Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03370 and MPMX20_03371 are separated by 11 nucleotides MPMX20_03371 and MPMX20_03372 are separated by 54 nucleotides
MPMX20_03370: MPMX20_03370 - Ribose import permease protein RbsC, at 3,546,895 to 3,547,923
_03370
MPMX20_03371: MPMX20_03371 - Ribose import ATP-binding protein RbsA, at 3,547,935 to 3,549,482
_03371
MPMX20_03372: MPMX20_03372 - Ribose import binding protein RbsB, at 3,549,537 to 3,550,466
_03372
Position (kb)
3547
3548
3549
3550 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 3546.984 kb on - strand at 3546.991 kb on - strand at 3547.007 kb on - strand, within MPMX20_03370 at 3547.033 kb on - strand, within MPMX20_03370 at 3547.057 kb on - strand, within MPMX20_03370 at 3547.067 kb on - strand, within MPMX20_03370 at 3547.069 kb on - strand, within MPMX20_03370 at 3547.103 kb on - strand, within MPMX20_03370 at 3547.116 kb on + strand, within MPMX20_03370 at 3547.116 kb on + strand, within MPMX20_03370 at 3547.116 kb on + strand, within MPMX20_03370 at 3547.124 kb on - strand, within MPMX20_03370 at 3547.124 kb on - strand, within MPMX20_03370 at 3547.124 kb on - strand, within MPMX20_03370 at 3547.140 kb on + strand, within MPMX20_03370 at 3547.150 kb on + strand, within MPMX20_03370 at 3547.150 kb on + strand, within MPMX20_03370 at 3547.158 kb on - strand, within MPMX20_03370 at 3547.158 kb on - strand, within MPMX20_03370 at 3547.158 kb on - strand, within MPMX20_03370 at 3547.206 kb on + strand, within MPMX20_03370 at 3547.211 kb on + strand, within MPMX20_03370 at 3547.256 kb on + strand, within MPMX20_03370 at 3547.264 kb on - strand, within MPMX20_03370 at 3547.290 kb on - strand, within MPMX20_03370 at 3547.383 kb on + strand, within MPMX20_03370 at 3547.443 kb on + strand, within MPMX20_03370 at 3547.512 kb on + strand, within MPMX20_03370 at 3547.520 kb on - strand, within MPMX20_03370 at 3547.543 kb on + strand, within MPMX20_03370 at 3547.610 kb on + strand, within MPMX20_03370 at 3547.610 kb on + strand, within MPMX20_03370 at 3547.705 kb on + strand, within MPMX20_03370 at 3547.759 kb on + strand, within MPMX20_03370 at 3548.086 kb on - strand at 3548.140 kb on + strand, within MPMX20_03371 at 3548.188 kb on + strand, within MPMX20_03371 at 3548.202 kb on + strand, within MPMX20_03371 at 3548.248 kb on + strand, within MPMX20_03371 at 3548.272 kb on - strand, within MPMX20_03371 at 3548.338 kb on - strand, within MPMX20_03371 at 3548.350 kb on - strand, within MPMX20_03371 at 3548.409 kb on + strand, within MPMX20_03371 at 3548.417 kb on - strand, within MPMX20_03371 at 3548.417 kb on - strand, within MPMX20_03371 at 3548.417 kb on - strand, within MPMX20_03371 at 3548.460 kb on - strand, within MPMX20_03371 at 3548.462 kb on + strand, within MPMX20_03371 at 3548.462 kb on + strand, within MPMX20_03371 at 3548.470 kb on - strand, within MPMX20_03371 at 3548.474 kb on + strand, within MPMX20_03371 at 3548.510 kb on + strand, within MPMX20_03371 at 3548.510 kb on + strand, within MPMX20_03371 at 3548.518 kb on - strand, within MPMX20_03371 at 3548.518 kb on - strand, within MPMX20_03371 at 3548.571 kb on + strand, within MPMX20_03371 at 3548.575 kb on + strand, within MPMX20_03371 at 3548.585 kb on + strand, within MPMX20_03371 at 3548.595 kb on + strand, within MPMX20_03371 at 3548.595 kb on + strand, within MPMX20_03371 at 3548.603 kb on + strand, within MPMX20_03371 at 3548.603 kb on - strand, within MPMX20_03371 at 3548.603 kb on - strand, within MPMX20_03371 at 3548.618 kb on + strand, within MPMX20_03371 at 3548.626 kb on - strand, within MPMX20_03371 at 3548.639 kb on + strand, within MPMX20_03371 at 3548.639 kb on + strand, within MPMX20_03371 at 3548.639 kb on + strand, within MPMX20_03371 at 3548.639 kb on + strand, within MPMX20_03371 at 3548.647 kb on - strand, within MPMX20_03371 at 3548.647 kb on - strand, within MPMX20_03371 at 3548.647 kb on - strand, within MPMX20_03371 at 3548.647 kb on - strand, within MPMX20_03371 at 3548.647 kb on - strand, within MPMX20_03371 at 3548.647 kb on - strand, within MPMX20_03371 at 3548.647 kb on - strand, within MPMX20_03371 at 3548.647 kb on - strand, within MPMX20_03371 at 3548.948 kb on + strand, within MPMX20_03371 at 3548.948 kb on - strand, within MPMX20_03371 at 3548.974 kb on + strand, within MPMX20_03371 at 3548.993 kb on + strand, within MPMX20_03371 at 3549.030 kb on - strand, within MPMX20_03371 at 3549.064 kb on + strand, within MPMX20_03371 at 3549.065 kb on - strand, within MPMX20_03371 at 3549.087 kb on - strand, within MPMX20_03371 at 3549.105 kb on + strand, within MPMX20_03371 at 3549.159 kb on - strand, within MPMX20_03371 at 3549.161 kb on + strand, within MPMX20_03371 at 3549.161 kb on + strand, within MPMX20_03371 at 3549.169 kb on - strand, within MPMX20_03371 at 3549.169 kb on - strand, within MPMX20_03371 at 3549.174 kb on - strand, within MPMX20_03371 at 3549.334 kb on + strand at 3549.334 kb on + strand at 3549.342 kb on - strand at 3549.379 kb on + strand at 3549.407 kb on + strand at 3549.407 kb on + strand at 3549.407 kb on + strand at 3549.407 kb on + strand at 3549.425 kb on - strand at 3549.425 kb on - strand at 3549.471 kb on + strand at 3549.471 kb on + strand at 3549.479 kb on - strand at 3549.479 kb on - strand at 3549.479 kb on - strand at 3549.480 kb on - strand at 3549.487 kb on - strand at 3549.495 kb on + strand at 3549.495 kb on + strand at 3549.503 kb on - strand at 3549.507 kb on + strand at 3549.508 kb on - strand at 3549.598 kb on + strand at 3549.644 kb on - strand, within MPMX20_03372 at 3549.784 kb on + strand, within MPMX20_03372 at 3549.839 kb on + strand, within MPMX20_03372 at 3549.840 kb on + strand, within MPMX20_03372 at 3549.847 kb on - strand, within MPMX20_03372 at 3549.896 kb on + strand, within MPMX20_03372 at 3549.934 kb on + strand, within MPMX20_03372 at 3549.956 kb on + strand, within MPMX20_03372 at 3549.956 kb on + strand, within MPMX20_03372 at 3549.984 kb on - strand, within MPMX20_03372 at 3550.084 kb on + strand, within MPMX20_03372 at 3550.139 kb on + strand, within MPMX20_03372 at 3550.147 kb on - strand, within MPMX20_03372 at 3550.211 kb on - strand, within MPMX20_03372 at 3550.235 kb on - strand, within MPMX20_03372 at 3550.284 kb on + strand, within MPMX20_03372 at 3550.284 kb on + strand, within MPMX20_03372 at 3550.287 kb on - strand, within MPMX20_03372 at 3550.307 kb on + strand, within MPMX20_03372 at 3550.307 kb on + strand, within MPMX20_03372 at 3550.376 kb on + strand at 3550.481 kb on + strand at 3550.481 kb on + strand at 3550.481 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 3,546,984 - +1.2 3,546,991 - -1.8 3,547,007 - MPMX20_03370 0.11 -0.8 3,547,033 - MPMX20_03370 0.13 +1.2 3,547,057 - MPMX20_03370 0.16 -1.0 3,547,067 - MPMX20_03370 0.17 -0.2 3,547,069 - MPMX20_03370 0.17 -1.0 3,547,103 - MPMX20_03370 0.20 +0.9 3,547,116 + MPMX20_03370 0.21 -1.4 3,547,116 + MPMX20_03370 0.21 -0.6 3,547,116 + MPMX20_03370 0.21 -1.2 3,547,124 - MPMX20_03370 0.22 +0.3 3,547,124 - MPMX20_03370 0.22 +2.0 3,547,124 - MPMX20_03370 0.22 +1.0 3,547,140 + MPMX20_03370 0.24 -0.6 3,547,150 + MPMX20_03370 0.25 +1.6 3,547,150 + MPMX20_03370 0.25 -1.1 3,547,158 - MPMX20_03370 0.26 -2.4 3,547,158 - MPMX20_03370 0.26 -1.2 3,547,158 - MPMX20_03370 0.26 -2.3 3,547,206 + MPMX20_03370 0.30 -0.6 3,547,211 + MPMX20_03370 0.31 -0.8 3,547,256 + MPMX20_03370 0.35 +1.0 3,547,264 - MPMX20_03370 0.36 +0.1 3,547,290 - MPMX20_03370 0.38 +0.3 3,547,383 + MPMX20_03370 0.47 -3.0 3,547,443 + MPMX20_03370 0.53 -2.7 3,547,512 + MPMX20_03370 0.60 -0.2 3,547,520 - MPMX20_03370 0.61 +0.6 3,547,543 + MPMX20_03370 0.63 -1.7 3,547,610 + MPMX20_03370 0.69 -0.2 3,547,610 + MPMX20_03370 0.69 -1.1 3,547,705 + MPMX20_03370 0.79 -0.3 3,547,759 + MPMX20_03370 0.84 -0.2 3,548,086 - -2.7 3,548,140 + MPMX20_03371 0.13 +0.7 3,548,188 + MPMX20_03371 0.16 +2.5 3,548,202 + MPMX20_03371 0.17 +0.4 3,548,248 + MPMX20_03371 0.20 +1.4 3,548,272 - MPMX20_03371 0.22 -0.8 3,548,338 - MPMX20_03371 0.26 +0.2 3,548,350 - MPMX20_03371 0.27 -0.4 3,548,409 + MPMX20_03371 0.31 -0.6 3,548,417 - MPMX20_03371 0.31 +0.1 3,548,417 - MPMX20_03371 0.31 +2.6 3,548,417 - MPMX20_03371 0.31 -1.4 3,548,460 - MPMX20_03371 0.34 -0.7 3,548,462 + MPMX20_03371 0.34 -2.3 3,548,462 + MPMX20_03371 0.34 -0.5 3,548,470 - MPMX20_03371 0.35 +1.8 3,548,474 + MPMX20_03371 0.35 -2.4 3,548,510 + MPMX20_03371 0.37 -0.4 3,548,510 + MPMX20_03371 0.37 -2.6 3,548,518 - MPMX20_03371 0.38 +2.6 3,548,518 - MPMX20_03371 0.38 -0.8 3,548,571 + MPMX20_03371 0.41 -0.4 3,548,575 + MPMX20_03371 0.41 +0.9 3,548,585 + MPMX20_03371 0.42 -1.3 3,548,595 + MPMX20_03371 0.43 -0.0 3,548,595 + MPMX20_03371 0.43 +0.2 3,548,603 + MPMX20_03371 0.43 +1.6 3,548,603 - MPMX20_03371 0.43 -0.4 3,548,603 - MPMX20_03371 0.43 -2.1 3,548,618 + MPMX20_03371 0.44 +0.3 3,548,626 - MPMX20_03371 0.45 +0.2 3,548,639 + MPMX20_03371 0.45 +1.1 3,548,639 + MPMX20_03371 0.45 -0.1 3,548,639 + MPMX20_03371 0.45 -0.6 3,548,639 + MPMX20_03371 0.45 -0.8 3,548,647 - MPMX20_03371 0.46 +0.2 3,548,647 - MPMX20_03371 0.46 -1.8 3,548,647 - MPMX20_03371 0.46 -0.4 3,548,647 - MPMX20_03371 0.46 -2.4 3,548,647 - MPMX20_03371 0.46 +0.6 3,548,647 - MPMX20_03371 0.46 -2.7 3,548,647 - MPMX20_03371 0.46 -2.6 3,548,647 - MPMX20_03371 0.46 -0.8 3,548,948 + MPMX20_03371 0.65 -2.1 3,548,948 - MPMX20_03371 0.65 +0.1 3,548,974 + MPMX20_03371 0.67 -1.0 3,548,993 + MPMX20_03371 0.68 -0.8 3,549,030 - MPMX20_03371 0.71 +0.3 3,549,064 + MPMX20_03371 0.73 +6.8 3,549,065 - MPMX20_03371 0.73 -1.6 3,549,087 - MPMX20_03371 0.74 +2.1 3,549,105 + MPMX20_03371 0.76 +1.1 3,549,159 - MPMX20_03371 0.79 -0.6 3,549,161 + MPMX20_03371 0.79 +0.3 3,549,161 + MPMX20_03371 0.79 -0.4 3,549,169 - MPMX20_03371 0.80 +0.3 3,549,169 - MPMX20_03371 0.80 +0.8 3,549,174 - MPMX20_03371 0.80 +0.2 3,549,334 + +0.6 3,549,334 + -1.3 3,549,342 - +0.7 3,549,379 + +2.6 3,549,407 + +0.2 3,549,407 + -0.2 3,549,407 + -0.1 3,549,407 + -0.4 3,549,425 - -0.0 3,549,425 - -1.7 3,549,471 + +1.2 3,549,471 + +1.1 3,549,479 - +0.6 3,549,479 - +0.5 3,549,479 - +1.7 3,549,480 - -0.9 3,549,487 - -0.2 3,549,495 + -2.2 3,549,495 + +0.6 3,549,503 - +2.2 3,549,507 + +2.1 3,549,508 - -0.5 3,549,598 + +0.9 3,549,644 - MPMX20_03372 0.12 -2.8 3,549,784 + MPMX20_03372 0.27 -1.6 3,549,839 + MPMX20_03372 0.32 +0.4 3,549,840 + MPMX20_03372 0.33 +0.6 3,549,847 - MPMX20_03372 0.33 -1.1 3,549,896 + MPMX20_03372 0.39 +0.1 3,549,934 + MPMX20_03372 0.43 +0.4 3,549,956 + MPMX20_03372 0.45 -3.1 3,549,956 + MPMX20_03372 0.45 -0.8 3,549,984 - MPMX20_03372 0.48 -1.1 3,550,084 + MPMX20_03372 0.59 +1.0 3,550,139 + MPMX20_03372 0.65 -2.2 3,550,147 - MPMX20_03372 0.66 +0.2 3,550,211 - MPMX20_03372 0.72 -2.0 3,550,235 - MPMX20_03372 0.75 -1.5 3,550,284 + MPMX20_03372 0.80 +0.8 3,550,284 + MPMX20_03372 0.80 +1.0 3,550,287 - MPMX20_03372 0.81 -0.2 3,550,307 + MPMX20_03372 0.83 -1.7 3,550,307 + MPMX20_03372 0.83 -0.0 3,550,376 + +0.2 3,550,481 + -1.0 3,550,481 + -1.7 3,550,481 + +0.4
Or see this region's nucleotide sequence