Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03569 and MPMX20_03570 overlap by 4 nucleotides MPMX20_03570 and MPMX20_03571 are separated by 264 nucleotides MPMX20_03571 and MPMX20_03572 are separated by 158 nucleotides MPMX20_03572 and MPMX20_03573 are separated by 161 nucleotides MPMX20_03573 and MPMX20_03574 are separated by 52 nucleotides MPMX20_03574 and MPMX20_03575 overlap by 61 nucleotides MPMX20_03575 and MPMX20_03576 are separated by 4 nucleotides
MPMX20_03569: MPMX20_03569 - Inner membrane protein YqaA, at 3,764,048 to 3,764,476
_03569
MPMX20_03570: MPMX20_03570 - Fructose-1-phosphate phosphatase YqaB, at 3,764,473 to 3,765,039
_03570
MPMX20_03571: MPMX20_03571 - tRNA-Arg, at 3,765,304 to 3,765,380
_03571
MPMX20_03572: MPMX20_03572 - tRNA-Arg, at 3,765,539 to 3,765,615
_03572
MPMX20_03573: MPMX20_03573 - tRNA-Arg, at 3,765,777 to 3,765,853
_03573
MPMX20_03574: MPMX20_03574 - tRNA-Arg, at 3,765,906 to 3,765,978
_03574
MPMX20_03575: MPMX20_03575 - tRNA-Arg, at 3,765,918 to 3,765,994
_03575
MPMX20_03576: MPMX20_03576 - tRNA-Ser, at 3,765,999 to 3,766,091
_03576
Position (kb)
3765
3766 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 3764.314 kb on - strand, within MPMX20_03569 at 3764.314 kb on - strand, within MPMX20_03569 at 3764.322 kb on + strand, within MPMX20_03569 at 3764.352 kb on + strand, within MPMX20_03569 at 3764.357 kb on + strand, within MPMX20_03569 at 3764.368 kb on + strand, within MPMX20_03569 at 3764.372 kb on + strand, within MPMX20_03569 at 3764.479 kb on - strand at 3764.484 kb on - strand at 3764.560 kb on - strand, within MPMX20_03570 at 3764.580 kb on + strand, within MPMX20_03570 at 3764.588 kb on - strand, within MPMX20_03570 at 3764.667 kb on + strand, within MPMX20_03570 at 3764.675 kb on - strand, within MPMX20_03570 at 3764.675 kb on - strand, within MPMX20_03570 at 3764.675 kb on - strand, within MPMX20_03570 at 3764.675 kb on - strand, within MPMX20_03570 at 3764.675 kb on - strand, within MPMX20_03570 at 3764.708 kb on - strand, within MPMX20_03570 at 3764.738 kb on - strand, within MPMX20_03570 at 3764.783 kb on - strand, within MPMX20_03570 at 3764.957 kb on + strand, within MPMX20_03570 at 3764.960 kb on - strand, within MPMX20_03570 at 3764.986 kb on + strand at 3764.994 kb on - strand at 3764.994 kb on - strand at 3764.994 kb on - strand at 3765.020 kb on + strand at 3765.022 kb on + strand at 3765.030 kb on - strand at 3765.191 kb on - strand at 3765.355 kb on + strand, within MPMX20_03571 at 3765.473 kb on - strand at 3765.473 kb on - strand at 3765.473 kb on - strand at 3765.475 kb on + strand at 3765.515 kb on + strand at 3765.528 kb on - strand at 3765.628 kb on - strand at 3765.647 kb on - strand at 3766.328 kb on + strand at 3766.328 kb on + strand at 3766.349 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 3,764,314 - MPMX20_03569 0.62 +0.8 3,764,314 - MPMX20_03569 0.62 +0.2 3,764,322 + MPMX20_03569 0.64 +0.6 3,764,352 + MPMX20_03569 0.71 +0.2 3,764,357 + MPMX20_03569 0.72 -0.8 3,764,368 + MPMX20_03569 0.75 +0.8 3,764,372 + MPMX20_03569 0.76 +0.1 3,764,479 - -1.6 3,764,484 - +0.4 3,764,560 - MPMX20_03570 0.15 +4.8 3,764,580 + MPMX20_03570 0.19 -1.9 3,764,588 - MPMX20_03570 0.20 +1.2 3,764,667 + MPMX20_03570 0.34 +0.5 3,764,675 - MPMX20_03570 0.36 -0.3 3,764,675 - MPMX20_03570 0.36 -2.8 3,764,675 - MPMX20_03570 0.36 +3.0 3,764,675 - MPMX20_03570 0.36 -1.5 3,764,675 - MPMX20_03570 0.36 +0.5 3,764,708 - MPMX20_03570 0.41 -0.8 3,764,738 - MPMX20_03570 0.47 +1.5 3,764,783 - MPMX20_03570 0.55 -1.7 3,764,957 + MPMX20_03570 0.85 +0.6 3,764,960 - MPMX20_03570 0.86 -2.6 3,764,986 + -3.9 3,764,994 - +2.0 3,764,994 - -1.4 3,764,994 - +0.2 3,765,020 + +0.7 3,765,022 + -0.1 3,765,030 - -1.6 3,765,191 - -0.4 3,765,355 + MPMX20_03571 0.66 -1.7 3,765,473 - +0.2 3,765,473 - -2.4 3,765,473 - -3.1 3,765,475 + -3.4 3,765,515 + -2.8 3,765,528 - -1.6 3,765,628 - -3.0 3,765,647 - +1.8 3,766,328 + -0.1 3,766,328 + -1.5 3,766,349 - -2.1
Or see this region's nucleotide sequence