Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03678

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03676 and MPMX20_03677 are separated by 209 nucleotidesMPMX20_03677 and MPMX20_03678 are separated by 44 nucleotidesMPMX20_03678 and MPMX20_03679 are separated by 44 nucleotidesMPMX20_03679 and MPMX20_03680 are separated by 88 nucleotides MPMX20_03676: MPMX20_03676 - Membrane-bound lytic murein transglycosylase A, at 3,870,462 to 3,871,559 _03676 MPMX20_03677: MPMX20_03677 - tRNA-Met, at 3,871,769 to 3,871,845 _03677 MPMX20_03678: MPMX20_03678 - tRNA-Met, at 3,871,890 to 3,871,966 _03678 MPMX20_03679: MPMX20_03679 - tRNA-Met, at 3,872,011 to 3,872,087 _03679 MPMX20_03680: MPMX20_03680 - N-acetylmuramoyl-L-alanine amidase AmiC, at 3,872,176 to 3,873,429 _03680 Position (kb) 3871 3872Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3870.920 kb on - strand, within MPMX20_03676at 3870.939 kb on + strand, within MPMX20_03676at 3870.972 kb on + strand, within MPMX20_03676at 3870.980 kb on - strand, within MPMX20_03676at 3870.980 kb on - strand, within MPMX20_03676at 3871.011 kb on + strand, within MPMX20_03676at 3871.019 kb on - strand, within MPMX20_03676at 3871.079 kb on + strand, within MPMX20_03676at 3871.117 kb on - strand, within MPMX20_03676at 3871.176 kb on + strand, within MPMX20_03676at 3871.277 kb on + strand, within MPMX20_03676at 3871.302 kb on + strand, within MPMX20_03676at 3871.302 kb on + strand, within MPMX20_03676at 3871.302 kb on + strand, within MPMX20_03676at 3871.310 kb on - strand, within MPMX20_03676at 3871.310 kb on - strand, within MPMX20_03676at 3871.310 kb on - strand, within MPMX20_03676at 3871.310 kb on - strand, within MPMX20_03676at 3871.401 kb on - strand, within MPMX20_03676at 3871.414 kb on + strand, within MPMX20_03676at 3871.441 kb on + strand, within MPMX20_03676at 3871.467 kb on - strandat 3871.487 kb on + strandat 3871.495 kb on - strandat 3871.495 kb on - strandat 3871.539 kb on - strandat 3871.640 kb on - strandat 3871.703 kb on + strandat 3871.943 kb on + strand, within MPMX20_03678at 3872.140 kb on + strandat 3872.156 kb on + strandat 3872.178 kb on + strandat 3872.181 kb on - strandat 3872.183 kb on + strandat 3872.186 kb on - strandat 3872.186 kb on - strandat 3872.283 kb on + strandat 3872.293 kb on - strandat 3872.317 kb on - strand, within MPMX20_03680at 3872.341 kb on + strand, within MPMX20_03680at 3872.347 kb on - strand, within MPMX20_03680at 3872.349 kb on + strand, within MPMX20_03680at 3872.362 kb on - strand, within MPMX20_03680at 3872.372 kb on - strand, within MPMX20_03680at 3872.372 kb on - strand, within MPMX20_03680at 3872.394 kb on - strand, within MPMX20_03680at 3872.427 kb on + strand, within MPMX20_03680at 3872.441 kb on + strand, within MPMX20_03680at 3872.506 kb on - strand, within MPMX20_03680at 3872.520 kb on + strand, within MPMX20_03680at 3872.520 kb on + strand, within MPMX20_03680at 3872.520 kb on + strand, within MPMX20_03680at 3872.528 kb on - strand, within MPMX20_03680at 3872.528 kb on - strand, within MPMX20_03680at 3872.528 kb on - strand, within MPMX20_03680at 3872.574 kb on + strand, within MPMX20_03680at 3872.610 kb on + strand, within MPMX20_03680at 3872.660 kb on - strand, within MPMX20_03680at 3872.844 kb on + strand, within MPMX20_03680at 3872.844 kb on + strand, within MPMX20_03680at 3872.868 kb on - strand, within MPMX20_03680at 3872.905 kb on + strand, within MPMX20_03680at 3872.938 kb on + strand, within MPMX20_03680at 3872.951 kb on - strand, within MPMX20_03680

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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3,870,920 - MPMX20_03676 0.42 -1.5
3,870,939 + MPMX20_03676 0.43 +1.6
3,870,972 + MPMX20_03676 0.46 -0.3
3,870,980 - MPMX20_03676 0.47 -0.6
3,870,980 - MPMX20_03676 0.47 -0.9
3,871,011 + MPMX20_03676 0.50 +1.2
3,871,019 - MPMX20_03676 0.51 +4.1
3,871,079 + MPMX20_03676 0.56 +0.4
3,871,117 - MPMX20_03676 0.60 +0.5
3,871,176 + MPMX20_03676 0.65 -0.3
3,871,277 + MPMX20_03676 0.74 -0.9
3,871,302 + MPMX20_03676 0.77 -0.6
3,871,302 + MPMX20_03676 0.77 +0.1
3,871,302 + MPMX20_03676 0.77 -1.9
3,871,310 - MPMX20_03676 0.77 -2.4
3,871,310 - MPMX20_03676 0.77 -0.6
3,871,310 - MPMX20_03676 0.77 -1.2
3,871,310 - MPMX20_03676 0.77 +0.1
3,871,401 - MPMX20_03676 0.86 -0.3
3,871,414 + MPMX20_03676 0.87 +0.4
3,871,441 + MPMX20_03676 0.89 -2.3
3,871,467 - -1.8
3,871,487 + -0.1
3,871,495 - -0.3
3,871,495 - +0.2
3,871,539 - +1.5
3,871,640 - +0.5
3,871,703 + -0.9
3,871,943 + MPMX20_03678 0.69 -3.4
3,872,140 + +0.2
3,872,156 + +0.2
3,872,178 + +0.5
3,872,181 - -1.8
3,872,183 + +0.2
3,872,186 - +1.8
3,872,186 - -1.4
3,872,283 + -0.1
3,872,293 - -1.1
3,872,317 - MPMX20_03680 0.11 -1.2
3,872,341 + MPMX20_03680 0.13 +0.5
3,872,347 - MPMX20_03680 0.14 -0.8
3,872,349 + MPMX20_03680 0.14 -4.0
3,872,362 - MPMX20_03680 0.15 +0.9
3,872,372 - MPMX20_03680 0.16 +1.1
3,872,372 - MPMX20_03680 0.16 -1.6
3,872,394 - MPMX20_03680 0.17 -2.2
3,872,427 + MPMX20_03680 0.20 -2.8
3,872,441 + MPMX20_03680 0.21 -2.6
3,872,506 - MPMX20_03680 0.26 -0.9
3,872,520 + MPMX20_03680 0.27 +1.4
3,872,520 + MPMX20_03680 0.27 +1.5
3,872,520 + MPMX20_03680 0.27 -2.6
3,872,528 - MPMX20_03680 0.28 +0.3
3,872,528 - MPMX20_03680 0.28 -1.5
3,872,528 - MPMX20_03680 0.28 -1.9
3,872,574 + MPMX20_03680 0.32 -0.8
3,872,610 + MPMX20_03680 0.35 +0.0
3,872,660 - MPMX20_03680 0.39 -2.8
3,872,844 + MPMX20_03680 0.53 -0.1
3,872,844 + MPMX20_03680 0.53 -0.2
3,872,868 - MPMX20_03680 0.55 -1.3
3,872,905 + MPMX20_03680 0.58 -3.2
3,872,938 + MPMX20_03680 0.61 +0.4
3,872,951 - MPMX20_03680 0.62 +0.4

Or see this region's nucleotide sequence