Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03214

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03213 and MPMX20_03214 are separated by 53 nucleotidesMPMX20_03214 and MPMX20_03215 overlap by 4 nucleotidesMPMX20_03215 and MPMX20_03216 are separated by 2 nucleotides MPMX20_03213: MPMX20_03213 - NADH-quinone oxidoreductase subunit G, at 3,382,394 to 3,385,120 _03213 MPMX20_03214: MPMX20_03214 - NADH-quinone oxidoreductase subunit F, at 3,385,174 to 3,386,511 _03214 MPMX20_03215: MPMX20_03215 - NADH-quinone oxidoreductase subunit E, at 3,386,508 to 3,387,008 _03215 MPMX20_03216: MPMX20_03216 - NADH-quinone oxidoreductase subunit C/D, at 3,387,011 to 3,388,813 _03216 Position (kb) 3385 3386 3387Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3384.245 kb on - strand, within MPMX20_03213at 3384.347 kb on - strand, within MPMX20_03213at 3384.403 kb on - strand, within MPMX20_03213at 3384.408 kb on - strand, within MPMX20_03213at 3384.587 kb on - strand, within MPMX20_03213at 3384.768 kb on + strand, within MPMX20_03213at 3384.847 kb on - strand, within MPMX20_03213at 3384.913 kb on + strandat 3384.931 kb on - strandat 3384.996 kb on + strandat 3384.996 kb on + strandat 3384.999 kb on - strandat 3385.001 kb on + strandat 3385.077 kb on + strandat 3385.091 kb on - strandat 3385.138 kb on + strandat 3385.143 kb on + strandat 3385.301 kb on - strandat 3385.349 kb on - strand, within MPMX20_03214at 3385.421 kb on + strand, within MPMX20_03214at 3385.429 kb on - strand, within MPMX20_03214at 3385.446 kb on + strand, within MPMX20_03214at 3385.446 kb on + strand, within MPMX20_03214at 3385.454 kb on - strand, within MPMX20_03214at 3385.454 kb on - strand, within MPMX20_03214at 3385.454 kb on - strand, within MPMX20_03214at 3385.454 kb on - strand, within MPMX20_03214at 3385.454 kb on - strand, within MPMX20_03214at 3385.593 kb on + strand, within MPMX20_03214at 3385.848 kb on + strand, within MPMX20_03214at 3385.857 kb on - strand, within MPMX20_03214at 3385.895 kb on - strand, within MPMX20_03214at 3385.923 kb on + strand, within MPMX20_03214at 3385.946 kb on + strand, within MPMX20_03214at 3385.954 kb on - strand, within MPMX20_03214at 3385.973 kb on - strand, within MPMX20_03214at 3385.973 kb on - strand, within MPMX20_03214at 3385.988 kb on + strand, within MPMX20_03214at 3385.988 kb on + strand, within MPMX20_03214at 3385.996 kb on - strand, within MPMX20_03214at 3386.005 kb on - strand, within MPMX20_03214at 3386.104 kb on - strand, within MPMX20_03214at 3386.131 kb on - strand, within MPMX20_03214at 3386.211 kb on + strand, within MPMX20_03214at 3386.219 kb on - strand, within MPMX20_03214at 3386.240 kb on + strand, within MPMX20_03214at 3386.240 kb on + strand, within MPMX20_03214at 3386.240 kb on + strand, within MPMX20_03214at 3386.248 kb on - strand, within MPMX20_03214at 3386.248 kb on - strand, within MPMX20_03214at 3386.352 kb on - strand, within MPMX20_03214at 3386.390 kb on + strandat 3386.463 kb on + strandat 3386.463 kb on + strandat 3386.465 kb on + strandat 3386.473 kb on - strandat 3386.483 kb on - strandat 3386.533 kb on + strandat 3386.536 kb on - strandat 3386.536 kb on - strandat 3386.625 kb on - strand, within MPMX20_03215at 3386.647 kb on - strand, within MPMX20_03215at 3386.654 kb on + strand, within MPMX20_03215at 3386.654 kb on + strand, within MPMX20_03215at 3386.662 kb on - strand, within MPMX20_03215at 3386.723 kb on - strand, within MPMX20_03215at 3386.755 kb on - strand, within MPMX20_03215at 3386.789 kb on + strand, within MPMX20_03215at 3387.050 kb on - strandat 3387.119 kb on + strandat 3387.144 kb on - strandat 3387.172 kb on + strandat 3387.180 kb on - strandat 3387.283 kb on + strand, within MPMX20_03216at 3387.291 kb on - strand, within MPMX20_03216at 3387.330 kb on + strand, within MPMX20_03216at 3387.365 kb on + strand, within MPMX20_03216at 3387.365 kb on + strand, within MPMX20_03216at 3387.367 kb on + strand, within MPMX20_03216at 3387.367 kb on + strand, within MPMX20_03216at 3387.367 kb on + strand, within MPMX20_03216at 3387.375 kb on - strand, within MPMX20_03216at 3387.375 kb on - strand, within MPMX20_03216at 3387.375 kb on - strand, within MPMX20_03216at 3387.375 kb on - strand, within MPMX20_03216at 3387.480 kb on + strand, within MPMX20_03216

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
remove
3,384,245 - MPMX20_03213 0.68 -2.4
3,384,347 - MPMX20_03213 0.72 -1.4
3,384,403 - MPMX20_03213 0.74 -1.1
3,384,408 - MPMX20_03213 0.74 -2.6
3,384,587 - MPMX20_03213 0.80 -0.9
3,384,768 + MPMX20_03213 0.87 -0.9
3,384,847 - MPMX20_03213 0.90 -0.7
3,384,913 + -0.7
3,384,931 - +0.3
3,384,996 + +1.6
3,384,996 + -2.2
3,384,999 - +0.6
3,385,001 + -2.0
3,385,077 + -2.0
3,385,091 - -0.2
3,385,138 + -2.0
3,385,143 + -2.1
3,385,301 - -3.3
3,385,349 - MPMX20_03214 0.13 -2.7
3,385,421 + MPMX20_03214 0.18 -0.6
3,385,429 - MPMX20_03214 0.19 -2.4
3,385,446 + MPMX20_03214 0.20 -1.4
3,385,446 + MPMX20_03214 0.20 +0.6
3,385,454 - MPMX20_03214 0.21 -2.0
3,385,454 - MPMX20_03214 0.21 +0.1
3,385,454 - MPMX20_03214 0.21 -0.7
3,385,454 - MPMX20_03214 0.21 -1.1
3,385,454 - MPMX20_03214 0.21 -1.0
3,385,593 + MPMX20_03214 0.31 +1.0
3,385,848 + MPMX20_03214 0.50 +0.3
3,385,857 - MPMX20_03214 0.51 -1.2
3,385,895 - MPMX20_03214 0.54 -0.6
3,385,923 + MPMX20_03214 0.56 -1.6
3,385,946 + MPMX20_03214 0.58 -2.4
3,385,954 - MPMX20_03214 0.58 +0.4
3,385,973 - MPMX20_03214 0.60 -1.6
3,385,973 - MPMX20_03214 0.60 +1.0
3,385,988 + MPMX20_03214 0.61 -2.1
3,385,988 + MPMX20_03214 0.61 -1.3
3,385,996 - MPMX20_03214 0.61 -1.6
3,386,005 - MPMX20_03214 0.62 -1.2
3,386,104 - MPMX20_03214 0.70 -1.1
3,386,131 - MPMX20_03214 0.72 -1.6
3,386,211 + MPMX20_03214 0.78 -2.8
3,386,219 - MPMX20_03214 0.78 -0.7
3,386,240 + MPMX20_03214 0.80 +1.0
3,386,240 + MPMX20_03214 0.80 -1.6
3,386,240 + MPMX20_03214 0.80 +0.6
3,386,248 - MPMX20_03214 0.80 -0.4
3,386,248 - MPMX20_03214 0.80 +0.0
3,386,352 - MPMX20_03214 0.88 -0.9
3,386,390 + -2.4
3,386,463 + -0.2
3,386,463 + -1.8
3,386,465 + -1.4
3,386,473 - -1.7
3,386,483 - +0.3
3,386,533 + -2.2
3,386,536 - -1.0
3,386,536 - -0.6
3,386,625 - MPMX20_03215 0.23 -0.7
3,386,647 - MPMX20_03215 0.28 -1.6
3,386,654 + MPMX20_03215 0.29 -1.7
3,386,654 + MPMX20_03215 0.29 -0.7
3,386,662 - MPMX20_03215 0.31 -1.0
3,386,723 - MPMX20_03215 0.43 -0.2
3,386,755 - MPMX20_03215 0.49 +1.0
3,386,789 + MPMX20_03215 0.56 +2.6
3,387,050 - -1.1
3,387,119 + -3.2
3,387,144 - -2.6
3,387,172 + +0.9
3,387,180 - -1.5
3,387,283 + MPMX20_03216 0.15 -1.0
3,387,291 - MPMX20_03216 0.16 -1.6
3,387,330 + MPMX20_03216 0.18 -0.7
3,387,365 + MPMX20_03216 0.20 -1.3
3,387,365 + MPMX20_03216 0.20 -1.2
3,387,367 + MPMX20_03216 0.20 -2.7
3,387,367 + MPMX20_03216 0.20 -0.4
3,387,367 + MPMX20_03216 0.20 -1.8
3,387,375 - MPMX20_03216 0.20 -0.2
3,387,375 - MPMX20_03216 0.20 -0.2
3,387,375 - MPMX20_03216 0.20 -1.6
3,387,375 - MPMX20_03216 0.20 -0.4
3,387,480 + MPMX20_03216 0.26 -1.9

Or see this region's nucleotide sequence