Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03816 and MPMX20_03817 overlap by 1 nucleotides MPMX20_03817 and MPMX20_03818 are separated by 144 nucleotides MPMX20_03818 and MPMX20_03819 are separated by 26 nucleotides MPMX20_03819 and MPMX20_03820 are separated by 53 nucleotides
MPMX20_03816: MPMX20_03816 - hypothetical protein, at 4,019,075 to 4,019,401
_03816
MPMX20_03817: MPMX20_03817 - tRNA (guanine-N(7)-)-methyltransferase, at 4,019,401 to 4,020,120
_03817
MPMX20_03818: MPMX20_03818 - Adenine DNA glycosylase, at 4,020,265 to 4,021,317
_03818
MPMX20_03819: MPMX20_03819 - putative Fe(2+)-trafficking protein, at 4,021,344 to 4,021,616
_03819
MPMX20_03820: MPMX20_03820 - Membrane-bound lytic murein transglycosylase C, at 4,021,670 to 4,022,749
_03820
Position (kb)
4020
4021
4022 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4019.274 kb on + strand, within MPMX20_03816 at 4019.293 kb on + strand, within MPMX20_03816 at 4019.293 kb on + strand, within MPMX20_03816 at 4019.293 kb on + strand, within MPMX20_03816 at 4019.293 kb on + strand, within MPMX20_03816 at 4019.293 kb on + strand, within MPMX20_03816 at 4019.293 kb on + strand, within MPMX20_03816 at 4019.293 kb on + strand, within MPMX20_03816 at 4019.293 kb on + strand, within MPMX20_03816 at 4019.293 kb on + strand, within MPMX20_03816 at 4019.293 kb on + strand, within MPMX20_03816 at 4019.293 kb on + strand, within MPMX20_03816 at 4019.301 kb on - strand, within MPMX20_03816 at 4019.301 kb on - strand, within MPMX20_03816 at 4019.301 kb on - strand, within MPMX20_03816 at 4019.301 kb on - strand, within MPMX20_03816 at 4019.301 kb on - strand, within MPMX20_03816 at 4019.301 kb on - strand, within MPMX20_03816 at 4019.385 kb on - strand at 4019.419 kb on + strand at 4019.496 kb on + strand, within MPMX20_03817 at 4019.504 kb on - strand, within MPMX20_03817 at 4019.573 kb on + strand, within MPMX20_03817 at 4019.582 kb on - strand, within MPMX20_03817 at 4019.621 kb on + strand, within MPMX20_03817 at 4019.629 kb on - strand, within MPMX20_03817 at 4019.701 kb on + strand, within MPMX20_03817 at 4019.756 kb on - strand, within MPMX20_03817 at 4019.756 kb on - strand, within MPMX20_03817 at 4019.761 kb on + strand, within MPMX20_03817 at 4019.799 kb on - strand, within MPMX20_03817 at 4019.820 kb on - strand, within MPMX20_03817 at 4019.831 kb on - strand, within MPMX20_03817 at 4019.838 kb on + strand, within MPMX20_03817 at 4019.838 kb on + strand, within MPMX20_03817 at 4019.841 kb on - strand, within MPMX20_03817 at 4019.841 kb on - strand, within MPMX20_03817 at 4019.846 kb on - strand, within MPMX20_03817 at 4019.846 kb on - strand, within MPMX20_03817 at 4019.846 kb on - strand, within MPMX20_03817 at 4019.846 kb on - strand, within MPMX20_03817 at 4019.862 kb on - strand, within MPMX20_03817 at 4019.956 kb on + strand, within MPMX20_03817 at 4019.963 kb on - strand, within MPMX20_03817 at 4019.964 kb on - strand, within MPMX20_03817 at 4019.984 kb on - strand, within MPMX20_03817 at 4020.063 kb on - strand at 4020.186 kb on - strand at 4020.207 kb on - strand at 4020.223 kb on - strand at 4020.225 kb on + strand at 4020.292 kb on + strand at 4020.292 kb on + strand at 4020.292 kb on + strand at 4020.300 kb on - strand at 4020.325 kb on + strand at 4020.369 kb on - strand at 4020.369 kb on - strand at 4020.539 kb on - strand, within MPMX20_03818 at 4020.554 kb on - strand, within MPMX20_03818 at 4020.609 kb on - strand, within MPMX20_03818 at 4020.648 kb on + strand, within MPMX20_03818 at 4020.707 kb on + strand, within MPMX20_03818 at 4020.783 kb on + strand, within MPMX20_03818 at 4020.790 kb on + strand, within MPMX20_03818 at 4020.798 kb on - strand, within MPMX20_03818 at 4020.822 kb on + strand, within MPMX20_03818 at 4020.822 kb on + strand, within MPMX20_03818 at 4020.829 kb on + strand, within MPMX20_03818 at 4020.830 kb on - strand, within MPMX20_03818 at 4020.837 kb on - strand, within MPMX20_03818 at 4020.911 kb on - strand, within MPMX20_03818 at 4020.950 kb on - strand, within MPMX20_03818 at 4020.970 kb on - strand, within MPMX20_03818 at 4020.979 kb on - strand, within MPMX20_03818 at 4021.026 kb on + strand, within MPMX20_03818 at 4021.033 kb on + strand, within MPMX20_03818 at 4021.033 kb on + strand, within MPMX20_03818 at 4021.033 kb on + strand, within MPMX20_03818 at 4021.034 kb on - strand, within MPMX20_03818 at 4021.041 kb on - strand, within MPMX20_03818 at 4021.041 kb on - strand, within MPMX20_03818 at 4021.082 kb on + strand, within MPMX20_03818 at 4021.082 kb on + strand, within MPMX20_03818 at 4021.082 kb on + strand, within MPMX20_03818 at 4021.082 kb on + strand, within MPMX20_03818 at 4021.082 kb on + strand, within MPMX20_03818 at 4021.082 kb on + strand, within MPMX20_03818 at 4021.082 kb on + strand, within MPMX20_03818 at 4021.090 kb on - strand, within MPMX20_03818 at 4021.090 kb on - strand, within MPMX20_03818 at 4021.090 kb on - strand, within MPMX20_03818 at 4021.090 kb on - strand, within MPMX20_03818 at 4021.090 kb on - strand, within MPMX20_03818 at 4021.090 kb on - strand, within MPMX20_03818 at 4021.229 kb on + strand at 4021.323 kb on + strand at 4021.323 kb on + strand at 4021.343 kb on - strand at 4021.376 kb on - strand, within MPMX20_03819 at 4021.429 kb on - strand, within MPMX20_03819 at 4021.454 kb on + strand, within MPMX20_03819 at 4021.464 kb on - strand, within MPMX20_03819 at 4021.519 kb on + strand, within MPMX20_03819 at 4021.519 kb on + strand, within MPMX20_03819 at 4021.527 kb on - strand, within MPMX20_03819 at 4021.527 kb on - strand, within MPMX20_03819 at 4021.527 kb on - strand, within MPMX20_03819 at 4021.565 kb on + strand, within MPMX20_03819 at 4021.581 kb on - strand, within MPMX20_03819 at 4021.592 kb on + strand at 4021.594 kb on - strand at 4021.653 kb on - strand at 4021.653 kb on - strand at 4021.662 kb on + strand at 4021.752 kb on - strand at 4021.802 kb on + strand, within MPMX20_03820 at 4021.858 kb on + strand, within MPMX20_03820 at 4021.859 kb on - strand, within MPMX20_03820 at 4021.871 kb on - strand, within MPMX20_03820 at 4021.891 kb on - strand, within MPMX20_03820 at 4021.913 kb on - strand, within MPMX20_03820 at 4021.928 kb on + strand, within MPMX20_03820 at 4021.928 kb on + strand, within MPMX20_03820 at 4021.936 kb on - strand, within MPMX20_03820 at 4021.952 kb on - strand, within MPMX20_03820 at 4021.969 kb on - strand, within MPMX20_03820 at 4022.207 kb on - strand, within MPMX20_03820 at 4022.224 kb on + strand, within MPMX20_03820 at 4022.232 kb on - strand, within MPMX20_03820 at 4022.280 kb on + strand, within MPMX20_03820 at 4022.288 kb on - strand, within MPMX20_03820
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 4,019,274 + MPMX20_03816 0.61 -1.6 4,019,293 + MPMX20_03816 0.67 +1.3 4,019,293 + MPMX20_03816 0.67 -1.4 4,019,293 + MPMX20_03816 0.67 +0.6 4,019,293 + MPMX20_03816 0.67 -1.5 4,019,293 + MPMX20_03816 0.67 +3.1 4,019,293 + MPMX20_03816 0.67 -1.4 4,019,293 + MPMX20_03816 0.67 -1.0 4,019,293 + MPMX20_03816 0.67 -0.1 4,019,293 + MPMX20_03816 0.67 +0.9 4,019,293 + MPMX20_03816 0.67 -1.0 4,019,293 + MPMX20_03816 0.67 +0.5 4,019,301 - MPMX20_03816 0.69 -0.1 4,019,301 - MPMX20_03816 0.69 +0.7 4,019,301 - MPMX20_03816 0.69 -2.8 4,019,301 - MPMX20_03816 0.69 -1.5 4,019,301 - MPMX20_03816 0.69 +0.8 4,019,301 - MPMX20_03816 0.69 +1.7 4,019,385 - +0.9 4,019,419 + -1.2 4,019,496 + MPMX20_03817 0.13 -2.3 4,019,504 - MPMX20_03817 0.14 +0.5 4,019,573 + MPMX20_03817 0.24 +0.0 4,019,582 - MPMX20_03817 0.25 +0.9 4,019,621 + MPMX20_03817 0.31 +0.9 4,019,629 - MPMX20_03817 0.32 -2.8 4,019,701 + MPMX20_03817 0.42 +2.5 4,019,756 - MPMX20_03817 0.49 +1.5 4,019,756 - MPMX20_03817 0.49 -2.1 4,019,761 + MPMX20_03817 0.50 -0.6 4,019,799 - MPMX20_03817 0.55 +0.2 4,019,820 - MPMX20_03817 0.58 -0.1 4,019,831 - MPMX20_03817 0.60 +1.0 4,019,838 + MPMX20_03817 0.61 -0.2 4,019,838 + MPMX20_03817 0.61 -0.7 4,019,841 - MPMX20_03817 0.61 -0.5 4,019,841 - MPMX20_03817 0.61 +0.4 4,019,846 - MPMX20_03817 0.62 -1.6 4,019,846 - MPMX20_03817 0.62 +0.3 4,019,846 - MPMX20_03817 0.62 -1.9 4,019,846 - MPMX20_03817 0.62 +0.8 4,019,862 - MPMX20_03817 0.64 -1.3 4,019,956 + MPMX20_03817 0.77 +0.2 4,019,963 - MPMX20_03817 0.78 -2.0 4,019,964 - MPMX20_03817 0.78 -1.9 4,019,984 - MPMX20_03817 0.81 +3.5 4,020,063 - +0.4 4,020,186 - -0.1 4,020,207 - -0.5 4,020,223 - +0.2 4,020,225 + -0.3 4,020,292 + +0.6 4,020,292 + +1.0 4,020,292 + -0.1 4,020,300 - -2.3 4,020,325 + -0.5 4,020,369 - +1.7 4,020,369 - +0.5 4,020,539 - MPMX20_03818 0.26 -1.9 4,020,554 - MPMX20_03818 0.27 +0.6 4,020,609 - MPMX20_03818 0.33 -0.1 4,020,648 + MPMX20_03818 0.36 +0.4 4,020,707 + MPMX20_03818 0.42 +0.3 4,020,783 + MPMX20_03818 0.49 +0.5 4,020,790 + MPMX20_03818 0.50 +0.9 4,020,798 - MPMX20_03818 0.51 +1.1 4,020,822 + MPMX20_03818 0.53 +1.5 4,020,822 + MPMX20_03818 0.53 +2.5 4,020,829 + MPMX20_03818 0.54 +3.0 4,020,830 - MPMX20_03818 0.54 -0.5 4,020,837 - MPMX20_03818 0.54 -0.2 4,020,911 - MPMX20_03818 0.61 +1.5 4,020,950 - MPMX20_03818 0.65 +2.5 4,020,970 - MPMX20_03818 0.67 -2.1 4,020,979 - MPMX20_03818 0.68 +0.9 4,021,026 + MPMX20_03818 0.72 -1.5 4,021,033 + MPMX20_03818 0.73 -0.6 4,021,033 + MPMX20_03818 0.73 -1.9 4,021,033 + MPMX20_03818 0.73 +1.0 4,021,034 - MPMX20_03818 0.73 +0.9 4,021,041 - MPMX20_03818 0.74 +2.5 4,021,041 - MPMX20_03818 0.74 +0.5 4,021,082 + MPMX20_03818 0.78 -0.5 4,021,082 + MPMX20_03818 0.78 -0.5 4,021,082 + MPMX20_03818 0.78 -3.4 4,021,082 + MPMX20_03818 0.78 -1.1 4,021,082 + MPMX20_03818 0.78 +0.5 4,021,082 + MPMX20_03818 0.78 +0.8 4,021,082 + MPMX20_03818 0.78 -1.2 4,021,090 - MPMX20_03818 0.78 -2.2 4,021,090 - MPMX20_03818 0.78 -1.6 4,021,090 - MPMX20_03818 0.78 +1.4 4,021,090 - MPMX20_03818 0.78 -0.5 4,021,090 - MPMX20_03818 0.78 +0.7 4,021,090 - MPMX20_03818 0.78 +0.1 4,021,229 + +2.5 4,021,323 + -2.8 4,021,323 + -0.1 4,021,343 - -1.2 4,021,376 - MPMX20_03819 0.12 -2.1 4,021,429 - MPMX20_03819 0.31 +1.4 4,021,454 + MPMX20_03819 0.40 +0.2 4,021,464 - MPMX20_03819 0.44 -1.5 4,021,519 + MPMX20_03819 0.64 +0.0 4,021,519 + MPMX20_03819 0.64 -0.6 4,021,527 - MPMX20_03819 0.67 -0.1 4,021,527 - MPMX20_03819 0.67 +1.0 4,021,527 - MPMX20_03819 0.67 +1.5 4,021,565 + MPMX20_03819 0.81 +0.9 4,021,581 - MPMX20_03819 0.87 -2.6 4,021,592 + +0.9 4,021,594 - -3.2 4,021,653 - -2.2 4,021,653 - +0.7 4,021,662 + -0.4 4,021,752 - +0.8 4,021,802 + MPMX20_03820 0.12 -0.5 4,021,858 + MPMX20_03820 0.17 -1.9 4,021,859 - MPMX20_03820 0.17 +0.9 4,021,871 - MPMX20_03820 0.19 +2.9 4,021,891 - MPMX20_03820 0.20 -2.0 4,021,913 - MPMX20_03820 0.23 -0.8 4,021,928 + MPMX20_03820 0.24 -2.9 4,021,928 + MPMX20_03820 0.24 +0.5 4,021,936 - MPMX20_03820 0.25 +1.7 4,021,952 - MPMX20_03820 0.26 +0.2 4,021,969 - MPMX20_03820 0.28 +1.1 4,022,207 - MPMX20_03820 0.50 +0.4 4,022,224 + MPMX20_03820 0.51 -0.6 4,022,232 - MPMX20_03820 0.52 +0.0 4,022,280 + MPMX20_03820 0.56 -1.1 4,022,288 - MPMX20_03820 0.57 -1.9
Or see this region's nucleotide sequence