Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03601 and MPMX20_03602 are separated by 87 nucleotides MPMX20_03602 and MPMX20_03603 overlap by 8 nucleotides MPMX20_03603 and MPMX20_03604 overlap by 4 nucleotides
MPMX20_03601: MPMX20_03601 - Aryl-phospho-beta-D-glucosidase BglH, at 3,791,918 to 3,793,342
_03601
MPMX20_03602: MPMX20_03602 - Hydrogenase 3 maturation protease, at 3,793,430 to 3,793,885
_03602
MPMX20_03603: MPMX20_03603 - hypothetical protein, at 3,793,878 to 3,794,288
_03603
MPMX20_03604: MPMX20_03604 - Formate hydrogenlyase subunit 7, at 3,794,285 to 3,795,052
_03604
Position (kb)
3793
3794 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3792.444 kb on - strand, within MPMX20_03601 at 3792.467 kb on + strand, within MPMX20_03601 at 3792.494 kb on + strand, within MPMX20_03601 at 3792.499 kb on + strand, within MPMX20_03601 at 3792.499 kb on + strand, within MPMX20_03601 at 3792.502 kb on - strand, within MPMX20_03601 at 3792.502 kb on - strand, within MPMX20_03601 at 3792.509 kb on - strand, within MPMX20_03601 at 3792.559 kb on + strand, within MPMX20_03601 at 3792.602 kb on - strand, within MPMX20_03601 at 3792.618 kb on + strand, within MPMX20_03601 at 3792.626 kb on - strand, within MPMX20_03601 at 3792.626 kb on - strand, within MPMX20_03601 at 3792.649 kb on - strand, within MPMX20_03601 at 3792.662 kb on + strand, within MPMX20_03601 at 3792.670 kb on - strand, within MPMX20_03601 at 3792.701 kb on + strand, within MPMX20_03601 at 3792.742 kb on + strand, within MPMX20_03601 at 3792.750 kb on - strand, within MPMX20_03601 at 3792.809 kb on - strand, within MPMX20_03601 at 3793.126 kb on + strand, within MPMX20_03601 at 3793.177 kb on - strand, within MPMX20_03601 at 3793.177 kb on - strand, within MPMX20_03601 at 3793.184 kb on + strand, within MPMX20_03601 at 3793.187 kb on - strand, within MPMX20_03601 at 3793.187 kb on - strand, within MPMX20_03601 at 3793.187 kb on - strand, within MPMX20_03601 at 3793.220 kb on + strand at 3793.269 kb on - strand at 3793.273 kb on - strand at 3793.336 kb on + strand at 3793.336 kb on + strand at 3793.336 kb on + strand at 3793.344 kb on - strand at 3793.352 kb on - strand at 3793.357 kb on - strand at 3793.392 kb on + strand at 3793.392 kb on + strand at 3793.392 kb on + strand at 3793.392 kb on + strand at 3793.397 kb on + strand at 3793.428 kb on + strand at 3793.428 kb on + strand at 3793.476 kb on + strand, within MPMX20_03602 at 3793.476 kb on + strand, within MPMX20_03602 at 3793.642 kb on - strand, within MPMX20_03602 at 3793.667 kb on + strand, within MPMX20_03602 at 3793.699 kb on + strand, within MPMX20_03602 at 3793.785 kb on + strand, within MPMX20_03602 at 3793.806 kb on + strand, within MPMX20_03602 at 3793.839 kb on + strand, within MPMX20_03602 at 3793.868 kb on + strand at 3793.876 kb on - strand at 3793.885 kb on + strand at 3793.927 kb on + strand, within MPMX20_03603 at 3793.935 kb on - strand, within MPMX20_03603 at 3793.970 kb on + strand, within MPMX20_03603 at 3793.970 kb on + strand, within MPMX20_03603 at 3793.978 kb on - strand, within MPMX20_03603 at 3794.086 kb on + strand, within MPMX20_03603 at 3794.092 kb on + strand, within MPMX20_03603 at 3794.094 kb on - strand, within MPMX20_03603 at 3794.096 kb on + strand, within MPMX20_03603 at 3794.096 kb on + strand, within MPMX20_03603 at 3794.096 kb on + strand, within MPMX20_03603 at 3794.100 kb on - strand, within MPMX20_03603 at 3794.104 kb on - strand, within MPMX20_03603 at 3794.104 kb on - strand, within MPMX20_03603 at 3794.118 kb on - strand, within MPMX20_03603 at 3794.128 kb on + strand, within MPMX20_03603 at 3794.147 kb on - strand, within MPMX20_03603 at 3794.147 kb on - strand, within MPMX20_03603 at 3794.160 kb on + strand, within MPMX20_03603 at 3794.167 kb on + strand, within MPMX20_03603 at 3794.175 kb on + strand, within MPMX20_03603 at 3794.204 kb on - strand, within MPMX20_03603 at 3794.230 kb on + strand, within MPMX20_03603 at 3794.230 kb on + strand, within MPMX20_03603 at 3794.238 kb on - strand, within MPMX20_03603 at 3794.367 kb on - strand, within MPMX20_03604 at 3794.367 kb on - strand, within MPMX20_03604 at 3794.380 kb on + strand, within MPMX20_03604 at 3794.490 kb on + strand, within MPMX20_03604 at 3794.539 kb on + strand, within MPMX20_03604 at 3794.547 kb on - strand, within MPMX20_03604 at 3794.547 kb on - strand, within MPMX20_03604 at 3794.547 kb on - strand, within MPMX20_03604 at 3794.547 kb on - strand, within MPMX20_03604 at 3794.666 kb on - strand, within MPMX20_03604 at 3794.673 kb on + strand, within MPMX20_03604 at 3794.673 kb on + strand, within MPMX20_03604 at 3794.675 kb on + strand, within MPMX20_03604 at 3794.680 kb on + strand, within MPMX20_03604 at 3794.680 kb on + strand, within MPMX20_03604 at 3794.681 kb on - strand, within MPMX20_03604 at 3794.681 kb on - strand, within MPMX20_03604 at 3794.681 kb on - strand, within MPMX20_03604 at 3794.705 kb on + strand, within MPMX20_03604
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 3,792,444 - MPMX20_03601 0.37 +2.5 3,792,467 + MPMX20_03601 0.39 +1.9 3,792,494 + MPMX20_03601 0.40 -0.3 3,792,499 + MPMX20_03601 0.41 +1.1 3,792,499 + MPMX20_03601 0.41 -0.3 3,792,502 - MPMX20_03601 0.41 -1.8 3,792,502 - MPMX20_03601 0.41 +0.6 3,792,509 - MPMX20_03601 0.41 -0.8 3,792,559 + MPMX20_03601 0.45 +0.5 3,792,602 - MPMX20_03601 0.48 -0.8 3,792,618 + MPMX20_03601 0.49 +0.1 3,792,626 - MPMX20_03601 0.50 -0.7 3,792,626 - MPMX20_03601 0.50 -0.9 3,792,649 - MPMX20_03601 0.51 +1.5 3,792,662 + MPMX20_03601 0.52 -0.3 3,792,670 - MPMX20_03601 0.53 -1.5 3,792,701 + MPMX20_03601 0.55 +0.6 3,792,742 + MPMX20_03601 0.58 -1.5 3,792,750 - MPMX20_03601 0.58 +1.6 3,792,809 - MPMX20_03601 0.63 -1.7 3,793,126 + MPMX20_03601 0.85 +0.1 3,793,177 - MPMX20_03601 0.88 -0.2 3,793,177 - MPMX20_03601 0.88 -0.6 3,793,184 + MPMX20_03601 0.89 +0.2 3,793,187 - MPMX20_03601 0.89 -0.7 3,793,187 - MPMX20_03601 0.89 -0.1 3,793,187 - MPMX20_03601 0.89 +0.4 3,793,220 + -0.0 3,793,269 - +0.4 3,793,273 - +0.5 3,793,336 + -0.9 3,793,336 + +0.2 3,793,336 + +0.0 3,793,344 - -0.4 3,793,352 - -1.6 3,793,357 - +0.4 3,793,392 + -1.9 3,793,392 + -0.3 3,793,392 + -0.6 3,793,392 + -0.4 3,793,397 + +0.6 3,793,428 + -2.2 3,793,428 + -2.2 3,793,476 + MPMX20_03602 0.10 -1.6 3,793,476 + MPMX20_03602 0.10 -0.1 3,793,642 - MPMX20_03602 0.46 -1.1 3,793,667 + MPMX20_03602 0.52 -0.6 3,793,699 + MPMX20_03602 0.59 -1.7 3,793,785 + MPMX20_03602 0.78 -0.9 3,793,806 + MPMX20_03602 0.82 -1.6 3,793,839 + MPMX20_03602 0.90 -0.5 3,793,868 + -0.1 3,793,876 - +0.1 3,793,885 + -1.3 3,793,927 + MPMX20_03603 0.12 +0.5 3,793,935 - MPMX20_03603 0.14 -0.3 3,793,970 + MPMX20_03603 0.22 +0.1 3,793,970 + MPMX20_03603 0.22 -3.7 3,793,978 - MPMX20_03603 0.24 -2.7 3,794,086 + MPMX20_03603 0.51 -3.1 3,794,092 + MPMX20_03603 0.52 -0.7 3,794,094 - MPMX20_03603 0.53 -1.5 3,794,096 + MPMX20_03603 0.53 +1.9 3,794,096 + MPMX20_03603 0.53 -2.5 3,794,096 + MPMX20_03603 0.53 +1.2 3,794,100 - MPMX20_03603 0.54 -2.4 3,794,104 - MPMX20_03603 0.55 -2.6 3,794,104 - MPMX20_03603 0.55 +0.9 3,794,118 - MPMX20_03603 0.58 -0.5 3,794,128 + MPMX20_03603 0.61 +0.9 3,794,147 - MPMX20_03603 0.65 +2.5 3,794,147 - MPMX20_03603 0.65 -2.0 3,794,160 + MPMX20_03603 0.69 -1.2 3,794,167 + MPMX20_03603 0.70 +1.1 3,794,175 + MPMX20_03603 0.72 -1.1 3,794,204 - MPMX20_03603 0.79 +0.1 3,794,230 + MPMX20_03603 0.86 +2.1 3,794,230 + MPMX20_03603 0.86 +0.5 3,794,238 - MPMX20_03603 0.88 -0.5 3,794,367 - MPMX20_03604 0.11 +1.5 3,794,367 - MPMX20_03604 0.11 -1.2 3,794,380 + MPMX20_03604 0.12 -2.4 3,794,490 + MPMX20_03604 0.27 +0.2 3,794,539 + MPMX20_03604 0.33 -0.0 3,794,547 - MPMX20_03604 0.34 -2.2 3,794,547 - MPMX20_03604 0.34 -1.3 3,794,547 - MPMX20_03604 0.34 -3.1 3,794,547 - MPMX20_03604 0.34 +1.9 3,794,666 - MPMX20_03604 0.50 -0.5 3,794,673 + MPMX20_03604 0.51 -0.3 3,794,673 + MPMX20_03604 0.51 +0.2 3,794,675 + MPMX20_03604 0.51 -1.3 3,794,680 + MPMX20_03604 0.51 +0.3 3,794,680 + MPMX20_03604 0.51 -0.3 3,794,681 - MPMX20_03604 0.52 -2.7 3,794,681 - MPMX20_03604 0.52 -1.3 3,794,681 - MPMX20_03604 0.52 -1.2 3,794,705 + MPMX20_03604 0.55 +0.5
Or see this region's nucleotide sequence