Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03676 and MPMX20_03677 are separated by 209 nucleotides MPMX20_03677 and MPMX20_03678 are separated by 44 nucleotides MPMX20_03678 and MPMX20_03679 are separated by 44 nucleotides MPMX20_03679 and MPMX20_03680 are separated by 88 nucleotides
MPMX20_03676: MPMX20_03676 - Membrane-bound lytic murein transglycosylase A, at 3,870,462 to 3,871,559
_03676
MPMX20_03677: MPMX20_03677 - tRNA-Met, at 3,871,769 to 3,871,845
_03677
MPMX20_03678: MPMX20_03678 - tRNA-Met, at 3,871,890 to 3,871,966
_03678
MPMX20_03679: MPMX20_03679 - tRNA-Met, at 3,872,011 to 3,872,087
_03679
MPMX20_03680: MPMX20_03680 - N-acetylmuramoyl-L-alanine amidase AmiC, at 3,872,176 to 3,873,429
_03680
Position (kb)
3871
3872 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3870.920 kb on - strand, within MPMX20_03676 at 3870.939 kb on + strand, within MPMX20_03676 at 3870.972 kb on + strand, within MPMX20_03676 at 3870.980 kb on - strand, within MPMX20_03676 at 3870.980 kb on - strand, within MPMX20_03676 at 3871.011 kb on + strand, within MPMX20_03676 at 3871.019 kb on - strand, within MPMX20_03676 at 3871.079 kb on + strand, within MPMX20_03676 at 3871.117 kb on - strand, within MPMX20_03676 at 3871.176 kb on + strand, within MPMX20_03676 at 3871.277 kb on + strand, within MPMX20_03676 at 3871.302 kb on + strand, within MPMX20_03676 at 3871.302 kb on + strand, within MPMX20_03676 at 3871.302 kb on + strand, within MPMX20_03676 at 3871.310 kb on - strand, within MPMX20_03676 at 3871.310 kb on - strand, within MPMX20_03676 at 3871.310 kb on - strand, within MPMX20_03676 at 3871.310 kb on - strand, within MPMX20_03676 at 3871.401 kb on - strand, within MPMX20_03676 at 3871.414 kb on + strand, within MPMX20_03676 at 3871.441 kb on + strand, within MPMX20_03676 at 3871.467 kb on - strand at 3871.487 kb on + strand at 3871.495 kb on - strand at 3871.495 kb on - strand at 3871.539 kb on - strand at 3871.640 kb on - strand at 3871.703 kb on + strand at 3871.943 kb on + strand, within MPMX20_03678 at 3872.140 kb on + strand at 3872.156 kb on + strand at 3872.178 kb on + strand at 3872.181 kb on - strand at 3872.183 kb on + strand at 3872.186 kb on - strand at 3872.186 kb on - strand at 3872.283 kb on + strand at 3872.293 kb on - strand at 3872.317 kb on - strand, within MPMX20_03680 at 3872.341 kb on + strand, within MPMX20_03680 at 3872.347 kb on - strand, within MPMX20_03680 at 3872.349 kb on + strand, within MPMX20_03680 at 3872.362 kb on - strand, within MPMX20_03680 at 3872.372 kb on - strand, within MPMX20_03680 at 3872.372 kb on - strand, within MPMX20_03680 at 3872.394 kb on - strand, within MPMX20_03680 at 3872.427 kb on + strand, within MPMX20_03680 at 3872.441 kb on + strand, within MPMX20_03680 at 3872.506 kb on - strand, within MPMX20_03680 at 3872.520 kb on + strand, within MPMX20_03680 at 3872.520 kb on + strand, within MPMX20_03680 at 3872.520 kb on + strand, within MPMX20_03680 at 3872.528 kb on - strand, within MPMX20_03680 at 3872.528 kb on - strand, within MPMX20_03680 at 3872.528 kb on - strand, within MPMX20_03680 at 3872.574 kb on + strand, within MPMX20_03680 at 3872.610 kb on + strand, within MPMX20_03680 at 3872.660 kb on - strand, within MPMX20_03680 at 3872.844 kb on + strand, within MPMX20_03680 at 3872.844 kb on + strand, within MPMX20_03680 at 3872.868 kb on - strand, within MPMX20_03680 at 3872.905 kb on + strand, within MPMX20_03680 at 3872.938 kb on + strand, within MPMX20_03680 at 3872.951 kb on - strand, within MPMX20_03680
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 3,870,920 - MPMX20_03676 0.42 -1.5 3,870,939 + MPMX20_03676 0.43 +1.6 3,870,972 + MPMX20_03676 0.46 -0.3 3,870,980 - MPMX20_03676 0.47 -0.6 3,870,980 - MPMX20_03676 0.47 -0.9 3,871,011 + MPMX20_03676 0.50 +1.2 3,871,019 - MPMX20_03676 0.51 +4.1 3,871,079 + MPMX20_03676 0.56 +0.4 3,871,117 - MPMX20_03676 0.60 +0.5 3,871,176 + MPMX20_03676 0.65 -0.3 3,871,277 + MPMX20_03676 0.74 -0.9 3,871,302 + MPMX20_03676 0.77 -0.6 3,871,302 + MPMX20_03676 0.77 +0.1 3,871,302 + MPMX20_03676 0.77 -1.9 3,871,310 - MPMX20_03676 0.77 -2.4 3,871,310 - MPMX20_03676 0.77 -0.6 3,871,310 - MPMX20_03676 0.77 -1.2 3,871,310 - MPMX20_03676 0.77 +0.1 3,871,401 - MPMX20_03676 0.86 -0.3 3,871,414 + MPMX20_03676 0.87 +0.4 3,871,441 + MPMX20_03676 0.89 -2.3 3,871,467 - -1.8 3,871,487 + -0.1 3,871,495 - -0.3 3,871,495 - +0.2 3,871,539 - +1.5 3,871,640 - +0.5 3,871,703 + -0.9 3,871,943 + MPMX20_03678 0.69 -3.4 3,872,140 + +0.2 3,872,156 + +0.2 3,872,178 + +0.5 3,872,181 - -1.8 3,872,183 + +0.2 3,872,186 - +1.8 3,872,186 - -1.4 3,872,283 + -0.1 3,872,293 - -1.1 3,872,317 - MPMX20_03680 0.11 -1.2 3,872,341 + MPMX20_03680 0.13 +0.5 3,872,347 - MPMX20_03680 0.14 -0.8 3,872,349 + MPMX20_03680 0.14 -4.0 3,872,362 - MPMX20_03680 0.15 +0.9 3,872,372 - MPMX20_03680 0.16 +1.1 3,872,372 - MPMX20_03680 0.16 -1.6 3,872,394 - MPMX20_03680 0.17 -2.2 3,872,427 + MPMX20_03680 0.20 -2.8 3,872,441 + MPMX20_03680 0.21 -2.6 3,872,506 - MPMX20_03680 0.26 -0.9 3,872,520 + MPMX20_03680 0.27 +1.4 3,872,520 + MPMX20_03680 0.27 +1.5 3,872,520 + MPMX20_03680 0.27 -2.6 3,872,528 - MPMX20_03680 0.28 +0.3 3,872,528 - MPMX20_03680 0.28 -1.5 3,872,528 - MPMX20_03680 0.28 -1.9 3,872,574 + MPMX20_03680 0.32 -0.8 3,872,610 + MPMX20_03680 0.35 +0.0 3,872,660 - MPMX20_03680 0.39 -2.8 3,872,844 + MPMX20_03680 0.53 -0.1 3,872,844 + MPMX20_03680 0.53 -0.2 3,872,868 - MPMX20_03680 0.55 -1.3 3,872,905 + MPMX20_03680 0.58 -3.2 3,872,938 + MPMX20_03680 0.61 +0.4 3,872,951 - MPMX20_03680 0.62 +0.4
Or see this region's nucleotide sequence