Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03210 and MPMX20_03211 are separated by 10 nucleotides MPMX20_03211 and MPMX20_03212 are separated by 13 nucleotides MPMX20_03212 and MPMX20_03213 overlap by 4 nucleotides
MPMX20_03210: MPMX20_03210 - NADH-quinone oxidoreductase subunit J, at 3,380,299 to 3,380,853
_03210
MPMX20_03211: MPMX20_03211 - NADH-quinone oxidoreductase subunit I, at 3,380,864 to 3,381,406
_03211
MPMX20_03212: MPMX20_03212 - NADH-quinone oxidoreductase subunit H, at 3,381,420 to 3,382,397
_03212
MPMX20_03213: MPMX20_03213 - NADH-quinone oxidoreductase subunit G, at 3,382,394 to 3,385,120
_03213
Position (kb)
3381
3382
3383 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3380.423 kb on - strand, within MPMX20_03210 at 3380.447 kb on + strand, within MPMX20_03210 at 3380.465 kb on - strand, within MPMX20_03210 at 3380.480 kb on - strand, within MPMX20_03210 at 3380.573 kb on + strand, within MPMX20_03210 at 3380.573 kb on + strand, within MPMX20_03210 at 3380.581 kb on - strand, within MPMX20_03210 at 3380.581 kb on - strand, within MPMX20_03210 at 3380.594 kb on - strand, within MPMX20_03210 at 3380.594 kb on - strand, within MPMX20_03210 at 3380.726 kb on - strand, within MPMX20_03210 at 3380.726 kb on - strand, within MPMX20_03210 at 3380.784 kb on - strand, within MPMX20_03210 at 3380.788 kb on - strand, within MPMX20_03210 at 3380.814 kb on + strand at 3380.863 kb on - strand at 3380.915 kb on + strand at 3380.915 kb on + strand at 3380.916 kb on - strand at 3380.960 kb on + strand, within MPMX20_03211 at 3381.027 kb on + strand, within MPMX20_03211 at 3381.087 kb on + strand, within MPMX20_03211 at 3381.214 kb on + strand, within MPMX20_03211 at 3381.222 kb on - strand, within MPMX20_03211 at 3381.232 kb on + strand, within MPMX20_03211 at 3381.232 kb on + strand, within MPMX20_03211 at 3381.232 kb on + strand, within MPMX20_03211 at 3381.240 kb on - strand, within MPMX20_03211 at 3381.240 kb on - strand, within MPMX20_03211 at 3381.268 kb on + strand, within MPMX20_03211 at 3381.350 kb on + strand, within MPMX20_03211 at 3381.352 kb on + strand at 3381.410 kb on + strand at 3381.528 kb on + strand, within MPMX20_03212 at 3381.528 kb on + strand, within MPMX20_03212 at 3381.528 kb on + strand, within MPMX20_03212 at 3381.536 kb on - strand, within MPMX20_03212 at 3381.536 kb on - strand, within MPMX20_03212 at 3381.536 kb on - strand, within MPMX20_03212 at 3381.536 kb on - strand, within MPMX20_03212 at 3381.606 kb on + strand, within MPMX20_03212 at 3381.633 kb on - strand, within MPMX20_03212 at 3381.690 kb on - strand, within MPMX20_03212 at 3381.772 kb on + strand, within MPMX20_03212 at 3381.775 kb on - strand, within MPMX20_03212 at 3381.782 kb on + strand, within MPMX20_03212 at 3381.972 kb on - strand, within MPMX20_03212 at 3382.059 kb on + strand, within MPMX20_03212 at 3382.067 kb on - strand, within MPMX20_03212 at 3382.177 kb on + strand, within MPMX20_03212 at 3382.228 kb on - strand, within MPMX20_03212 at 3382.242 kb on - strand, within MPMX20_03212 at 3382.317 kb on + strand at 3382.455 kb on + strand at 3382.483 kb on - strand at 3382.560 kb on + strand at 3382.602 kb on + strand at 3382.641 kb on + strand at 3382.679 kb on - strand, within MPMX20_03213 at 3382.736 kb on - strand, within MPMX20_03213 at 3382.763 kb on + strand, within MPMX20_03213 at 3382.810 kb on - strand, within MPMX20_03213 at 3382.841 kb on + strand, within MPMX20_03213 at 3382.849 kb on - strand, within MPMX20_03213 at 3382.890 kb on - strand, within MPMX20_03213 at 3382.901 kb on - strand, within MPMX20_03213 at 3382.937 kb on - strand, within MPMX20_03213 at 3382.967 kb on - strand, within MPMX20_03213 at 3383.000 kb on - strand, within MPMX20_03213 at 3383.131 kb on + strand, within MPMX20_03213 at 3383.138 kb on + strand, within MPMX20_03213 at 3383.138 kb on + strand, within MPMX20_03213 at 3383.138 kb on + strand, within MPMX20_03213 at 3383.139 kb on - strand, within MPMX20_03213 at 3383.146 kb on - strand, within MPMX20_03213 at 3383.146 kb on - strand, within MPMX20_03213 at 3383.156 kb on - strand, within MPMX20_03213 at 3383.158 kb on - strand, within MPMX20_03213 at 3383.162 kb on + strand, within MPMX20_03213 at 3383.195 kb on + strand, within MPMX20_03213 at 3383.255 kb on + strand, within MPMX20_03213 at 3383.359 kb on + strand, within MPMX20_03213 at 3383.361 kb on + strand, within MPMX20_03213 at 3383.369 kb on - strand, within MPMX20_03213 at 3383.374 kb on - strand, within MPMX20_03213
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 3,380,423 - MPMX20_03210 0.22 -1.7 3,380,447 + MPMX20_03210 0.27 +1.6 3,380,465 - MPMX20_03210 0.30 +1.0 3,380,480 - MPMX20_03210 0.33 -2.2 3,380,573 + MPMX20_03210 0.49 -2.6 3,380,573 + MPMX20_03210 0.49 -1.3 3,380,581 - MPMX20_03210 0.51 -2.0 3,380,581 - MPMX20_03210 0.51 -1.2 3,380,594 - MPMX20_03210 0.53 -1.0 3,380,594 - MPMX20_03210 0.53 -1.7 3,380,726 - MPMX20_03210 0.77 -1.9 3,380,726 - MPMX20_03210 0.77 -0.4 3,380,784 - MPMX20_03210 0.87 -2.2 3,380,788 - MPMX20_03210 0.88 -0.6 3,380,814 + +0.0 3,380,863 - -3.0 3,380,915 + -0.2 3,380,915 + -2.0 3,380,916 - +0.6 3,380,960 + MPMX20_03211 0.18 -1.6 3,381,027 + MPMX20_03211 0.30 +0.3 3,381,087 + MPMX20_03211 0.41 -2.0 3,381,214 + MPMX20_03211 0.64 +0.3 3,381,222 - MPMX20_03211 0.66 +0.0 3,381,232 + MPMX20_03211 0.68 +0.3 3,381,232 + MPMX20_03211 0.68 -1.7 3,381,232 + MPMX20_03211 0.68 -2.0 3,381,240 - MPMX20_03211 0.69 -1.6 3,381,240 - MPMX20_03211 0.69 -1.7 3,381,268 + MPMX20_03211 0.74 -2.2 3,381,350 + MPMX20_03211 0.90 -0.4 3,381,352 + +0.6 3,381,410 + -2.3 3,381,528 + MPMX20_03212 0.11 +4.2 3,381,528 + MPMX20_03212 0.11 -0.2 3,381,528 + MPMX20_03212 0.11 -1.9 3,381,536 - MPMX20_03212 0.12 -1.4 3,381,536 - MPMX20_03212 0.12 -0.2 3,381,536 - MPMX20_03212 0.12 +0.6 3,381,536 - MPMX20_03212 0.12 +1.0 3,381,606 + MPMX20_03212 0.19 -0.4 3,381,633 - MPMX20_03212 0.22 -2.3 3,381,690 - MPMX20_03212 0.28 -1.4 3,381,772 + MPMX20_03212 0.36 -1.6 3,381,775 - MPMX20_03212 0.36 -2.3 3,381,782 + MPMX20_03212 0.37 -0.9 3,381,972 - MPMX20_03212 0.56 -0.7 3,382,059 + MPMX20_03212 0.65 -0.7 3,382,067 - MPMX20_03212 0.66 -1.1 3,382,177 + MPMX20_03212 0.77 -2.6 3,382,228 - MPMX20_03212 0.83 -2.0 3,382,242 - MPMX20_03212 0.84 +0.2 3,382,317 + +0.6 3,382,455 + -1.9 3,382,483 - -0.2 3,382,560 + -2.1 3,382,602 + -0.2 3,382,641 + -2.6 3,382,679 - MPMX20_03213 0.10 +0.3 3,382,736 - MPMX20_03213 0.13 -2.2 3,382,763 + MPMX20_03213 0.14 -0.4 3,382,810 - MPMX20_03213 0.15 -1.1 3,382,841 + MPMX20_03213 0.16 -1.8 3,382,849 - MPMX20_03213 0.17 -0.2 3,382,890 - MPMX20_03213 0.18 -0.2 3,382,901 - MPMX20_03213 0.19 -1.4 3,382,937 - MPMX20_03213 0.20 -1.3 3,382,967 - MPMX20_03213 0.21 +1.8 3,383,000 - MPMX20_03213 0.22 +1.0 3,383,131 + MPMX20_03213 0.27 -1.9 3,383,138 + MPMX20_03213 0.27 -1.4 3,383,138 + MPMX20_03213 0.27 -1.5 3,383,138 + MPMX20_03213 0.27 +0.0 3,383,139 - MPMX20_03213 0.27 -0.7 3,383,146 - MPMX20_03213 0.28 -1.4 3,383,146 - MPMX20_03213 0.28 -2.5 3,383,156 - MPMX20_03213 0.28 +1.0 3,383,158 - MPMX20_03213 0.28 -1.2 3,383,162 + MPMX20_03213 0.28 -0.7 3,383,195 + MPMX20_03213 0.29 -1.6 3,383,255 + MPMX20_03213 0.32 -1.6 3,383,359 + MPMX20_03213 0.35 -0.6 3,383,361 + MPMX20_03213 0.35 -0.9 3,383,369 - MPMX20_03213 0.36 +0.6 3,383,374 - MPMX20_03213 0.36 -2.3
Or see this region's nucleotide sequence