Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03633 and MPMX20_03634 are separated by 19 nucleotides MPMX20_03634 and MPMX20_03635 are separated by 166 nucleotides MPMX20_03635 and MPMX20_03636 are separated by 58 nucleotides MPMX20_03636 and MPMX20_03637 overlap by 1 nucleotides
MPMX20_03633: MPMX20_03633 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 3,821,492 to 3,822,202
_03633
MPMX20_03634: MPMX20_03634 - Cell division protein FtsB, at 3,822,222 to 3,822,533
_03634
MPMX20_03635: MPMX20_03635 - Inner membrane protein YgbE, at 3,822,700 to 3,823,026
_03635
MPMX20_03636: MPMX20_03636 - Adenylyl-sulfate kinase, at 3,823,085 to 3,823,690
_03636
MPMX20_03637: MPMX20_03637 - Sulfate adenylyltransferase subunit 1, at 3,823,690 to 3,825,114
_03637
Position (kb)
3823
3824 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3822.246 kb on - strand at 3822.246 kb on - strand at 3822.598 kb on - strand at 3822.610 kb on - strand at 3822.653 kb on + strand at 3822.653 kb on + strand at 3822.733 kb on + strand, within MPMX20_03635 at 3822.801 kb on + strand, within MPMX20_03635 at 3822.801 kb on + strand, within MPMX20_03635 at 3822.801 kb on + strand, within MPMX20_03635 at 3822.804 kb on - strand, within MPMX20_03635 at 3822.814 kb on - strand, within MPMX20_03635 at 3822.861 kb on - strand, within MPMX20_03635 at 3822.871 kb on - strand, within MPMX20_03635 at 3822.873 kb on + strand, within MPMX20_03635 at 3822.873 kb on + strand, within MPMX20_03635 at 3822.992 kb on - strand, within MPMX20_03635 at 3823.018 kb on + strand at 3823.018 kb on + strand at 3823.062 kb on + strand at 3823.084 kb on + strand at 3823.107 kb on + strand at 3823.112 kb on + strand at 3823.204 kb on - strand, within MPMX20_03636 at 3823.420 kb on + strand, within MPMX20_03636 at 3823.428 kb on - strand, within MPMX20_03636 at 3823.483 kb on - strand, within MPMX20_03636 at 3823.510 kb on + strand, within MPMX20_03636 at 3823.522 kb on + strand, within MPMX20_03636 at 3823.560 kb on + strand, within MPMX20_03636 at 3823.565 kb on + strand, within MPMX20_03636 at 3823.575 kb on + strand, within MPMX20_03636 at 3823.583 kb on - strand, within MPMX20_03636 at 3823.588 kb on + strand, within MPMX20_03636 at 3823.603 kb on - strand, within MPMX20_03636 at 3823.644 kb on - strand at 3823.644 kb on - strand at 3823.644 kb on - strand at 3823.670 kb on + strand at 3823.705 kb on - strand at 3823.784 kb on - strand at 3823.787 kb on + strand at 3823.787 kb on + strand at 3823.787 kb on + strand at 3823.808 kb on - strand at 3823.838 kb on - strand, within MPMX20_03637 at 3823.940 kb on - strand, within MPMX20_03637 at 3823.940 kb on - strand, within MPMX20_03637 at 3823.979 kb on - strand, within MPMX20_03637 at 3823.992 kb on + strand, within MPMX20_03637 at 3823.999 kb on - strand, within MPMX20_03637 at 3824.010 kb on - strand, within MPMX20_03637 at 3824.061 kb on - strand, within MPMX20_03637 at 3824.061 kb on - strand, within MPMX20_03637 at 3824.115 kb on - strand, within MPMX20_03637 at 3824.115 kb on - strand, within MPMX20_03637 at 3824.194 kb on + strand, within MPMX20_03637 at 3824.277 kb on - strand, within MPMX20_03637 at 3824.394 kb on - strand, within MPMX20_03637 at 3824.431 kb on - strand, within MPMX20_03637 at 3824.441 kb on - strand, within MPMX20_03637 at 3824.441 kb on - strand, within MPMX20_03637 at 3824.631 kb on - strand, within MPMX20_03637 at 3824.670 kb on - strand, within MPMX20_03637
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 3,822,246 - +3.8 3,822,246 - +1.4 3,822,598 - -0.3 3,822,610 - +0.0 3,822,653 + +0.5 3,822,653 + +2.3 3,822,733 + MPMX20_03635 0.10 -2.4 3,822,801 + MPMX20_03635 0.31 -1.0 3,822,801 + MPMX20_03635 0.31 -0.9 3,822,801 + MPMX20_03635 0.31 -0.8 3,822,804 - MPMX20_03635 0.32 -0.6 3,822,814 - MPMX20_03635 0.35 +0.2 3,822,861 - MPMX20_03635 0.49 -2.0 3,822,871 - MPMX20_03635 0.52 +0.5 3,822,873 + MPMX20_03635 0.53 +0.5 3,822,873 + MPMX20_03635 0.53 -2.0 3,822,992 - MPMX20_03635 0.89 +1.0 3,823,018 + -0.1 3,823,018 + -0.3 3,823,062 + +0.2 3,823,084 + +0.0 3,823,107 + -0.7 3,823,112 + -1.6 3,823,204 - MPMX20_03636 0.20 -2.4 3,823,420 + MPMX20_03636 0.55 -0.8 3,823,428 - MPMX20_03636 0.57 -1.9 3,823,483 - MPMX20_03636 0.66 -1.2 3,823,510 + MPMX20_03636 0.70 -1.5 3,823,522 + MPMX20_03636 0.72 +1.1 3,823,560 + MPMX20_03636 0.78 -0.7 3,823,565 + MPMX20_03636 0.79 -2.6 3,823,575 + MPMX20_03636 0.81 +0.5 3,823,583 - MPMX20_03636 0.82 -0.5 3,823,588 + MPMX20_03636 0.83 -1.3 3,823,603 - MPMX20_03636 0.85 -3.0 3,823,644 - +0.9 3,823,644 - -0.9 3,823,644 - -1.3 3,823,670 + -2.8 3,823,705 - +2.3 3,823,784 - -0.1 3,823,787 + -0.5 3,823,787 + -2.4 3,823,787 + -1.9 3,823,808 - -2.7 3,823,838 - MPMX20_03637 0.10 -1.3 3,823,940 - MPMX20_03637 0.18 +0.5 3,823,940 - MPMX20_03637 0.18 +1.5 3,823,979 - MPMX20_03637 0.20 -2.5 3,823,992 + MPMX20_03637 0.21 -0.3 3,823,999 - MPMX20_03637 0.22 -0.7 3,824,010 - MPMX20_03637 0.22 +2.3 3,824,061 - MPMX20_03637 0.26 +0.2 3,824,061 - MPMX20_03637 0.26 -0.7 3,824,115 - MPMX20_03637 0.30 +0.5 3,824,115 - MPMX20_03637 0.30 -0.0 3,824,194 + MPMX20_03637 0.35 -2.4 3,824,277 - MPMX20_03637 0.41 +1.2 3,824,394 - MPMX20_03637 0.49 +2.5 3,824,431 - MPMX20_03637 0.52 +1.1 3,824,441 - MPMX20_03637 0.53 +1.5 3,824,441 - MPMX20_03637 0.53 -1.0 3,824,631 - MPMX20_03637 0.66 +1.9 3,824,670 - MPMX20_03637 0.69 -1.8
Or see this region's nucleotide sequence