Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03599

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03597 and MPMX20_03598 are separated by 6 nucleotidesMPMX20_03598 and MPMX20_03599 are separated by 119 nucleotidesMPMX20_03599 and MPMX20_03600 are separated by 214 nucleotides MPMX20_03597: MPMX20_03597 - Carbamoyltransferase HypF, at 3,786,311 to 3,788,533 _03597 MPMX20_03598: MPMX20_03598 - Iron-sulfur protein, at 3,788,540 to 3,789,100 _03598 MPMX20_03599: MPMX20_03599 - HTH-type transcriptional regulator AscG, at 3,789,220 to 3,790,233 _03599 MPMX20_03600: MPMX20_03600 - PTS system beta-glucoside-specific EIIBCA component, at 3,790,448 to 3,791,899 _03600 Position (kb) 3789 3790 3791Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3788.298 kb on + strand, within MPMX20_03597at 3788.303 kb on + strand, within MPMX20_03597at 3788.359 kb on - strandat 3788.359 kb on - strandat 3788.413 kb on + strandat 3788.479 kb on + strandat 3788.480 kb on + strandat 3788.487 kb on + strandat 3788.487 kb on + strandat 3788.495 kb on - strandat 3788.504 kb on - strandat 3788.520 kb on - strandat 3788.520 kb on - strandat 3788.538 kb on + strandat 3788.609 kb on - strand, within MPMX20_03598at 3788.627 kb on + strand, within MPMX20_03598at 3788.635 kb on - strand, within MPMX20_03598at 3788.658 kb on - strand, within MPMX20_03598at 3788.731 kb on + strand, within MPMX20_03598at 3788.739 kb on - strand, within MPMX20_03598at 3788.889 kb on - strand, within MPMX20_03598at 3788.898 kb on + strand, within MPMX20_03598at 3788.898 kb on + strand, within MPMX20_03598at 3788.984 kb on - strand, within MPMX20_03598at 3788.984 kb on - strand, within MPMX20_03598at 3789.001 kb on - strand, within MPMX20_03598at 3789.059 kb on + strandat 3789.125 kb on - strandat 3789.146 kb on - strandat 3789.203 kb on - strandat 3789.255 kb on + strandat 3789.255 kb on + strandat 3789.255 kb on + strandat 3789.255 kb on + strandat 3789.255 kb on + strandat 3789.255 kb on + strandat 3789.255 kb on + strandat 3789.255 kb on + strandat 3789.470 kb on - strand, within MPMX20_03599at 3789.644 kb on + strand, within MPMX20_03599at 3789.727 kb on + strand, within MPMX20_03599at 3789.755 kb on - strand, within MPMX20_03599at 3789.761 kb on - strand, within MPMX20_03599at 3789.881 kb on - strand, within MPMX20_03599at 3789.926 kb on + strand, within MPMX20_03599at 3789.926 kb on + strand, within MPMX20_03599at 3789.931 kb on + strand, within MPMX20_03599at 3789.954 kb on + strand, within MPMX20_03599at 3790.028 kb on - strand, within MPMX20_03599at 3790.040 kb on + strand, within MPMX20_03599at 3790.046 kb on - strand, within MPMX20_03599at 3790.164 kb on - strandat 3790.268 kb on + strandat 3790.268 kb on + strandat 3790.274 kb on - strandat 3790.274 kb on - strandat 3790.274 kb on - strandat 3790.274 kb on - strandat 3790.274 kb on - strandat 3790.276 kb on - strandat 3790.276 kb on - strandat 3790.276 kb on - strandat 3790.276 kb on - strandat 3790.518 kb on + strandat 3790.580 kb on - strandat 3790.660 kb on + strand, within MPMX20_03600at 3790.740 kb on - strand, within MPMX20_03600at 3790.777 kb on + strand, within MPMX20_03600at 3790.883 kb on + strand, within MPMX20_03600at 3790.892 kb on - strand, within MPMX20_03600at 3790.892 kb on - strand, within MPMX20_03600at 3790.893 kb on + strand, within MPMX20_03600at 3790.898 kb on - strand, within MPMX20_03600at 3790.948 kb on - strand, within MPMX20_03600at 3791.021 kb on - strand, within MPMX20_03600at 3791.058 kb on - strand, within MPMX20_03600at 3791.138 kb on - strand, within MPMX20_03600at 3791.140 kb on + strand, within MPMX20_03600at 3791.170 kb on - strand, within MPMX20_03600

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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3,788,298 + MPMX20_03597 0.89 +1.1
3,788,303 + MPMX20_03597 0.90 -1.1
3,788,359 - -1.8
3,788,359 - +3.2
3,788,413 + -1.1
3,788,479 + -0.1
3,788,480 + -0.1
3,788,487 + +2.1
3,788,487 + +1.6
3,788,495 - +0.8
3,788,504 - -2.1
3,788,520 - -1.1
3,788,520 - -1.2
3,788,538 + -1.5
3,788,609 - MPMX20_03598 0.12 +0.2
3,788,627 + MPMX20_03598 0.16 -1.1
3,788,635 - MPMX20_03598 0.17 -3.9
3,788,658 - MPMX20_03598 0.21 -2.6
3,788,731 + MPMX20_03598 0.34 +2.5
3,788,739 - MPMX20_03598 0.35 -0.2
3,788,889 - MPMX20_03598 0.62 -0.1
3,788,898 + MPMX20_03598 0.64 -0.1
3,788,898 + MPMX20_03598 0.64 -0.5
3,788,984 - MPMX20_03598 0.79 +0.2
3,788,984 - MPMX20_03598 0.79 +0.2
3,789,001 - MPMX20_03598 0.82 +0.5
3,789,059 + -2.1
3,789,125 - +0.2
3,789,146 - -1.8
3,789,203 - -3.2
3,789,255 + +0.3
3,789,255 + +0.9
3,789,255 + -3.0
3,789,255 + -1.0
3,789,255 + +2.5
3,789,255 + -2.8
3,789,255 + -0.1
3,789,255 + -1.0
3,789,470 - MPMX20_03599 0.25 -1.5
3,789,644 + MPMX20_03599 0.42 +1.4
3,789,727 + MPMX20_03599 0.50 +2.5
3,789,755 - MPMX20_03599 0.53 -0.9
3,789,761 - MPMX20_03599 0.53 +0.9
3,789,881 - MPMX20_03599 0.65 -1.3
3,789,926 + MPMX20_03599 0.70 +0.2
3,789,926 + MPMX20_03599 0.70 +1.5
3,789,931 + MPMX20_03599 0.70 -0.8
3,789,954 + MPMX20_03599 0.72 -0.4
3,790,028 - MPMX20_03599 0.80 +1.5
3,790,040 + MPMX20_03599 0.81 -0.5
3,790,046 - MPMX20_03599 0.81 +0.4
3,790,164 - -1.4
3,790,268 + +1.5
3,790,268 + -2.8
3,790,274 - +0.9
3,790,274 - -1.6
3,790,274 - +3.3
3,790,274 - -2.1
3,790,274 - +1.5
3,790,276 - -0.6
3,790,276 - +0.3
3,790,276 - +0.2
3,790,276 - -0.7
3,790,518 + -2.1
3,790,580 - -0.5
3,790,660 + MPMX20_03600 0.15 +2.0
3,790,740 - MPMX20_03600 0.20 +0.4
3,790,777 + MPMX20_03600 0.23 +1.6
3,790,883 + MPMX20_03600 0.30 +0.1
3,790,892 - MPMX20_03600 0.31 +0.7
3,790,892 - MPMX20_03600 0.31 -2.1
3,790,893 + MPMX20_03600 0.31 -1.2
3,790,898 - MPMX20_03600 0.31 +1.1
3,790,948 - MPMX20_03600 0.34 -1.9
3,791,021 - MPMX20_03600 0.39 -0.9
3,791,058 - MPMX20_03600 0.42 -2.3
3,791,138 - MPMX20_03600 0.48 -0.0
3,791,140 + MPMX20_03600 0.48 -2.4
3,791,170 - MPMX20_03600 0.50 +2.3

Or see this region's nucleotide sequence