Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03710 and MPMX20_03711 overlap by 8 nucleotides MPMX20_03711 and MPMX20_03712 are separated by 12 nucleotides MPMX20_03712 and MPMX20_03713 are separated by 14 nucleotides
MPMX20_03710: MPMX20_03710 - Lactose transport system permease protein LacF, at 3,911,662 to 3,912,552
_03710
MPMX20_03711: MPMX20_03711 - Diacetylchitobiose uptake system permease protein DasC, at 3,912,545 to 3,913,447
_03711
MPMX20_03712: MPMX20_03712 - Diacetylchitobiose uptake system ATP-binding protein MsiK, at 3,913,460 to 3,914,587
_03712
MPMX20_03713: MPMX20_03713 - Putative ABC transporter substrate-binding protein YesO, at 3,914,602 to 3,915,888
_03713
Position (kb)
3913
3914
3915 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3912.516 kb on + strand at 3912.580 kb on - strand at 3912.655 kb on - strand, within MPMX20_03711 at 3912.675 kb on - strand, within MPMX20_03711 at 3912.676 kb on + strand, within MPMX20_03711 at 3912.686 kb on + strand, within MPMX20_03711 at 3912.713 kb on - strand, within MPMX20_03711 at 3912.735 kb on + strand, within MPMX20_03711 at 3912.741 kb on + strand, within MPMX20_03711 at 3912.831 kb on + strand, within MPMX20_03711 at 3912.839 kb on - strand, within MPMX20_03711 at 3912.839 kb on - strand, within MPMX20_03711 at 3912.839 kb on - strand, within MPMX20_03711 at 3912.839 kb on - strand, within MPMX20_03711 at 3912.839 kb on - strand, within MPMX20_03711 at 3912.872 kb on - strand, within MPMX20_03711 at 3912.887 kb on + strand, within MPMX20_03711 at 3912.895 kb on - strand, within MPMX20_03711 at 3912.895 kb on - strand, within MPMX20_03711 at 3912.961 kb on + strand, within MPMX20_03711 at 3912.961 kb on + strand, within MPMX20_03711 at 3912.961 kb on + strand, within MPMX20_03711 at 3912.961 kb on + strand, within MPMX20_03711 at 3912.964 kb on - strand, within MPMX20_03711 at 3912.964 kb on - strand, within MPMX20_03711 at 3912.974 kb on - strand, within MPMX20_03711 at 3912.974 kb on - strand, within MPMX20_03711 at 3913.023 kb on + strand, within MPMX20_03711 at 3913.031 kb on - strand, within MPMX20_03711 at 3913.058 kb on + strand, within MPMX20_03711 at 3913.058 kb on + strand, within MPMX20_03711 at 3913.066 kb on - strand, within MPMX20_03711 at 3913.113 kb on + strand, within MPMX20_03711 at 3913.114 kb on + strand, within MPMX20_03711 at 3913.148 kb on - strand, within MPMX20_03711 at 3913.157 kb on + strand, within MPMX20_03711 at 3913.203 kb on + strand, within MPMX20_03711 at 3913.208 kb on + strand, within MPMX20_03711 at 3913.213 kb on + strand, within MPMX20_03711 at 3913.221 kb on - strand, within MPMX20_03711 at 3913.318 kb on + strand, within MPMX20_03711 at 3913.370 kb on - strand at 3913.400 kb on - strand at 3913.402 kb on + strand at 3913.405 kb on - strand at 3913.410 kb on - strand at 3913.412 kb on + strand at 3913.426 kb on - strand at 3913.450 kb on + strand at 3913.463 kb on + strand at 3913.480 kb on - strand at 3913.500 kb on - strand at 3913.500 kb on - strand at 3913.500 kb on - strand at 3913.500 kb on - strand at 3913.505 kb on - strand at 3913.524 kb on + strand at 3913.525 kb on - strand at 3913.532 kb on - strand at 3913.532 kb on - strand at 3913.559 kb on - strand at 3913.579 kb on - strand, within MPMX20_03712 at 3913.595 kb on + strand, within MPMX20_03712 at 3913.623 kb on + strand, within MPMX20_03712 at 3913.649 kb on + strand, within MPMX20_03712 at 3913.692 kb on - strand, within MPMX20_03712 at 3913.726 kb on - strand, within MPMX20_03712 at 3913.730 kb on - strand, within MPMX20_03712 at 3913.758 kb on + strand, within MPMX20_03712 at 3913.766 kb on - strand, within MPMX20_03712 at 3913.766 kb on - strand, within MPMX20_03712 at 3913.872 kb on + strand, within MPMX20_03712 at 3913.872 kb on + strand, within MPMX20_03712 at 3913.880 kb on - strand, within MPMX20_03712 at 3913.897 kb on - strand, within MPMX20_03712 at 3913.897 kb on - strand, within MPMX20_03712 at 3913.922 kb on + strand, within MPMX20_03712 at 3913.971 kb on + strand, within MPMX20_03712 at 3913.997 kb on - strand, within MPMX20_03712 at 3914.014 kb on - strand, within MPMX20_03712 at 3914.057 kb on - strand, within MPMX20_03712 at 3914.067 kb on - strand, within MPMX20_03712 at 3914.071 kb on + strand, within MPMX20_03712 at 3914.071 kb on + strand, within MPMX20_03712 at 3914.079 kb on - strand, within MPMX20_03712 at 3914.083 kb on + strand, within MPMX20_03712 at 3914.127 kb on - strand, within MPMX20_03712 at 3914.134 kb on - strand, within MPMX20_03712 at 3914.137 kb on + strand, within MPMX20_03712 at 3914.145 kb on - strand, within MPMX20_03712 at 3914.312 kb on + strand, within MPMX20_03712 at 3914.320 kb on - strand, within MPMX20_03712 at 3914.330 kb on + strand, within MPMX20_03712 at 3914.374 kb on + strand, within MPMX20_03712 at 3914.382 kb on - strand, within MPMX20_03712 at 3914.582 kb on + strand at 3914.590 kb on - strand at 3914.780 kb on - strand, within MPMX20_03713 at 3914.782 kb on + strand, within MPMX20_03713 at 3914.790 kb on - strand, within MPMX20_03713 at 3914.790 kb on - strand, within MPMX20_03713 at 3914.871 kb on - strand, within MPMX20_03713 at 3914.871 kb on - strand, within MPMX20_03713 at 3914.871 kb on - strand, within MPMX20_03713 at 3914.991 kb on + strand, within MPMX20_03713 at 3914.991 kb on + strand, within MPMX20_03713 at 3914.991 kb on + strand, within MPMX20_03713 at 3915.135 kb on + strand, within MPMX20_03713 at 3915.135 kb on + strand, within MPMX20_03713 at 3915.166 kb on + strand, within MPMX20_03713 at 3915.167 kb on + strand, within MPMX20_03713 at 3915.217 kb on - strand, within MPMX20_03713 at 3915.270 kb on - strand, within MPMX20_03713 at 3915.348 kb on + strand, within MPMX20_03713 at 3915.439 kb on - strand, within MPMX20_03713 at 3915.440 kb on - strand, within MPMX20_03713 at 3915.522 kb on + strand, within MPMX20_03713 at 3915.549 kb on + strand, within MPMX20_03713 at 3915.575 kb on + strand, within MPMX20_03713 at 3915.580 kb on + strand, within MPMX20_03713
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 3,912,516 + -0.5 3,912,580 - +0.3 3,912,655 - MPMX20_03711 0.12 +1.6 3,912,675 - MPMX20_03711 0.14 -2.2 3,912,676 + MPMX20_03711 0.15 +0.7 3,912,686 + MPMX20_03711 0.16 -0.5 3,912,713 - MPMX20_03711 0.19 +0.8 3,912,735 + MPMX20_03711 0.21 -0.9 3,912,741 + MPMX20_03711 0.22 +0.5 3,912,831 + MPMX20_03711 0.32 +1.2 3,912,839 - MPMX20_03711 0.33 +0.5 3,912,839 - MPMX20_03711 0.33 -0.8 3,912,839 - MPMX20_03711 0.33 -2.8 3,912,839 - MPMX20_03711 0.33 +0.9 3,912,839 - MPMX20_03711 0.33 -0.8 3,912,872 - MPMX20_03711 0.36 -0.6 3,912,887 + MPMX20_03711 0.38 +1.0 3,912,895 - MPMX20_03711 0.39 -0.6 3,912,895 - MPMX20_03711 0.39 -1.2 3,912,961 + MPMX20_03711 0.46 +1.5 3,912,961 + MPMX20_03711 0.46 -0.8 3,912,961 + MPMX20_03711 0.46 -1.5 3,912,961 + MPMX20_03711 0.46 +0.8 3,912,964 - MPMX20_03711 0.46 -2.8 3,912,964 - MPMX20_03711 0.46 +0.1 3,912,974 - MPMX20_03711 0.48 +0.5 3,912,974 - MPMX20_03711 0.48 -2.2 3,913,023 + MPMX20_03711 0.53 +0.2 3,913,031 - MPMX20_03711 0.54 +1.7 3,913,058 + MPMX20_03711 0.57 -1.7 3,913,058 + MPMX20_03711 0.57 -0.4 3,913,066 - MPMX20_03711 0.58 -1.6 3,913,113 + MPMX20_03711 0.63 -0.7 3,913,114 + MPMX20_03711 0.63 -3.1 3,913,148 - MPMX20_03711 0.67 +1.2 3,913,157 + MPMX20_03711 0.68 -2.5 3,913,203 + MPMX20_03711 0.73 +1.9 3,913,208 + MPMX20_03711 0.73 +2.7 3,913,213 + MPMX20_03711 0.74 +1.4 3,913,221 - MPMX20_03711 0.75 -0.8 3,913,318 + MPMX20_03711 0.86 -2.5 3,913,370 - +0.2 3,913,400 - +2.5 3,913,402 + -0.4 3,913,405 - +0.0 3,913,410 - -2.9 3,913,412 + -1.7 3,913,426 - -0.3 3,913,450 + +1.8 3,913,463 + +0.7 3,913,480 - +0.4 3,913,500 - -0.1 3,913,500 - -2.2 3,913,500 - -1.1 3,913,500 - +0.4 3,913,505 - -0.3 3,913,524 + +0.2 3,913,525 - -0.5 3,913,532 - -0.8 3,913,532 - -0.4 3,913,559 - -0.5 3,913,579 - MPMX20_03712 0.11 -0.1 3,913,595 + MPMX20_03712 0.12 -0.2 3,913,623 + MPMX20_03712 0.14 -0.8 3,913,649 + MPMX20_03712 0.17 -0.2 3,913,692 - MPMX20_03712 0.21 -0.4 3,913,726 - MPMX20_03712 0.24 -2.3 3,913,730 - MPMX20_03712 0.24 -2.8 3,913,758 + MPMX20_03712 0.26 +0.1 3,913,766 - MPMX20_03712 0.27 -1.5 3,913,766 - MPMX20_03712 0.27 -0.1 3,913,872 + MPMX20_03712 0.37 -1.7 3,913,872 + MPMX20_03712 0.37 -2.2 3,913,880 - MPMX20_03712 0.37 +1.6 3,913,897 - MPMX20_03712 0.39 -0.2 3,913,897 - MPMX20_03712 0.39 +0.2 3,913,922 + MPMX20_03712 0.41 +1.3 3,913,971 + MPMX20_03712 0.45 -0.1 3,913,997 - MPMX20_03712 0.48 -1.0 3,914,014 - MPMX20_03712 0.49 -0.1 3,914,057 - MPMX20_03712 0.53 +0.9 3,914,067 - MPMX20_03712 0.54 -1.3 3,914,071 + MPMX20_03712 0.54 -2.4 3,914,071 + MPMX20_03712 0.54 +1.3 3,914,079 - MPMX20_03712 0.55 -1.0 3,914,083 + MPMX20_03712 0.55 +1.1 3,914,127 - MPMX20_03712 0.59 +1.1 3,914,134 - MPMX20_03712 0.60 +0.7 3,914,137 + MPMX20_03712 0.60 -0.8 3,914,145 - MPMX20_03712 0.61 -0.1 3,914,312 + MPMX20_03712 0.76 -2.4 3,914,320 - MPMX20_03712 0.76 -0.6 3,914,330 + MPMX20_03712 0.77 -1.0 3,914,374 + MPMX20_03712 0.81 -0.9 3,914,382 - MPMX20_03712 0.82 -0.3 3,914,582 + +0.4 3,914,590 - -1.3 3,914,780 - MPMX20_03713 0.14 +1.5 3,914,782 + MPMX20_03713 0.14 +0.5 3,914,790 - MPMX20_03713 0.15 +0.4 3,914,790 - MPMX20_03713 0.15 -1.7 3,914,871 - MPMX20_03713 0.21 -2.3 3,914,871 - MPMX20_03713 0.21 +1.5 3,914,871 - MPMX20_03713 0.21 -0.8 3,914,991 + MPMX20_03713 0.30 +0.2 3,914,991 + MPMX20_03713 0.30 -1.1 3,914,991 + MPMX20_03713 0.30 -0.5 3,915,135 + MPMX20_03713 0.41 -2.6 3,915,135 + MPMX20_03713 0.41 -1.3 3,915,166 + MPMX20_03713 0.44 +0.9 3,915,167 + MPMX20_03713 0.44 -2.8 3,915,217 - MPMX20_03713 0.48 +1.5 3,915,270 - MPMX20_03713 0.52 -0.5 3,915,348 + MPMX20_03713 0.58 -3.1 3,915,439 - MPMX20_03713 0.65 +0.8 3,915,440 - MPMX20_03713 0.65 +3.5 3,915,522 + MPMX20_03713 0.71 -1.6 3,915,549 + MPMX20_03713 0.74 -0.1 3,915,575 + MPMX20_03713 0.76 -0.7 3,915,580 + MPMX20_03713 0.76 -0.0
Or see this region's nucleotide sequence