Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03813

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03810 and MPMX20_03811 overlap by 4 nucleotidesMPMX20_03811 and MPMX20_03812 are separated by 3 nucleotidesMPMX20_03812 and MPMX20_03813 overlap by 8 nucleotidesMPMX20_03813 and MPMX20_03814 are separated by 63 nucleotidesMPMX20_03814 and MPMX20_03815 are separated by 61 nucleotides MPMX20_03810: MPMX20_03810 - hypothetical protein, at 4,015,223 to 4,015,789 _03810 MPMX20_03811: MPMX20_03811 - hypothetical protein, at 4,015,786 to 4,016,082 _03811 MPMX20_03812: MPMX20_03812 - dITP/XTP pyrophosphatase, at 4,016,086 to 4,016,679 _03812 MPMX20_03813: MPMX20_03813 - Heme chaperone HemW, at 4,016,672 to 4,017,814 _03813 MPMX20_03814: MPMX20_03814 - hypothetical protein, at 4,017,878 to 4,018,240 _03814 MPMX20_03815: MPMX20_03815 - hypothetical protein, at 4,018,302 to 4,019,018 _03815 Position (kb) 4016 4017 4018Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4015.711 kb on - strand, within MPMX20_03810at 4015.728 kb on + strand, within MPMX20_03810at 4015.738 kb on + strandat 4015.752 kb on - strandat 4015.795 kb on + strandat 4015.872 kb on + strand, within MPMX20_03811at 4015.880 kb on - strand, within MPMX20_03811at 4015.909 kb on - strand, within MPMX20_03811at 4016.076 kb on + strandat 4016.076 kb on + strandat 4016.076 kb on + strandat 4016.076 kb on + strandat 4016.076 kb on + strandat 4016.076 kb on + strandat 4016.076 kb on + strandat 4016.084 kb on - strandat 4016.084 kb on - strandat 4016.084 kb on - strandat 4016.084 kb on - strandat 4016.084 kb on - strandat 4016.171 kb on - strand, within MPMX20_03812at 4016.183 kb on + strand, within MPMX20_03812at 4016.195 kb on - strand, within MPMX20_03812at 4016.212 kb on + strand, within MPMX20_03812at 4016.313 kb on + strand, within MPMX20_03812at 4016.329 kb on + strand, within MPMX20_03812at 4016.431 kb on + strand, within MPMX20_03812at 4016.444 kb on + strand, within MPMX20_03812at 4016.444 kb on + strand, within MPMX20_03812at 4016.444 kb on - strand, within MPMX20_03812at 4016.446 kb on + strand, within MPMX20_03812at 4016.446 kb on + strand, within MPMX20_03812at 4016.446 kb on + strand, within MPMX20_03812at 4016.454 kb on - strand, within MPMX20_03812at 4016.475 kb on + strand, within MPMX20_03812at 4016.475 kb on + strand, within MPMX20_03812at 4016.483 kb on - strand, within MPMX20_03812at 4016.483 kb on - strand, within MPMX20_03812at 4016.483 kb on - strand, within MPMX20_03812at 4016.580 kb on + strand, within MPMX20_03812at 4016.604 kb on - strand, within MPMX20_03812at 4016.696 kb on - strandat 4016.710 kb on + strandat 4016.716 kb on - strandat 4016.718 kb on - strandat 4016.819 kb on + strand, within MPMX20_03813at 4017.020 kb on + strand, within MPMX20_03813at 4017.020 kb on + strand, within MPMX20_03813at 4017.028 kb on - strand, within MPMX20_03813at 4017.044 kb on + strand, within MPMX20_03813at 4017.052 kb on - strand, within MPMX20_03813at 4017.059 kb on - strand, within MPMX20_03813at 4017.093 kb on + strand, within MPMX20_03813at 4017.101 kb on - strand, within MPMX20_03813at 4017.101 kb on - strand, within MPMX20_03813at 4017.131 kb on + strand, within MPMX20_03813at 4017.132 kb on + strand, within MPMX20_03813at 4017.137 kb on + strand, within MPMX20_03813at 4017.140 kb on - strand, within MPMX20_03813at 4017.140 kb on - strand, within MPMX20_03813at 4017.140 kb on - strand, within MPMX20_03813at 4017.140 kb on - strand, within MPMX20_03813at 4017.241 kb on + strand, within MPMX20_03813at 4017.242 kb on - strand, within MPMX20_03813at 4017.257 kb on - strand, within MPMX20_03813at 4017.338 kb on - strand, within MPMX20_03813at 4017.342 kb on + strand, within MPMX20_03813at 4017.366 kb on + strand, within MPMX20_03813at 4017.483 kb on - strand, within MPMX20_03813at 4017.489 kb on + strand, within MPMX20_03813at 4017.497 kb on - strand, within MPMX20_03813at 4017.497 kb on - strand, within MPMX20_03813at 4017.550 kb on + strand, within MPMX20_03813at 4017.555 kb on + strand, within MPMX20_03813at 4017.555 kb on + strand, within MPMX20_03813at 4017.563 kb on - strand, within MPMX20_03813at 4017.640 kb on - strand, within MPMX20_03813at 4017.670 kb on + strand, within MPMX20_03813at 4017.868 kb on - strandat 4017.870 kb on + strandat 4017.870 kb on + strandat 4017.872 kb on - strandat 4017.878 kb on - strandat 4017.881 kb on + strandat 4017.907 kb on + strandat 4017.958 kb on - strand, within MPMX20_03814at 4017.999 kb on - strand, within MPMX20_03814at 4018.110 kb on + strand, within MPMX20_03814at 4018.112 kb on - strand, within MPMX20_03814at 4018.217 kb on + strandat 4018.217 kb on + strandat 4018.224 kb on - strandat 4018.225 kb on - strandat 4018.247 kb on - strandat 4018.256 kb on + strandat 4018.279 kb on - strandat 4018.279 kb on - strandat 4018.283 kb on + strandat 4018.283 kb on + strandat 4018.283 kb on + strandat 4018.283 kb on + strandat 4018.283 kb on + strandat 4018.283 kb on + strandat 4018.283 kb on + strandat 4018.283 kb on + strandat 4018.283 kb on + strandat 4018.285 kb on + strandat 4018.291 kb on - strandat 4018.291 kb on - strandat 4018.291 kb on - strandat 4018.291 kb on - strandat 4018.291 kb on - strandat 4018.291 kb on - strandat 4018.292 kb on - strandat 4018.312 kb on + strandat 4018.434 kb on + strand, within MPMX20_03815at 4018.434 kb on + strand, within MPMX20_03815at 4018.443 kb on + strand, within MPMX20_03815at 4018.482 kb on - strand, within MPMX20_03815at 4018.486 kb on + strand, within MPMX20_03815at 4018.494 kb on - strand, within MPMX20_03815at 4018.502 kb on + strand, within MPMX20_03815at 4018.502 kb on + strand, within MPMX20_03815at 4018.569 kb on - strand, within MPMX20_03815at 4018.573 kb on - strand, within MPMX20_03815at 4018.648 kb on + strand, within MPMX20_03815at 4018.654 kb on + strand, within MPMX20_03815at 4018.694 kb on + strand, within MPMX20_03815at 4018.751 kb on - strand, within MPMX20_03815at 4018.756 kb on - strand, within MPMX20_03815at 4018.770 kb on - strand, within MPMX20_03815

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
remove
4,015,711 - MPMX20_03810 0.86 +1.2
4,015,728 + MPMX20_03810 0.89 +1.1
4,015,738 + -1.1
4,015,752 - +0.2
4,015,795 + -0.9
4,015,872 + MPMX20_03811 0.29 -1.9
4,015,880 - MPMX20_03811 0.32 +0.3
4,015,909 - MPMX20_03811 0.41 -0.9
4,016,076 + -2.3
4,016,076 + -0.8
4,016,076 + -0.9
4,016,076 + -0.5
4,016,076 + -2.0
4,016,076 + +0.5
4,016,076 + -1.4
4,016,084 - +0.1
4,016,084 - -0.7
4,016,084 - +0.2
4,016,084 - +1.1
4,016,084 - -1.2
4,016,171 - MPMX20_03812 0.14 -1.7
4,016,183 + MPMX20_03812 0.16 -1.3
4,016,195 - MPMX20_03812 0.18 +3.8
4,016,212 + MPMX20_03812 0.21 -2.2
4,016,313 + MPMX20_03812 0.38 -1.9
4,016,329 + MPMX20_03812 0.41 -0.1
4,016,431 + MPMX20_03812 0.58 +3.2
4,016,444 + MPMX20_03812 0.60 -1.5
4,016,444 + MPMX20_03812 0.60 -0.7
4,016,444 - MPMX20_03812 0.60 -1.8
4,016,446 + MPMX20_03812 0.61 -0.7
4,016,446 + MPMX20_03812 0.61 -0.2
4,016,446 + MPMX20_03812 0.61 -0.3
4,016,454 - MPMX20_03812 0.62 +1.2
4,016,475 + MPMX20_03812 0.65 +2.2
4,016,475 + MPMX20_03812 0.65 -1.6
4,016,483 - MPMX20_03812 0.67 +0.2
4,016,483 - MPMX20_03812 0.67 -2.9
4,016,483 - MPMX20_03812 0.67 -1.5
4,016,580 + MPMX20_03812 0.83 -1.9
4,016,604 - MPMX20_03812 0.87 -0.8
4,016,696 - -1.5
4,016,710 + -2.5
4,016,716 - -2.3
4,016,718 - -0.7
4,016,819 + MPMX20_03813 0.13 -1.5
4,017,020 + MPMX20_03813 0.30 +1.0
4,017,020 + MPMX20_03813 0.30 -0.1
4,017,028 - MPMX20_03813 0.31 -0.3
4,017,044 + MPMX20_03813 0.33 -2.2
4,017,052 - MPMX20_03813 0.33 -1.3
4,017,059 - MPMX20_03813 0.34 -1.5
4,017,093 + MPMX20_03813 0.37 -2.6
4,017,101 - MPMX20_03813 0.38 -2.1
4,017,101 - MPMX20_03813 0.38 -1.7
4,017,131 + MPMX20_03813 0.40 -0.1
4,017,132 + MPMX20_03813 0.40 +0.2
4,017,137 + MPMX20_03813 0.41 -0.8
4,017,140 - MPMX20_03813 0.41 -0.6
4,017,140 - MPMX20_03813 0.41 -0.9
4,017,140 - MPMX20_03813 0.41 -2.9
4,017,140 - MPMX20_03813 0.41 -1.5
4,017,241 + MPMX20_03813 0.50 -1.6
4,017,242 - MPMX20_03813 0.50 +0.2
4,017,257 - MPMX20_03813 0.51 +0.2
4,017,338 - MPMX20_03813 0.58 -2.6
4,017,342 + MPMX20_03813 0.59 -0.9
4,017,366 + MPMX20_03813 0.61 -2.8
4,017,483 - MPMX20_03813 0.71 +0.2
4,017,489 + MPMX20_03813 0.71 -1.2
4,017,497 - MPMX20_03813 0.72 -1.1
4,017,497 - MPMX20_03813 0.72 +1.5
4,017,550 + MPMX20_03813 0.77 +0.5
4,017,555 + MPMX20_03813 0.77 -1.1
4,017,555 + MPMX20_03813 0.77 -0.3
4,017,563 - MPMX20_03813 0.78 -2.5
4,017,640 - MPMX20_03813 0.85 -1.7
4,017,670 + MPMX20_03813 0.87 -2.1
4,017,868 - -0.6
4,017,870 + +0.5
4,017,870 + -0.4
4,017,872 - -0.6
4,017,878 - -0.1
4,017,881 + -2.0
4,017,907 + +0.9
4,017,958 - MPMX20_03814 0.22 -2.1
4,017,999 - MPMX20_03814 0.33 +2.4
4,018,110 + MPMX20_03814 0.64 -0.6
4,018,112 - MPMX20_03814 0.64 +1.1
4,018,217 + +1.8
4,018,217 + +0.8
4,018,224 - +0.5
4,018,225 - +0.2
4,018,247 - +0.7
4,018,256 + +0.7
4,018,279 - -0.0
4,018,279 - +1.5
4,018,283 + -2.6
4,018,283 + -0.8
4,018,283 + -0.2
4,018,283 + +2.5
4,018,283 + -0.5
4,018,283 + -2.2
4,018,283 + +0.2
4,018,283 + +0.4
4,018,283 + +0.9
4,018,285 + -0.1
4,018,291 - -2.0
4,018,291 - -1.7
4,018,291 - -0.9
4,018,291 - -0.7
4,018,291 - -0.5
4,018,291 - -0.6
4,018,292 - +0.4
4,018,312 + +1.4
4,018,434 + MPMX20_03815 0.18 -0.1
4,018,434 + MPMX20_03815 0.18 +1.3
4,018,443 + MPMX20_03815 0.20 -0.5
4,018,482 - MPMX20_03815 0.25 -1.7
4,018,486 + MPMX20_03815 0.26 -0.3
4,018,494 - MPMX20_03815 0.27 +1.5
4,018,502 + MPMX20_03815 0.28 -1.1
4,018,502 + MPMX20_03815 0.28 -1.1
4,018,569 - MPMX20_03815 0.37 +0.2
4,018,573 - MPMX20_03815 0.38 +0.5
4,018,648 + MPMX20_03815 0.48 +1.4
4,018,654 + MPMX20_03815 0.49 -0.3
4,018,694 + MPMX20_03815 0.55 +2.5
4,018,751 - MPMX20_03815 0.63 +0.5
4,018,756 - MPMX20_03815 0.63 +1.2
4,018,770 - MPMX20_03815 0.65 +1.5

Or see this region's nucleotide sequence