,020,292 + +0.6
4,020,292 + +1.0
4,020,292 + -0.1
4,020,300 - -2.3
4,020,325 + -0.5
4,020,369 - +1.7
4,020,369 - +0.5
4,020,539 - MPMX20_03818 0.26 -1.9
4,020,554 - MPMX20_03818 0.27 +0.6
4,020,609 - MPMX20_03818 0.33 -0.1
4,020,648 + MPMX20_03818 0.36 +0.4
4,020,707 + MPMX20_03818 0.42 +0.3
4,020,783 + MPMX20_03818 0.49 +0.5
4,020,790 + MPMX20_03818 0.50 +0.9
4,020,798 - MPMX20_03818 0.51 +1.1
4,020,822 + MPMX20_03818 0.53 +1.5
4,020,822 + MPMX20_03818 0.53 +2.5
4,020,829 + MPMX20_03818 0.54 +3.0
4,020,830 - MPMX20_03818 0.54 -0.5
4,020,837 - MPMX20_03818 0.54 -0.2
4,020,911 - MPMX20_03818 0.61 +1.5
4,020,950 - MPMX20_03818 0.65 +2.5
4,020,970 - MPMX20_03818 0.67 -2.1
4,020,979 - MPMX20_03818 0.68 +0.9
4,021,026 + MPMX20_03818 0.72 -1.5
4,021,033 + MPMX20_03818 0.73 -0.6
4,021,033 + MPMX20_03818 0.73 -1.9
4,021,033 + MPMX20_03818 0.73 +1.0
4,021,034 - MPMX20_03818 0.73 +0.9
4,021,041 - MPMX20_03818 0.74 +2.5
4,021,041 - MPMX20_03818 0.74 +0.5
4,021,082 + MPMX20_03818 0.78 -0.5
4,021,082 + MPMX20_03818 0.78 -0.5
4,021,082 + MPMX20_03818 0.78 -3.4
4,021,082 + MPMX20_03818 0.78 -1.1
4,021,082 + MPMX20_03818 0.78 +0.5
4,021,082 + MPMX20_03818 0.78 +0.8
4,021,082 + MPMX20_03818 0.78 -1.2
4,021,090 - MPMX20_03818 0.78 -2.2
4,021,090 - MPMX20_03818 0.78 -1.6
4,021,090 - MPMX20_03818 0.78 +1.4
4,021,090 - MPMX20_03818 0.78 -0.5
4,021,090 - MPMX20_03818 0.78 +0.7
4,021,090 - MPMX20_03818 0.78 +0.1
4,021,229 + +2.5
4,021,323 + -2.8
4,021,323 + -0.1
4,021,343 - -1.2
4,021,376 - MPMX20_03819 0.12 -2.1
4,021,429 - MPMX20_03819 0.31 +1.4
4,021,454 + MPMX20_03819 0.40 +0.2
4,021,464 - MPMX20_03819 0.44 -1.5
4,021,519 + MPMX20_03819 0.64 +0.0
4,021,519 + MPMX20_03819 0.64 -0.6
4,021,527 - MPMX20_03819 0.67 -0.1
4,021,527 - MPMX20_03819 0.67 +1.0
4,021,527 - MPMX20_03819 0.67 +1.5
4,021,565 + MPMX20_03819 0.81 +0.9
4,021,581 - MPMX20_03819 0.87 -2.6
4,021,592 + +0.9
4,021,594 - -3.2
4,021,653 - -2.2
4,021,653 - +0.7
4,021,662 + -0.4
4,021,752 - +0.8
4,021,802 + MPMX20_03820 0.12 -0.5
4,021,858 + MPMX20_03820 0.17 -1.9
4,021,859 - MPMX20_03820 0.17 +0.9
4,021,871 - MPMX20_03820 0.19 +2.9
4,021,891 - MPMX20_03820 0.20 -2.0
4,021,913 - MPMX20_03820 0.23 -0.8
4,021,928 + MPMX20_03820 0.24 -2.9
4,021,928 + MPMX20_03820 0.24 +0.5
4,021,936 - MPMX20_03820 0.25 +1.7
4,021,952 - MPMX20_03820 0.26 +0.2
4,021,969 - MPMX20_03820 0.28 +1.1
4,022,207 - MPMX20_03820 0.50 +0.4
4,022,224 + MPMX20_03820 0.51 -0.6
4,022,232 - MPMX20_03820 0.52 +0.0
4,022,280 + MPMX20_03820 0.56 -1.1
4,022,288 - MPMX20_03820 0.57 -1.9

Or see this region's nucleotide sequence