Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03712

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03710 and MPMX20_03711 overlap by 8 nucleotidesMPMX20_03711 and MPMX20_03712 are separated by 12 nucleotidesMPMX20_03712 and MPMX20_03713 are separated by 14 nucleotides MPMX20_03710: MPMX20_03710 - Lactose transport system permease protein LacF, at 3,911,662 to 3,912,552 _03710 MPMX20_03711: MPMX20_03711 - Diacetylchitobiose uptake system permease protein DasC, at 3,912,545 to 3,913,447 _03711 MPMX20_03712: MPMX20_03712 - Diacetylchitobiose uptake system ATP-binding protein MsiK, at 3,913,460 to 3,914,587 _03712 MPMX20_03713: MPMX20_03713 - Putative ABC transporter substrate-binding protein YesO, at 3,914,602 to 3,915,888 _03713 Position (kb) 3913 3914 3915Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3912.516 kb on + strandat 3912.580 kb on - strandat 3912.655 kb on - strand, within MPMX20_03711at 3912.675 kb on - strand, within MPMX20_03711at 3912.676 kb on + strand, within MPMX20_03711at 3912.686 kb on + strand, within MPMX20_03711at 3912.713 kb on - strand, within MPMX20_03711at 3912.735 kb on + strand, within MPMX20_03711at 3912.741 kb on + strand, within MPMX20_03711at 3912.831 kb on + strand, within MPMX20_03711at 3912.839 kb on - strand, within MPMX20_03711at 3912.839 kb on - strand, within MPMX20_03711at 3912.839 kb on - strand, within MPMX20_03711at 3912.839 kb on - strand, within MPMX20_03711at 3912.839 kb on - strand, within MPMX20_03711at 3912.872 kb on - strand, within MPMX20_03711at 3912.887 kb on + strand, within MPMX20_03711at 3912.895 kb on - strand, within MPMX20_03711at 3912.895 kb on - strand, within MPMX20_03711at 3912.961 kb on + strand, within MPMX20_03711at 3912.961 kb on + strand, within MPMX20_03711at 3912.961 kb on + strand, within MPMX20_03711at 3912.961 kb on + strand, within MPMX20_03711at 3912.964 kb on - strand, within MPMX20_03711at 3912.964 kb on - strand, within MPMX20_03711at 3912.974 kb on - strand, within MPMX20_03711at 3912.974 kb on - strand, within MPMX20_03711at 3913.023 kb on + strand, within MPMX20_03711at 3913.031 kb on - strand, within MPMX20_03711at 3913.058 kb on + strand, within MPMX20_03711at 3913.058 kb on + strand, within MPMX20_03711at 3913.066 kb on - strand, within MPMX20_03711at 3913.113 kb on + strand, within MPMX20_03711at 3913.114 kb on + strand, within MPMX20_03711at 3913.148 kb on - strand, within MPMX20_03711at 3913.157 kb on + strand, within MPMX20_03711at 3913.203 kb on + strand, within MPMX20_03711at 3913.208 kb on + strand, within MPMX20_03711at 3913.213 kb on + strand, within MPMX20_03711at 3913.221 kb on - strand, within MPMX20_03711at 3913.318 kb on + strand, within MPMX20_03711at 3913.370 kb on - strandat 3913.400 kb on - strandat 3913.402 kb on + strandat 3913.405 kb on - strandat 3913.410 kb on - strandat 3913.412 kb on + strandat 3913.426 kb on - strandat 3913.450 kb on + strandat 3913.463 kb on + strandat 3913.480 kb on - strandat 3913.500 kb on - strandat 3913.500 kb on - strandat 3913.500 kb on - strandat 3913.500 kb on - strandat 3913.505 kb on - strandat 3913.524 kb on + strandat 3913.525 kb on - strandat 3913.532 kb on - strandat 3913.532 kb on - strandat 3913.559 kb on - strandat 3913.579 kb on - strand, within MPMX20_03712at 3913.595 kb on + strand, within MPMX20_03712at 3913.623 kb on + strand, within MPMX20_03712at 3913.649 kb on + strand, within MPMX20_03712at 3913.692 kb on - strand, within MPMX20_03712at 3913.726 kb on - strand, within MPMX20_03712at 3913.730 kb on - strand, within MPMX20_03712at 3913.758 kb on + strand, within MPMX20_03712at 3913.766 kb on - strand, within MPMX20_03712at 3913.766 kb on - strand, within MPMX20_03712at 3913.872 kb on + strand, within MPMX20_03712at 3913.872 kb on + strand, within MPMX20_03712at 3913.880 kb on - strand, within MPMX20_03712at 3913.897 kb on - strand, within MPMX20_03712at 3913.897 kb on - strand, within MPMX20_03712at 3913.922 kb on + strand, within MPMX20_03712at 3913.971 kb on + strand, within MPMX20_03712at 3913.997 kb on - strand, within MPMX20_03712at 3914.014 kb on - strand, within MPMX20_03712at 3914.057 kb on - strand, within MPMX20_03712at 3914.067 kb on - strand, within MPMX20_03712at 3914.071 kb on + strand, within MPMX20_03712at 3914.071 kb on + strand, within MPMX20_03712at 3914.079 kb on - strand, within MPMX20_03712at 3914.083 kb on + strand, within MPMX20_03712at 3914.127 kb on - strand, within MPMX20_03712at 3914.134 kb on - strand, within MPMX20_03712at 3914.137 kb on + strand, within MPMX20_03712at 3914.145 kb on - strand, within MPMX20_03712at 3914.312 kb on + strand, within MPMX20_03712at 3914.320 kb on - strand, within MPMX20_03712at 3914.330 kb on + strand, within MPMX20_03712at 3914.374 kb on + strand, within MPMX20_03712at 3914.382 kb on - strand, within MPMX20_03712at 3914.582 kb on + strandat 3914.590 kb on - strandat 3914.780 kb on - strand, within MPMX20_03713at 3914.782 kb on + strand, within MPMX20_03713at 3914.790 kb on - strand, within MPMX20_03713at 3914.790 kb on - strand, within MPMX20_03713at 3914.871 kb on - strand, within MPMX20_03713at 3914.871 kb on - strand, within MPMX20_03713at 3914.871 kb on - strand, within MPMX20_03713at 3914.991 kb on + strand, within MPMX20_03713at 3914.991 kb on + strand, within MPMX20_03713at 3914.991 kb on + strand, within MPMX20_03713at 3915.135 kb on + strand, within MPMX20_03713at 3915.135 kb on + strand, within MPMX20_03713at 3915.166 kb on + strand, within MPMX20_03713at 3915.167 kb on + strand, within MPMX20_03713at 3915.217 kb on - strand, within MPMX20_03713at 3915.270 kb on - strand, within MPMX20_03713at 3915.348 kb on + strand, within MPMX20_03713at 3915.439 kb on - strand, within MPMX20_03713at 3915.440 kb on - strand, within MPMX20_03713at 3915.522 kb on + strand, within MPMX20_03713at 3915.549 kb on + strand, within MPMX20_03713at 3915.575 kb on + strand, within MPMX20_03713at 3915.580 kb on + strand, within MPMX20_03713

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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3,912,516 + -0.5
3,912,580 - +0.3
3,912,655 - MPMX20_03711 0.12 +1.6
3,912,675 - MPMX20_03711 0.14 -2.2
3,912,676 + MPMX20_03711 0.15 +0.7
3,912,686 + MPMX20_03711 0.16 -0.5
3,912,713 - MPMX20_03711 0.19 +0.8
3,912,735 + MPMX20_03711 0.21 -0.9
3,912,741 + MPMX20_03711 0.22 +0.5
3,912,831 + MPMX20_03711 0.32 +1.2
3,912,839 - MPMX20_03711 0.33 +0.5
3,912,839 - MPMX20_03711 0.33 -0.8
3,912,839 - MPMX20_03711 0.33 -2.8
3,912,839 - MPMX20_03711 0.33 +0.9
3,912,839 - MPMX20_03711 0.33 -0.8
3,912,872 - MPMX20_03711 0.36 -0.6
3,912,887 + MPMX20_03711 0.38 +1.0
3,912,895 - MPMX20_03711 0.39 -0.6
3,912,895 - MPMX20_03711 0.39 -1.2
3,912,961 + MPMX20_03711 0.46 +1.5
3,912,961 + MPMX20_03711 0.46 -0.8
3,912,961 + MPMX20_03711 0.46 -1.5
3,912,961 + MPMX20_03711 0.46 +0.8
3,912,964 - MPMX20_03711 0.46 -2.8
3,912,964 - MPMX20_03711 0.46 +0.1
3,912,974 - MPMX20_03711 0.48 +0.5
3,912,974 - MPMX20_03711 0.48 -2.2
3,913,023 + MPMX20_03711 0.53 +0.2
3,913,031 - MPMX20_03711 0.54 +1.7
3,913,058 + MPMX20_03711 0.57 -1.7
3,913,058 + MPMX20_03711 0.57 -0.4
3,913,066 - MPMX20_03711 0.58 -1.6
3,913,113 + MPMX20_03711 0.63 -0.7
3,913,114 + MPMX20_03711 0.63 -3.1
3,913,148 - MPMX20_03711 0.67 +1.2
3,913,157 + MPMX20_03711 0.68 -2.5
3,913,203 + MPMX20_03711 0.73 +1.9
3,913,208 + MPMX20_03711 0.73 +2.7
3,913,213 + MPMX20_03711 0.74 +1.4
3,913,221 - MPMX20_03711 0.75 -0.8
3,913,318 + MPMX20_03711 0.86 -2.5
3,913,370 - +0.2
3,913,400 - +2.5
3,913,402 + -0.4
3,913,405 - +0.0
3,913,410 - -2.9
3,913,412 + -1.7
3,913,426 - -0.3
3,913,450 + +1.8
3,913,463 + +0.7
3,913,480 - +0.4
3,913,500 - -0.1
3,913,500 - -2.2
3,913,500 - -1.1
3,913,500 - +0.4
3,913,505 - -0.3
3,913,524 + +0.2
3,913,525 - -0.5
3,913,532 - -0.8
3,913,532 - -0.4
3,913,559 - -0.5
3,913,579 - MPMX20_03712 0.11 -0.1
3,913,595 + MPMX20_03712 0.12 -0.2
3,913,623 + MPMX20_03712 0.14 -0.8
3,913,649 + MPMX20_03712 0.17 -0.2
3,913,692 - MPMX20_03712 0.21 -0.4
3,913,726 - MPMX20_03712 0.24 -2.3
3,913,730 - MPMX20_03712 0.24 -2.8
3,913,758 + MPMX20_03712 0.26 +0.1
3,913,766 - MPMX20_03712 0.27 -1.5
3,913,766 - MPMX20_03712 0.27 -0.1
3,913,872 + MPMX20_03712 0.37 -1.7
3,913,872 + MPMX20_03712 0.37 -2.2
3,913,880 - MPMX20_03712 0.37 +1.6
3,913,897 - MPMX20_03712 0.39 -0.2
3,913,897 - MPMX20_03712 0.39 +0.2
3,913,922 + MPMX20_03712 0.41 +1.3
3,913,971 + MPMX20_03712 0.45 -0.1
3,913,997 - MPMX20_03712 0.48 -1.0
3,914,014 - MPMX20_03712 0.49 -0.1
3,914,057 - MPMX20_03712 0.53 +0.9
3,914,067 - MPMX20_03712 0.54 -1.3
3,914,071 + MPMX20_03712 0.54 -2.4
3,914,071 + MPMX20_03712 0.54 +1.3
3,914,079 - MPMX20_03712 0.55 -1.0
3,914,083 + MPMX20_03712 0.55 +1.1
3,914,127 - MPMX20_03712 0.59 +1.1
3,914,134 - MPMX20_03712 0.60 +0.7
3,914,137 + MPMX20_03712 0.60 -0.8
3,914,145 - MPMX20_03712 0.61 -0.1
3,914,312 + MPMX20_03712 0.76 -2.4
3,914,320 - MPMX20_03712 0.76 -0.6
3,914,330 + MPMX20_03712 0.77 -1.0
3,914,374 + MPMX20_03712 0.81 -0.9
3,914,382 - MPMX20_03712 0.82 -0.3
3,914,582 + +0.4
3,914,590 - -1.3
3,914,780 - MPMX20_03713 0.14 +1.5
3,914,782 + MPMX20_03713 0.14 +0.5
3,914,790 - MPMX20_03713 0.15 +0.4
3,914,790 - MPMX20_03713 0.15 -1.7
3,914,871 - MPMX20_03713 0.21 -2.3
3,914,871 - MPMX20_03713 0.21 +1.5
3,914,871 - MPMX20_03713 0.21 -0.8
3,914,991 + MPMX20_03713 0.30 +0.2
3,914,991 + MPMX20_03713 0.30 -1.1
3,914,991 + MPMX20_03713 0.30 -0.5
3,915,135 + MPMX20_03713 0.41 -2.6
3,915,135 + MPMX20_03713 0.41 -1.3
3,915,166 + MPMX20_03713 0.44 +0.9
3,915,167 + MPMX20_03713 0.44 -2.8
3,915,217 - MPMX20_03713 0.48 +1.5
3,915,270 - MPMX20_03713 0.52 -0.5
3,915,348 + MPMX20_03713 0.58 -3.1
3,915,439 - MPMX20_03713 0.65 +0.8
3,915,440 - MPMX20_03713 0.65 +3.5
3,915,522 + MPMX20_03713 0.71 -1.6
3,915,549 + MPMX20_03713 0.74 -0.1
3,915,575 + MPMX20_03713 0.76 -0.7
3,915,580 + MPMX20_03713 0.76 -0.0

Or see this region's nucleotide sequence