Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03597 and MPMX20_03598 are separated by 6 nucleotides MPMX20_03598 and MPMX20_03599 are separated by 119 nucleotides MPMX20_03599 and MPMX20_03600 are separated by 214 nucleotides
MPMX20_03597: MPMX20_03597 - Carbamoyltransferase HypF, at 3,786,311 to 3,788,533
_03597
MPMX20_03598: MPMX20_03598 - Iron-sulfur protein, at 3,788,540 to 3,789,100
_03598
MPMX20_03599: MPMX20_03599 - HTH-type transcriptional regulator AscG, at 3,789,220 to 3,790,233
_03599
MPMX20_03600: MPMX20_03600 - PTS system beta-glucoside-specific EIIBCA component, at 3,790,448 to 3,791,899
_03600
Position (kb)
3789
3790
3791 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3788.298 kb on + strand, within MPMX20_03597 at 3788.303 kb on + strand, within MPMX20_03597 at 3788.359 kb on - strand at 3788.359 kb on - strand at 3788.413 kb on + strand at 3788.479 kb on + strand at 3788.480 kb on + strand at 3788.487 kb on + strand at 3788.487 kb on + strand at 3788.495 kb on - strand at 3788.504 kb on - strand at 3788.520 kb on - strand at 3788.520 kb on - strand at 3788.538 kb on + strand at 3788.609 kb on - strand, within MPMX20_03598 at 3788.627 kb on + strand, within MPMX20_03598 at 3788.635 kb on - strand, within MPMX20_03598 at 3788.658 kb on - strand, within MPMX20_03598 at 3788.731 kb on + strand, within MPMX20_03598 at 3788.739 kb on - strand, within MPMX20_03598 at 3788.889 kb on - strand, within MPMX20_03598 at 3788.898 kb on + strand, within MPMX20_03598 at 3788.898 kb on + strand, within MPMX20_03598 at 3788.984 kb on - strand, within MPMX20_03598 at 3788.984 kb on - strand, within MPMX20_03598 at 3789.001 kb on - strand, within MPMX20_03598 at 3789.059 kb on + strand at 3789.125 kb on - strand at 3789.146 kb on - strand at 3789.203 kb on - strand at 3789.255 kb on + strand at 3789.255 kb on + strand at 3789.255 kb on + strand at 3789.255 kb on + strand at 3789.255 kb on + strand at 3789.255 kb on + strand at 3789.255 kb on + strand at 3789.255 kb on + strand at 3789.470 kb on - strand, within MPMX20_03599 at 3789.644 kb on + strand, within MPMX20_03599 at 3789.727 kb on + strand, within MPMX20_03599 at 3789.755 kb on - strand, within MPMX20_03599 at 3789.761 kb on - strand, within MPMX20_03599 at 3789.881 kb on - strand, within MPMX20_03599 at 3789.926 kb on + strand, within MPMX20_03599 at 3789.926 kb on + strand, within MPMX20_03599 at 3789.931 kb on + strand, within MPMX20_03599 at 3789.954 kb on + strand, within MPMX20_03599 at 3790.028 kb on - strand, within MPMX20_03599 at 3790.040 kb on + strand, within MPMX20_03599 at 3790.046 kb on - strand, within MPMX20_03599 at 3790.164 kb on - strand at 3790.268 kb on + strand at 3790.268 kb on + strand at 3790.274 kb on - strand at 3790.274 kb on - strand at 3790.274 kb on - strand at 3790.274 kb on - strand at 3790.274 kb on - strand at 3790.276 kb on - strand at 3790.276 kb on - strand at 3790.276 kb on - strand at 3790.276 kb on - strand at 3790.518 kb on + strand at 3790.580 kb on - strand at 3790.660 kb on + strand, within MPMX20_03600 at 3790.740 kb on - strand, within MPMX20_03600 at 3790.777 kb on + strand, within MPMX20_03600 at 3790.883 kb on + strand, within MPMX20_03600 at 3790.892 kb on - strand, within MPMX20_03600 at 3790.892 kb on - strand, within MPMX20_03600 at 3790.893 kb on + strand, within MPMX20_03600 at 3790.898 kb on - strand, within MPMX20_03600 at 3790.948 kb on - strand, within MPMX20_03600 at 3791.021 kb on - strand, within MPMX20_03600 at 3791.058 kb on - strand, within MPMX20_03600 at 3791.138 kb on - strand, within MPMX20_03600 at 3791.140 kb on + strand, within MPMX20_03600 at 3791.170 kb on - strand, within MPMX20_03600
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 3,788,298 + MPMX20_03597 0.89 +1.1 3,788,303 + MPMX20_03597 0.90 -1.1 3,788,359 - -1.8 3,788,359 - +3.2 3,788,413 + -1.1 3,788,479 + -0.1 3,788,480 + -0.1 3,788,487 + +2.1 3,788,487 + +1.6 3,788,495 - +0.8 3,788,504 - -2.1 3,788,520 - -1.1 3,788,520 - -1.2 3,788,538 + -1.5 3,788,609 - MPMX20_03598 0.12 +0.2 3,788,627 + MPMX20_03598 0.16 -1.1 3,788,635 - MPMX20_03598 0.17 -3.9 3,788,658 - MPMX20_03598 0.21 -2.6 3,788,731 + MPMX20_03598 0.34 +2.5 3,788,739 - MPMX20_03598 0.35 -0.2 3,788,889 - MPMX20_03598 0.62 -0.1 3,788,898 + MPMX20_03598 0.64 -0.1 3,788,898 + MPMX20_03598 0.64 -0.5 3,788,984 - MPMX20_03598 0.79 +0.2 3,788,984 - MPMX20_03598 0.79 +0.2 3,789,001 - MPMX20_03598 0.82 +0.5 3,789,059 + -2.1 3,789,125 - +0.2 3,789,146 - -1.8 3,789,203 - -3.2 3,789,255 + +0.3 3,789,255 + +0.9 3,789,255 + -3.0 3,789,255 + -1.0 3,789,255 + +2.5 3,789,255 + -2.8 3,789,255 + -0.1 3,789,255 + -1.0 3,789,470 - MPMX20_03599 0.25 -1.5 3,789,644 + MPMX20_03599 0.42 +1.4 3,789,727 + MPMX20_03599 0.50 +2.5 3,789,755 - MPMX20_03599 0.53 -0.9 3,789,761 - MPMX20_03599 0.53 +0.9 3,789,881 - MPMX20_03599 0.65 -1.3 3,789,926 + MPMX20_03599 0.70 +0.2 3,789,926 + MPMX20_03599 0.70 +1.5 3,789,931 + MPMX20_03599 0.70 -0.8 3,789,954 + MPMX20_03599 0.72 -0.4 3,790,028 - MPMX20_03599 0.80 +1.5 3,790,040 + MPMX20_03599 0.81 -0.5 3,790,046 - MPMX20_03599 0.81 +0.4 3,790,164 - -1.4 3,790,268 + +1.5 3,790,268 + -2.8 3,790,274 - +0.9 3,790,274 - -1.6 3,790,274 - +3.3 3,790,274 - -2.1 3,790,274 - +1.5 3,790,276 - -0.6 3,790,276 - +0.3 3,790,276 - +0.2 3,790,276 - -0.7 3,790,518 + -2.1 3,790,580 - -0.5 3,790,660 + MPMX20_03600 0.15 +2.0 3,790,740 - MPMX20_03600 0.20 +0.4 3,790,777 + MPMX20_03600 0.23 +1.6 3,790,883 + MPMX20_03600 0.30 +0.1 3,790,892 - MPMX20_03600 0.31 +0.7 3,790,892 - MPMX20_03600 0.31 -2.1 3,790,893 + MPMX20_03600 0.31 -1.2 3,790,898 - MPMX20_03600 0.31 +1.1 3,790,948 - MPMX20_03600 0.34 -1.9 3,791,021 - MPMX20_03600 0.39 -0.9 3,791,058 - MPMX20_03600 0.42 -2.3 3,791,138 - MPMX20_03600 0.48 -0.0 3,791,140 + MPMX20_03600 0.48 -2.4 3,791,170 - MPMX20_03600 0.50 +2.3
Or see this region's nucleotide sequence