Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03252

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03251 and MPMX20_03252 are separated by 154 nucleotidesMPMX20_03252 and MPMX20_03253 are separated by 28 nucleotidesMPMX20_03253 and MPMX20_03254 overlap by 1 nucleotides MPMX20_03251: MPMX20_03251 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, at 3,421,030 to 3,421,935 _03251 MPMX20_03252: MPMX20_03252 - Protein DedA, at 3,422,090 to 3,422,749 _03252 MPMX20_03253: MPMX20_03253 - tRNA pseudouridine synthase A, at 3,422,778 to 3,423,590 _03253 MPMX20_03254: MPMX20_03254 - USG-1 protein, at 3,423,590 to 3,424,603 _03254 Position (kb) 3422 3423Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3422.140 kb on + strandat 3422.149 kb on + strandat 3422.247 kb on + strand, within MPMX20_03252at 3422.247 kb on + strand, within MPMX20_03252at 3422.247 kb on + strand, within MPMX20_03252at 3422.255 kb on - strand, within MPMX20_03252at 3422.255 kb on - strand, within MPMX20_03252at 3422.255 kb on - strand, within MPMX20_03252at 3422.255 kb on - strand, within MPMX20_03252at 3422.255 kb on - strand, within MPMX20_03252at 3422.460 kb on + strand, within MPMX20_03252at 3422.468 kb on - strand, within MPMX20_03252at 3422.483 kb on + strand, within MPMX20_03252at 3422.648 kb on + strand, within MPMX20_03252at 3422.664 kb on + strand, within MPMX20_03252at 3422.673 kb on - strand, within MPMX20_03252at 3422.689 kb on + strandat 3422.706 kb on + strandat 3422.716 kb on + strandat 3422.771 kb on + strandat 3422.779 kb on - strandat 3422.802 kb on + strandat 3422.827 kb on - strandat 3422.895 kb on + strand, within MPMX20_03253at 3422.895 kb on + strand, within MPMX20_03253at 3422.898 kb on - strand, within MPMX20_03253at 3422.928 kb on - strand, within MPMX20_03253at 3422.936 kb on + strand, within MPMX20_03253at 3422.973 kb on + strand, within MPMX20_03253at 3422.989 kb on - strand, within MPMX20_03253at 3422.993 kb on - strand, within MPMX20_03253at 3423.023 kb on + strand, within MPMX20_03253at 3423.051 kb on - strand, within MPMX20_03253at 3423.073 kb on + strand, within MPMX20_03253at 3423.081 kb on - strand, within MPMX20_03253at 3423.084 kb on + strand, within MPMX20_03253at 3423.092 kb on - strand, within MPMX20_03253at 3423.124 kb on + strand, within MPMX20_03253at 3423.134 kb on + strand, within MPMX20_03253at 3423.157 kb on + strand, within MPMX20_03253at 3423.192 kb on + strand, within MPMX20_03253at 3423.200 kb on - strand, within MPMX20_03253at 3423.200 kb on - strand, within MPMX20_03253at 3423.200 kb on - strand, within MPMX20_03253at 3423.230 kb on - strand, within MPMX20_03253at 3423.286 kb on + strand, within MPMX20_03253at 3423.292 kb on - strand, within MPMX20_03253at 3423.427 kb on - strand, within MPMX20_03253at 3423.452 kb on + strand, within MPMX20_03253at 3423.517 kb on + strandat 3423.588 kb on + strandat 3423.588 kb on + strandat 3423.588 kb on + strandat 3423.596 kb on - strandat 3423.715 kb on + strand, within MPMX20_03254

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
remove
3,422,140 + -2.3
3,422,149 + -0.5
3,422,247 + MPMX20_03252 0.24 +0.4
3,422,247 + MPMX20_03252 0.24 -2.6
3,422,247 + MPMX20_03252 0.24 -2.3
3,422,255 - MPMX20_03252 0.25 -2.5
3,422,255 - MPMX20_03252 0.25 +0.0
3,422,255 - MPMX20_03252 0.25 +3.1
3,422,255 - MPMX20_03252 0.25 -1.8
3,422,255 - MPMX20_03252 0.25 -0.5
3,422,460 + MPMX20_03252 0.56 -2.8
3,422,468 - MPMX20_03252 0.57 +0.4
3,422,483 + MPMX20_03252 0.60 -2.1
3,422,648 + MPMX20_03252 0.85 +1.0
3,422,664 + MPMX20_03252 0.87 -2.0
3,422,673 - MPMX20_03252 0.88 -0.2
3,422,689 + +1.1
3,422,706 + -0.8
3,422,716 + -0.2
3,422,771 + -1.5
3,422,779 - -0.2
3,422,802 + -1.1
3,422,827 - +0.9
3,422,895 + MPMX20_03253 0.14 -2.0
3,422,895 + MPMX20_03253 0.14 -0.2
3,422,898 - MPMX20_03253 0.15 +1.6
3,422,928 - MPMX20_03253 0.18 +0.0
3,422,936 + MPMX20_03253 0.19 +2.2
3,422,973 + MPMX20_03253 0.24 +1.4
3,422,989 - MPMX20_03253 0.26 -0.5
3,422,993 - MPMX20_03253 0.26 -0.5
3,423,023 + MPMX20_03253 0.30 -1.5
3,423,051 - MPMX20_03253 0.34 +2.6
3,423,073 + MPMX20_03253 0.36 -0.0
3,423,081 - MPMX20_03253 0.37 +0.3
3,423,084 + MPMX20_03253 0.38 +1.2
3,423,092 - MPMX20_03253 0.39 -1.6
3,423,124 + MPMX20_03253 0.43 +0.5
3,423,134 + MPMX20_03253 0.44 +0.1
3,423,157 + MPMX20_03253 0.47 -1.5
3,423,192 + MPMX20_03253 0.51 +0.8
3,423,200 - MPMX20_03253 0.52 +0.5
3,423,200 - MPMX20_03253 0.52 -0.5
3,423,200 - MPMX20_03253 0.52 -1.0
3,423,230 - MPMX20_03253 0.56 -2.5
3,423,286 + MPMX20_03253 0.62 +2.6
3,423,292 - MPMX20_03253 0.63 +2.0
3,423,427 - MPMX20_03253 0.80 +0.3
3,423,452 + MPMX20_03253 0.83 -1.2
3,423,517 + -1.8
3,423,588 + -0.8
3,423,588 + -1.0
3,423,588 + -0.7
3,423,596 - -1.6
3,423,715 + MPMX20_03254 0.12 +1.0

Or see this region's nucleotide sequence