Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03375

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03374 and MPMX20_03375 are separated by 11 nucleotidesMPMX20_03375 and MPMX20_03376 are separated by 278 nucleotides MPMX20_03374: MPMX20_03374 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, at 3,551,775 to 3,553,700 _03374 MPMX20_03375: MPMX20_03375 - Putative 3-oxopropanoate dehydrogenase, at 3,553,712 to 3,555,217 _03375 MPMX20_03376: MPMX20_03376 - HTH-type transcriptional regulator MurR, at 3,555,496 to 3,556,326 _03376 Position (kb) 3553 3554 3555 3556Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3552.877 kb on - strand, within MPMX20_03374at 3552.886 kb on - strand, within MPMX20_03374at 3552.886 kb on - strand, within MPMX20_03374at 3553.002 kb on - strand, within MPMX20_03374at 3553.048 kb on + strand, within MPMX20_03374at 3553.070 kb on + strand, within MPMX20_03374at 3553.099 kb on - strand, within MPMX20_03374at 3553.100 kb on + strand, within MPMX20_03374at 3553.101 kb on + strand, within MPMX20_03374at 3553.113 kb on + strand, within MPMX20_03374at 3553.220 kb on + strand, within MPMX20_03374at 3553.291 kb on + strand, within MPMX20_03374at 3553.338 kb on + strand, within MPMX20_03374at 3553.357 kb on - strand, within MPMX20_03374at 3553.359 kb on - strand, within MPMX20_03374at 3553.432 kb on + strand, within MPMX20_03374at 3553.467 kb on - strand, within MPMX20_03374at 3553.487 kb on + strand, within MPMX20_03374at 3553.523 kb on - strandat 3553.523 kb on - strandat 3553.523 kb on - strandat 3553.543 kb on - strandat 3553.646 kb on - strandat 3553.676 kb on - strandat 3553.705 kb on - strandat 3553.705 kb on - strandat 3553.730 kb on + strandat 3553.774 kb on + strandat 3554.005 kb on + strand, within MPMX20_03375at 3554.018 kb on + strand, within MPMX20_03375at 3554.018 kb on + strand, within MPMX20_03375at 3554.026 kb on - strand, within MPMX20_03375at 3554.026 kb on - strand, within MPMX20_03375at 3554.026 kb on - strand, within MPMX20_03375at 3554.088 kb on + strand, within MPMX20_03375at 3554.115 kb on - strand, within MPMX20_03375at 3554.115 kb on - strand, within MPMX20_03375at 3554.115 kb on - strand, within MPMX20_03375at 3554.161 kb on - strand, within MPMX20_03375at 3554.164 kb on - strand, within MPMX20_03375at 3554.202 kb on + strand, within MPMX20_03375at 3554.207 kb on + strand, within MPMX20_03375at 3554.215 kb on - strand, within MPMX20_03375at 3554.217 kb on + strand, within MPMX20_03375at 3554.217 kb on + strand, within MPMX20_03375at 3554.225 kb on - strand, within MPMX20_03375at 3554.225 kb on - strand, within MPMX20_03375at 3554.235 kb on - strand, within MPMX20_03375at 3554.270 kb on + strand, within MPMX20_03375at 3554.270 kb on + strand, within MPMX20_03375at 3554.278 kb on - strand, within MPMX20_03375at 3554.329 kb on + strand, within MPMX20_03375at 3554.337 kb on + strand, within MPMX20_03375at 3554.345 kb on - strand, within MPMX20_03375at 3554.393 kb on + strand, within MPMX20_03375at 3554.500 kb on + strand, within MPMX20_03375at 3554.536 kb on + strand, within MPMX20_03375at 3554.544 kb on - strand, within MPMX20_03375at 3554.544 kb on - strand, within MPMX20_03375at 3554.572 kb on + strand, within MPMX20_03375at 3554.611 kb on + strand, within MPMX20_03375at 3554.646 kb on - strand, within MPMX20_03375at 3554.832 kb on + strand, within MPMX20_03375at 3554.849 kb on + strand, within MPMX20_03375at 3554.904 kb on - strand, within MPMX20_03375at 3554.969 kb on - strand, within MPMX20_03375at 3554.974 kb on - strand, within MPMX20_03375at 3555.011 kb on + strand, within MPMX20_03375at 3555.019 kb on - strand, within MPMX20_03375at 3555.024 kb on + strand, within MPMX20_03375at 3555.097 kb on + strandat 3555.135 kb on - strandat 3555.151 kb on - strandat 3555.166 kb on + strandat 3555.166 kb on + strandat 3555.166 kb on + strandat 3555.166 kb on + strandat 3555.174 kb on - strandat 3555.174 kb on - strandat 3555.174 kb on - strandat 3555.174 kb on - strandat 3555.211 kb on + strandat 3555.218 kb on - strandat 3555.233 kb on + strandat 3555.233 kb on + strandat 3555.520 kb on - strandat 3555.520 kb on - strandat 3555.556 kb on - strandat 3555.589 kb on + strand, within MPMX20_03376at 3555.589 kb on + strand, within MPMX20_03376at 3555.858 kb on - strand, within MPMX20_03376at 3555.898 kb on - strand, within MPMX20_03376at 3555.946 kb on + strand, within MPMX20_03376at 3555.967 kb on - strand, within MPMX20_03376at 3555.990 kb on - strand, within MPMX20_03376at 3556.010 kb on + strand, within MPMX20_03376at 3556.010 kb on + strand, within MPMX20_03376at 3556.018 kb on - strand, within MPMX20_03376at 3556.069 kb on + strand, within MPMX20_03376at 3556.106 kb on + strand, within MPMX20_03376at 3556.168 kb on - strand, within MPMX20_03376

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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3,552,877 - MPMX20_03374 0.57 +0.6
3,552,886 - MPMX20_03374 0.58 -2.0
3,552,886 - MPMX20_03374 0.58 -3.2
3,553,002 - MPMX20_03374 0.64 -0.5
3,553,048 + MPMX20_03374 0.66 +1.2
3,553,070 + MPMX20_03374 0.67 -1.1
3,553,099 - MPMX20_03374 0.69 -2.3
3,553,100 + MPMX20_03374 0.69 -0.9
3,553,101 + MPMX20_03374 0.69 -2.4
3,553,113 + MPMX20_03374 0.69 -0.7
3,553,220 + MPMX20_03374 0.75 +0.2
3,553,291 + MPMX20_03374 0.79 -0.5
3,553,338 + MPMX20_03374 0.81 +1.4
3,553,357 - MPMX20_03374 0.82 -0.9
3,553,359 - MPMX20_03374 0.82 -1.3
3,553,432 + MPMX20_03374 0.86 +0.9
3,553,467 - MPMX20_03374 0.88 +0.4
3,553,487 + MPMX20_03374 0.89 -0.1
3,553,523 - +0.6
3,553,523 - +0.9
3,553,523 - +2.6
3,553,543 - -0.9
3,553,646 - -2.6
3,553,676 - -1.5
3,553,705 - -0.8
3,553,705 - +1.3
3,553,730 + -1.0
3,553,774 + -1.1
3,554,005 + MPMX20_03375 0.19 -1.0
3,554,018 + MPMX20_03375 0.20 -2.5
3,554,018 + MPMX20_03375 0.20 -1.0
3,554,026 - MPMX20_03375 0.21 -0.3
3,554,026 - MPMX20_03375 0.21 -0.4
3,554,026 - MPMX20_03375 0.21 +0.4
3,554,088 + MPMX20_03375 0.25 -0.8
3,554,115 - MPMX20_03375 0.27 +0.2
3,554,115 - MPMX20_03375 0.27 +2.0
3,554,115 - MPMX20_03375 0.27 -2.9
3,554,161 - MPMX20_03375 0.30 -0.6
3,554,164 - MPMX20_03375 0.30 -1.5
3,554,202 + MPMX20_03375 0.33 -1.1
3,554,207 + MPMX20_03375 0.33 -2.1
3,554,215 - MPMX20_03375 0.33 +0.3
3,554,217 + MPMX20_03375 0.34 -0.7
3,554,217 + MPMX20_03375 0.34 -0.9
3,554,225 - MPMX20_03375 0.34 -2.7
3,554,225 - MPMX20_03375 0.34 -0.0
3,554,235 - MPMX20_03375 0.35 -0.1
3,554,270 + MPMX20_03375 0.37 +2.1
3,554,270 + MPMX20_03375 0.37 +0.2
3,554,278 - MPMX20_03375 0.38 -0.7
3,554,329 + MPMX20_03375 0.41 -0.7
3,554,337 + MPMX20_03375 0.42 -0.5
3,554,345 - MPMX20_03375 0.42 -0.9
3,554,393 + MPMX20_03375 0.45 +1.5
3,554,500 + MPMX20_03375 0.52 -2.2
3,554,536 + MPMX20_03375 0.55 -2.7
3,554,544 - MPMX20_03375 0.55 -1.0
3,554,544 - MPMX20_03375 0.55 -1.8
3,554,572 + MPMX20_03375 0.57 -1.1
3,554,611 + MPMX20_03375 0.60 -1.0
3,554,646 - MPMX20_03375 0.62 +0.4
3,554,832 + MPMX20_03375 0.74 -0.4
3,554,849 + MPMX20_03375 0.75 +1.6
3,554,904 - MPMX20_03375 0.79 -1.7
3,554,969 - MPMX20_03375 0.83 -0.4
3,554,974 - MPMX20_03375 0.84 +0.6
3,555,011 + MPMX20_03375 0.86 -2.4
3,555,019 - MPMX20_03375 0.87 -1.1
3,555,024 + MPMX20_03375 0.87 +2.0
3,555,097 + -1.8
3,555,135 - +2.6
3,555,151 - -0.1
3,555,166 + +0.9
3,555,166 + -1.5
3,555,166 + +0.1
3,555,166 + -0.8
3,555,174 - +1.2
3,555,174 - +2.6
3,555,174 - +0.6
3,555,174 - +1.0
3,555,211 + -1.2
3,555,218 - +0.2
3,555,233 + +1.0
3,555,233 + -1.3
3,555,520 - -0.5
3,555,520 - -2.6
3,555,556 - +0.8
3,555,589 + MPMX20_03376 0.11 -0.3
3,555,589 + MPMX20_03376 0.11 +0.7
3,555,858 - MPMX20_03376 0.44 +2.5
3,555,898 - MPMX20_03376 0.48 -1.2
3,555,946 + MPMX20_03376 0.54 -1.4
3,555,967 - MPMX20_03376 0.57 -0.2
3,555,990 - MPMX20_03376 0.59 -1.6
3,556,010 + MPMX20_03376 0.62 -0.6
3,556,010 + MPMX20_03376 0.62 -1.5
3,556,018 - MPMX20_03376 0.63 -0.8
3,556,069 + MPMX20_03376 0.69 -2.5
3,556,106 + MPMX20_03376 0.73 -3.2
3,556,168 - MPMX20_03376 0.81 -1.5

Or see this region's nucleotide sequence