Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03213 and MPMX20_03214 are separated by 53 nucleotides MPMX20_03214 and MPMX20_03215 overlap by 4 nucleotides MPMX20_03215 and MPMX20_03216 are separated by 2 nucleotides
MPMX20_03213: MPMX20_03213 - NADH-quinone oxidoreductase subunit G, at 3,382,394 to 3,385,120
_03213
MPMX20_03214: MPMX20_03214 - NADH-quinone oxidoreductase subunit F, at 3,385,174 to 3,386,511
_03214
MPMX20_03215: MPMX20_03215 - NADH-quinone oxidoreductase subunit E, at 3,386,508 to 3,387,008
_03215
MPMX20_03216: MPMX20_03216 - NADH-quinone oxidoreductase subunit C/D, at 3,387,011 to 3,388,813
_03216
Position (kb)
3385
3386
3387 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3384.245 kb on - strand, within MPMX20_03213 at 3384.347 kb on - strand, within MPMX20_03213 at 3384.403 kb on - strand, within MPMX20_03213 at 3384.408 kb on - strand, within MPMX20_03213 at 3384.587 kb on - strand, within MPMX20_03213 at 3384.768 kb on + strand, within MPMX20_03213 at 3384.847 kb on - strand, within MPMX20_03213 at 3384.913 kb on + strand at 3384.931 kb on - strand at 3384.996 kb on + strand at 3384.996 kb on + strand at 3384.999 kb on - strand at 3385.001 kb on + strand at 3385.077 kb on + strand at 3385.091 kb on - strand at 3385.138 kb on + strand at 3385.143 kb on + strand at 3385.301 kb on - strand at 3385.349 kb on - strand, within MPMX20_03214 at 3385.421 kb on + strand, within MPMX20_03214 at 3385.429 kb on - strand, within MPMX20_03214 at 3385.446 kb on + strand, within MPMX20_03214 at 3385.446 kb on + strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.454 kb on - strand, within MPMX20_03214 at 3385.593 kb on + strand, within MPMX20_03214 at 3385.848 kb on + strand, within MPMX20_03214 at 3385.857 kb on - strand, within MPMX20_03214 at 3385.895 kb on - strand, within MPMX20_03214 at 3385.923 kb on + strand, within MPMX20_03214 at 3385.946 kb on + strand, within MPMX20_03214 at 3385.954 kb on - strand, within MPMX20_03214 at 3385.973 kb on - strand, within MPMX20_03214 at 3385.973 kb on - strand, within MPMX20_03214 at 3385.988 kb on + strand, within MPMX20_03214 at 3385.988 kb on + strand, within MPMX20_03214 at 3385.996 kb on - strand, within MPMX20_03214 at 3386.005 kb on - strand, within MPMX20_03214 at 3386.104 kb on - strand, within MPMX20_03214 at 3386.131 kb on - strand, within MPMX20_03214 at 3386.211 kb on + strand, within MPMX20_03214 at 3386.219 kb on - strand, within MPMX20_03214 at 3386.240 kb on + strand, within MPMX20_03214 at 3386.240 kb on + strand, within MPMX20_03214 at 3386.240 kb on + strand, within MPMX20_03214 at 3386.248 kb on - strand, within MPMX20_03214 at 3386.248 kb on - strand, within MPMX20_03214 at 3386.352 kb on - strand, within MPMX20_03214 at 3386.390 kb on + strand at 3386.463 kb on + strand at 3386.463 kb on + strand at 3386.465 kb on + strand at 3386.473 kb on - strand at 3386.483 kb on - strand at 3386.533 kb on + strand at 3386.536 kb on - strand at 3386.536 kb on - strand at 3386.625 kb on - strand, within MPMX20_03215 at 3386.647 kb on - strand, within MPMX20_03215 at 3386.654 kb on + strand, within MPMX20_03215 at 3386.654 kb on + strand, within MPMX20_03215 at 3386.662 kb on - strand, within MPMX20_03215 at 3386.723 kb on - strand, within MPMX20_03215 at 3386.755 kb on - strand, within MPMX20_03215 at 3386.789 kb on + strand, within MPMX20_03215 at 3387.050 kb on - strand at 3387.119 kb on + strand at 3387.144 kb on - strand at 3387.172 kb on + strand at 3387.180 kb on - strand at 3387.283 kb on + strand, within MPMX20_03216 at 3387.291 kb on - strand, within MPMX20_03216 at 3387.330 kb on + strand, within MPMX20_03216 at 3387.365 kb on + strand, within MPMX20_03216 at 3387.365 kb on + strand, within MPMX20_03216 at 3387.367 kb on + strand, within MPMX20_03216 at 3387.367 kb on + strand, within MPMX20_03216 at 3387.367 kb on + strand, within MPMX20_03216 at 3387.375 kb on - strand, within MPMX20_03216 at 3387.375 kb on - strand, within MPMX20_03216 at 3387.375 kb on - strand, within MPMX20_03216 at 3387.375 kb on - strand, within MPMX20_03216 at 3387.480 kb on + strand, within MPMX20_03216
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 3,384,245 - MPMX20_03213 0.68 -2.4 3,384,347 - MPMX20_03213 0.72 -1.4 3,384,403 - MPMX20_03213 0.74 -1.1 3,384,408 - MPMX20_03213 0.74 -2.6 3,384,587 - MPMX20_03213 0.80 -0.9 3,384,768 + MPMX20_03213 0.87 -0.9 3,384,847 - MPMX20_03213 0.90 -0.7 3,384,913 + -0.7 3,384,931 - +0.3 3,384,996 + +1.6 3,384,996 + -2.2 3,384,999 - +0.6 3,385,001 + -2.0 3,385,077 + -2.0 3,385,091 - -0.2 3,385,138 + -2.0 3,385,143 + -2.1 3,385,301 - -3.3 3,385,349 - MPMX20_03214 0.13 -2.7 3,385,421 + MPMX20_03214 0.18 -0.6 3,385,429 - MPMX20_03214 0.19 -2.4 3,385,446 + MPMX20_03214 0.20 -1.4 3,385,446 + MPMX20_03214 0.20 +0.6 3,385,454 - MPMX20_03214 0.21 -2.0 3,385,454 - MPMX20_03214 0.21 +0.1 3,385,454 - MPMX20_03214 0.21 -0.7 3,385,454 - MPMX20_03214 0.21 -1.1 3,385,454 - MPMX20_03214 0.21 -1.0 3,385,593 + MPMX20_03214 0.31 +1.0 3,385,848 + MPMX20_03214 0.50 +0.3 3,385,857 - MPMX20_03214 0.51 -1.2 3,385,895 - MPMX20_03214 0.54 -0.6 3,385,923 + MPMX20_03214 0.56 -1.6 3,385,946 + MPMX20_03214 0.58 -2.4 3,385,954 - MPMX20_03214 0.58 +0.4 3,385,973 - MPMX20_03214 0.60 -1.6 3,385,973 - MPMX20_03214 0.60 +1.0 3,385,988 + MPMX20_03214 0.61 -2.1 3,385,988 + MPMX20_03214 0.61 -1.3 3,385,996 - MPMX20_03214 0.61 -1.6 3,386,005 - MPMX20_03214 0.62 -1.2 3,386,104 - MPMX20_03214 0.70 -1.1 3,386,131 - MPMX20_03214 0.72 -1.6 3,386,211 + MPMX20_03214 0.78 -2.8 3,386,219 - MPMX20_03214 0.78 -0.7 3,386,240 + MPMX20_03214 0.80 +1.0 3,386,240 + MPMX20_03214 0.80 -1.6 3,386,240 + MPMX20_03214 0.80 +0.6 3,386,248 - MPMX20_03214 0.80 -0.4 3,386,248 - MPMX20_03214 0.80 +0.0 3,386,352 - MPMX20_03214 0.88 -0.9 3,386,390 + -2.4 3,386,463 + -0.2 3,386,463 + -1.8 3,386,465 + -1.4 3,386,473 - -1.7 3,386,483 - +0.3 3,386,533 + -2.2 3,386,536 - -1.0 3,386,536 - -0.6 3,386,625 - MPMX20_03215 0.23 -0.7 3,386,647 - MPMX20_03215 0.28 -1.6 3,386,654 + MPMX20_03215 0.29 -1.7 3,386,654 + MPMX20_03215 0.29 -0.7 3,386,662 - MPMX20_03215 0.31 -1.0 3,386,723 - MPMX20_03215 0.43 -0.2 3,386,755 - MPMX20_03215 0.49 +1.0 3,386,789 + MPMX20_03215 0.56 +2.6 3,387,050 - -1.1 3,387,119 + -3.2 3,387,144 - -2.6 3,387,172 + +0.9 3,387,180 - -1.5 3,387,283 + MPMX20_03216 0.15 -1.0 3,387,291 - MPMX20_03216 0.16 -1.6 3,387,330 + MPMX20_03216 0.18 -0.7 3,387,365 + MPMX20_03216 0.20 -1.3 3,387,365 + MPMX20_03216 0.20 -1.2 3,387,367 + MPMX20_03216 0.20 -2.7 3,387,367 + MPMX20_03216 0.20 -0.4 3,387,367 + MPMX20_03216 0.20 -1.8 3,387,375 - MPMX20_03216 0.20 -0.2 3,387,375 - MPMX20_03216 0.20 -0.2 3,387,375 - MPMX20_03216 0.20 -1.6 3,387,375 - MPMX20_03216 0.20 -0.4 3,387,480 + MPMX20_03216 0.26 -1.9
Or see this region's nucleotide sequence