Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03602

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03601 and MPMX20_03602 are separated by 87 nucleotidesMPMX20_03602 and MPMX20_03603 overlap by 8 nucleotidesMPMX20_03603 and MPMX20_03604 overlap by 4 nucleotides MPMX20_03601: MPMX20_03601 - Aryl-phospho-beta-D-glucosidase BglH, at 3,791,918 to 3,793,342 _03601 MPMX20_03602: MPMX20_03602 - Hydrogenase 3 maturation protease, at 3,793,430 to 3,793,885 _03602 MPMX20_03603: MPMX20_03603 - hypothetical protein, at 3,793,878 to 3,794,288 _03603 MPMX20_03604: MPMX20_03604 - Formate hydrogenlyase subunit 7, at 3,794,285 to 3,795,052 _03604 Position (kb) 3793 3794Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3792.444 kb on - strand, within MPMX20_03601at 3792.467 kb on + strand, within MPMX20_03601at 3792.494 kb on + strand, within MPMX20_03601at 3792.499 kb on + strand, within MPMX20_03601at 3792.499 kb on + strand, within MPMX20_03601at 3792.502 kb on - strand, within MPMX20_03601at 3792.502 kb on - strand, within MPMX20_03601at 3792.509 kb on - strand, within MPMX20_03601at 3792.559 kb on + strand, within MPMX20_03601at 3792.602 kb on - strand, within MPMX20_03601at 3792.618 kb on + strand, within MPMX20_03601at 3792.626 kb on - strand, within MPMX20_03601at 3792.626 kb on - strand, within MPMX20_03601at 3792.649 kb on - strand, within MPMX20_03601at 3792.662 kb on + strand, within MPMX20_03601at 3792.670 kb on - strand, within MPMX20_03601at 3792.701 kb on + strand, within MPMX20_03601at 3792.742 kb on + strand, within MPMX20_03601at 3792.750 kb on - strand, within MPMX20_03601at 3792.809 kb on - strand, within MPMX20_03601at 3793.126 kb on + strand, within MPMX20_03601at 3793.177 kb on - strand, within MPMX20_03601at 3793.177 kb on - strand, within MPMX20_03601at 3793.184 kb on + strand, within MPMX20_03601at 3793.187 kb on - strand, within MPMX20_03601at 3793.187 kb on - strand, within MPMX20_03601at 3793.187 kb on - strand, within MPMX20_03601at 3793.220 kb on + strandat 3793.269 kb on - strandat 3793.273 kb on - strandat 3793.336 kb on + strandat 3793.336 kb on + strandat 3793.336 kb on + strandat 3793.344 kb on - strandat 3793.352 kb on - strandat 3793.357 kb on - strandat 3793.392 kb on + strandat 3793.392 kb on + strandat 3793.392 kb on + strandat 3793.392 kb on + strandat 3793.397 kb on + strandat 3793.428 kb on + strandat 3793.428 kb on + strandat 3793.476 kb on + strand, within MPMX20_03602at 3793.476 kb on + strand, within MPMX20_03602at 3793.642 kb on - strand, within MPMX20_03602at 3793.667 kb on + strand, within MPMX20_03602at 3793.699 kb on + strand, within MPMX20_03602at 3793.785 kb on + strand, within MPMX20_03602at 3793.806 kb on + strand, within MPMX20_03602at 3793.839 kb on + strand, within MPMX20_03602at 3793.868 kb on + strandat 3793.876 kb on - strandat 3793.885 kb on + strandat 3793.927 kb on + strand, within MPMX20_03603at 3793.935 kb on - strand, within MPMX20_03603at 3793.970 kb on + strand, within MPMX20_03603at 3793.970 kb on + strand, within MPMX20_03603at 3793.978 kb on - strand, within MPMX20_03603at 3794.086 kb on + strand, within MPMX20_03603at 3794.092 kb on + strand, within MPMX20_03603at 3794.094 kb on - strand, within MPMX20_03603at 3794.096 kb on + strand, within MPMX20_03603at 3794.096 kb on + strand, within MPMX20_03603at 3794.096 kb on + strand, within MPMX20_03603at 3794.100 kb on - strand, within MPMX20_03603at 3794.104 kb on - strand, within MPMX20_03603at 3794.104 kb on - strand, within MPMX20_03603at 3794.118 kb on - strand, within MPMX20_03603at 3794.128 kb on + strand, within MPMX20_03603at 3794.147 kb on - strand, within MPMX20_03603at 3794.147 kb on - strand, within MPMX20_03603at 3794.160 kb on + strand, within MPMX20_03603at 3794.167 kb on + strand, within MPMX20_03603at 3794.175 kb on + strand, within MPMX20_03603at 3794.204 kb on - strand, within MPMX20_03603at 3794.230 kb on + strand, within MPMX20_03603at 3794.230 kb on + strand, within MPMX20_03603at 3794.238 kb on - strand, within MPMX20_03603at 3794.367 kb on - strand, within MPMX20_03604at 3794.367 kb on - strand, within MPMX20_03604at 3794.380 kb on + strand, within MPMX20_03604at 3794.490 kb on + strand, within MPMX20_03604at 3794.539 kb on + strand, within MPMX20_03604at 3794.547 kb on - strand, within MPMX20_03604at 3794.547 kb on - strand, within MPMX20_03604at 3794.547 kb on - strand, within MPMX20_03604at 3794.547 kb on - strand, within MPMX20_03604at 3794.666 kb on - strand, within MPMX20_03604at 3794.673 kb on + strand, within MPMX20_03604at 3794.673 kb on + strand, within MPMX20_03604at 3794.675 kb on + strand, within MPMX20_03604at 3794.680 kb on + strand, within MPMX20_03604at 3794.680 kb on + strand, within MPMX20_03604at 3794.681 kb on - strand, within MPMX20_03604at 3794.681 kb on - strand, within MPMX20_03604at 3794.681 kb on - strand, within MPMX20_03604at 3794.705 kb on + strand, within MPMX20_03604

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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3,792,444 - MPMX20_03601 0.37 +2.5
3,792,467 + MPMX20_03601 0.39 +1.9
3,792,494 + MPMX20_03601 0.40 -0.3
3,792,499 + MPMX20_03601 0.41 +1.1
3,792,499 + MPMX20_03601 0.41 -0.3
3,792,502 - MPMX20_03601 0.41 -1.8
3,792,502 - MPMX20_03601 0.41 +0.6
3,792,509 - MPMX20_03601 0.41 -0.8
3,792,559 + MPMX20_03601 0.45 +0.5
3,792,602 - MPMX20_03601 0.48 -0.8
3,792,618 + MPMX20_03601 0.49 +0.1
3,792,626 - MPMX20_03601 0.50 -0.7
3,792,626 - MPMX20_03601 0.50 -0.9
3,792,649 - MPMX20_03601 0.51 +1.5
3,792,662 + MPMX20_03601 0.52 -0.3
3,792,670 - MPMX20_03601 0.53 -1.5
3,792,701 + MPMX20_03601 0.55 +0.6
3,792,742 + MPMX20_03601 0.58 -1.5
3,792,750 - MPMX20_03601 0.58 +1.6
3,792,809 - MPMX20_03601 0.63 -1.7
3,793,126 + MPMX20_03601 0.85 +0.1
3,793,177 - MPMX20_03601 0.88 -0.2
3,793,177 - MPMX20_03601 0.88 -0.6
3,793,184 + MPMX20_03601 0.89 +0.2
3,793,187 - MPMX20_03601 0.89 -0.7
3,793,187 - MPMX20_03601 0.89 -0.1
3,793,187 - MPMX20_03601 0.89 +0.4
3,793,220 + -0.0
3,793,269 - +0.4
3,793,273 - +0.5
3,793,336 + -0.9
3,793,336 + +0.2
3,793,336 + +0.0
3,793,344 - -0.4
3,793,352 - -1.6
3,793,357 - +0.4
3,793,392 + -1.9
3,793,392 + -0.3
3,793,392 + -0.6
3,793,392 + -0.4
3,793,397 + +0.6
3,793,428 + -2.2
3,793,428 + -2.2
3,793,476 + MPMX20_03602 0.10 -1.6
3,793,476 + MPMX20_03602 0.10 -0.1
3,793,642 - MPMX20_03602 0.46 -1.1
3,793,667 + MPMX20_03602 0.52 -0.6
3,793,699 + MPMX20_03602 0.59 -1.7
3,793,785 + MPMX20_03602 0.78 -0.9
3,793,806 + MPMX20_03602 0.82 -1.6
3,793,839 + MPMX20_03602 0.90 -0.5
3,793,868 + -0.1
3,793,876 - +0.1
3,793,885 + -1.3
3,793,927 + MPMX20_03603 0.12 +0.5
3,793,935 - MPMX20_03603 0.14 -0.3
3,793,970 + MPMX20_03603 0.22 +0.1
3,793,970 + MPMX20_03603 0.22 -3.7
3,793,978 - MPMX20_03603 0.24 -2.7
3,794,086 + MPMX20_03603 0.51 -3.1
3,794,092 + MPMX20_03603 0.52 -0.7
3,794,094 - MPMX20_03603 0.53 -1.5
3,794,096 + MPMX20_03603 0.53 +1.9
3,794,096 + MPMX20_03603 0.53 -2.5
3,794,096 + MPMX20_03603 0.53 +1.2
3,794,100 - MPMX20_03603 0.54 -2.4
3,794,104 - MPMX20_03603 0.55 -2.6
3,794,104 - MPMX20_03603 0.55 +0.9
3,794,118 - MPMX20_03603 0.58 -0.5
3,794,128 + MPMX20_03603 0.61 +0.9
3,794,147 - MPMX20_03603 0.65 +2.5
3,794,147 - MPMX20_03603 0.65 -2.0
3,794,160 + MPMX20_03603 0.69 -1.2
3,794,167 + MPMX20_03603 0.70 +1.1
3,794,175 + MPMX20_03603 0.72 -1.1
3,794,204 - MPMX20_03603 0.79 +0.1
3,794,230 + MPMX20_03603 0.86 +2.1
3,794,230 + MPMX20_03603 0.86 +0.5
3,794,238 - MPMX20_03603 0.88 -0.5
3,794,367 - MPMX20_03604 0.11 +1.5
3,794,367 - MPMX20_03604 0.11 -1.2
3,794,380 + MPMX20_03604 0.12 -2.4
3,794,490 + MPMX20_03604 0.27 +0.2
3,794,539 + MPMX20_03604 0.33 -0.0
3,794,547 - MPMX20_03604 0.34 -2.2
3,794,547 - MPMX20_03604 0.34 -1.3
3,794,547 - MPMX20_03604 0.34 -3.1
3,794,547 - MPMX20_03604 0.34 +1.9
3,794,666 - MPMX20_03604 0.50 -0.5
3,794,673 + MPMX20_03604 0.51 -0.3
3,794,673 + MPMX20_03604 0.51 +0.2
3,794,675 + MPMX20_03604 0.51 -1.3
3,794,680 + MPMX20_03604 0.51 +0.3
3,794,680 + MPMX20_03604 0.51 -0.3
3,794,681 - MPMX20_03604 0.52 -2.7
3,794,681 - MPMX20_03604 0.52 -1.3
3,794,681 - MPMX20_03604 0.52 -1.2
3,794,705 + MPMX20_03604 0.55 +0.5

Or see this region's nucleotide sequence