Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03207 and MPMX20_03208 are separated by 76 nucleotides MPMX20_03208 and MPMX20_03209 overlap by 4 nucleotides MPMX20_03209 and MPMX20_03210 overlap by 4 nucleotides MPMX20_03210 and MPMX20_03211 are separated by 10 nucleotides
MPMX20_03207: MPMX20_03207 - NADH-quinone oxidoreductase subunit M, at 3,376,556 to 3,378,085
_03207
MPMX20_03208: MPMX20_03208 - NADH-quinone oxidoreductase subunit L, at 3,378,162 to 3,380,003
_03208
MPMX20_03209: MPMX20_03209 - NADH-quinone oxidoreductase subunit K, at 3,380,000 to 3,380,302
_03209
MPMX20_03210: MPMX20_03210 - NADH-quinone oxidoreductase subunit J, at 3,380,299 to 3,380,853
_03210
MPMX20_03211: MPMX20_03211 - NADH-quinone oxidoreductase subunit I, at 3,380,864 to 3,381,406
_03211
Position (kb)
3378
3379
3380
3381 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3377.162 kb on - strand, within MPMX20_03207 at 3377.174 kb on + strand, within MPMX20_03207 at 3377.175 kb on + strand, within MPMX20_03207 at 3377.192 kb on - strand, within MPMX20_03207 at 3377.260 kb on + strand, within MPMX20_03207 at 3377.265 kb on + strand, within MPMX20_03207 at 3377.311 kb on + strand, within MPMX20_03207 at 3377.396 kb on + strand, within MPMX20_03207 at 3377.408 kb on + strand, within MPMX20_03207 at 3377.498 kb on - strand, within MPMX20_03207 at 3377.575 kb on - strand, within MPMX20_03207 at 3377.711 kb on + strand, within MPMX20_03207 at 3377.734 kb on + strand, within MPMX20_03207 at 3377.798 kb on - strand, within MPMX20_03207 at 3377.839 kb on - strand, within MPMX20_03207 at 3377.853 kb on - strand, within MPMX20_03207 at 3377.905 kb on - strand, within MPMX20_03207 at 3377.956 kb on + strand at 3377.964 kb on - strand at 3377.964 kb on - strand at 3378.117 kb on - strand at 3378.129 kb on - strand at 3378.172 kb on + strand at 3378.173 kb on - strand at 3378.258 kb on + strand at 3378.319 kb on + strand at 3378.339 kb on + strand at 3378.386 kb on - strand, within MPMX20_03208 at 3378.471 kb on + strand, within MPMX20_03208 at 3378.500 kb on - strand, within MPMX20_03208 at 3378.609 kb on + strand, within MPMX20_03208 at 3378.662 kb on - strand, within MPMX20_03208 at 3378.874 kb on + strand, within MPMX20_03208 at 3378.966 kb on + strand, within MPMX20_03208 at 3378.984 kb on - strand, within MPMX20_03208 at 3379.095 kb on - strand, within MPMX20_03208 at 3379.127 kb on - strand, within MPMX20_03208 at 3379.135 kb on - strand, within MPMX20_03208 at 3379.240 kb on + strand, within MPMX20_03208 at 3379.240 kb on + strand, within MPMX20_03208 at 3379.323 kb on - strand, within MPMX20_03208 at 3379.346 kb on + strand, within MPMX20_03208 at 3379.346 kb on + strand, within MPMX20_03208 at 3379.354 kb on - strand, within MPMX20_03208 at 3379.390 kb on + strand, within MPMX20_03208 at 3379.451 kb on + strand, within MPMX20_03208 at 3379.462 kb on + strand, within MPMX20_03208 at 3379.482 kb on + strand, within MPMX20_03208 at 3379.568 kb on + strand, within MPMX20_03208 at 3379.640 kb on + strand, within MPMX20_03208 at 3379.756 kb on - strand, within MPMX20_03208 at 3379.799 kb on + strand, within MPMX20_03208 at 3379.886 kb on + strand at 3379.894 kb on - strand at 3379.955 kb on + strand at 3379.991 kb on - strand at 3380.054 kb on + strand, within MPMX20_03209 at 3380.074 kb on + strand, within MPMX20_03209 at 3380.138 kb on - strand, within MPMX20_03209 at 3380.168 kb on + strand, within MPMX20_03209 at 3380.244 kb on + strand, within MPMX20_03209 at 3380.257 kb on - strand, within MPMX20_03209 at 3380.397 kb on - strand, within MPMX20_03210 at 3380.423 kb on - strand, within MPMX20_03210 at 3380.447 kb on + strand, within MPMX20_03210 at 3380.465 kb on - strand, within MPMX20_03210 at 3380.480 kb on - strand, within MPMX20_03210 at 3380.573 kb on + strand, within MPMX20_03210 at 3380.573 kb on + strand, within MPMX20_03210 at 3380.581 kb on - strand, within MPMX20_03210 at 3380.581 kb on - strand, within MPMX20_03210 at 3380.594 kb on - strand, within MPMX20_03210 at 3380.594 kb on - strand, within MPMX20_03210 at 3380.726 kb on - strand, within MPMX20_03210 at 3380.726 kb on - strand, within MPMX20_03210 at 3380.784 kb on - strand, within MPMX20_03210 at 3380.788 kb on - strand, within MPMX20_03210 at 3380.814 kb on + strand at 3380.863 kb on - strand at 3380.915 kb on + strand at 3380.915 kb on + strand at 3380.916 kb on - strand at 3380.960 kb on + strand, within MPMX20_03211
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 3,377,162 - MPMX20_03207 0.40 +1.6 3,377,174 + MPMX20_03207 0.40 +1.6 3,377,175 + MPMX20_03207 0.40 -0.7 3,377,192 - MPMX20_03207 0.42 -1.2 3,377,260 + MPMX20_03207 0.46 -0.2 3,377,265 + MPMX20_03207 0.46 -2.4 3,377,311 + MPMX20_03207 0.49 -1.0 3,377,396 + MPMX20_03207 0.55 -0.4 3,377,408 + MPMX20_03207 0.56 -0.9 3,377,498 - MPMX20_03207 0.62 +1.0 3,377,575 - MPMX20_03207 0.67 -1.7 3,377,711 + MPMX20_03207 0.75 -2.9 3,377,734 + MPMX20_03207 0.77 +2.6 3,377,798 - MPMX20_03207 0.81 -0.6 3,377,839 - MPMX20_03207 0.84 -1.1 3,377,853 - MPMX20_03207 0.85 -1.2 3,377,905 - MPMX20_03207 0.88 +0.3 3,377,956 + -1.0 3,377,964 - -1.1 3,377,964 - -1.2 3,378,117 - -2.4 3,378,129 - -2.3 3,378,172 + +1.0 3,378,173 - +1.0 3,378,258 + -1.4 3,378,319 + -1.6 3,378,339 + -0.0 3,378,386 - MPMX20_03208 0.12 -0.2 3,378,471 + MPMX20_03208 0.17 -1.6 3,378,500 - MPMX20_03208 0.18 -1.2 3,378,609 + MPMX20_03208 0.24 -0.4 3,378,662 - MPMX20_03208 0.27 -0.2 3,378,874 + MPMX20_03208 0.39 -0.6 3,378,966 + MPMX20_03208 0.44 -0.7 3,378,984 - MPMX20_03208 0.45 +1.0 3,379,095 - MPMX20_03208 0.51 -1.2 3,379,127 - MPMX20_03208 0.52 -1.6 3,379,135 - MPMX20_03208 0.53 -1.8 3,379,240 + MPMX20_03208 0.59 -1.2 3,379,240 + MPMX20_03208 0.59 -2.2 3,379,323 - MPMX20_03208 0.63 +0.0 3,379,346 + MPMX20_03208 0.64 +0.6 3,379,346 + MPMX20_03208 0.64 -1.6 3,379,354 - MPMX20_03208 0.65 -0.6 3,379,390 + MPMX20_03208 0.67 -1.2 3,379,451 + MPMX20_03208 0.70 -0.7 3,379,462 + MPMX20_03208 0.71 +1.0 3,379,482 + MPMX20_03208 0.72 -1.9 3,379,568 + MPMX20_03208 0.76 +1.4 3,379,640 + MPMX20_03208 0.80 -1.8 3,379,756 - MPMX20_03208 0.87 -1.7 3,379,799 + MPMX20_03208 0.89 +0.3 3,379,886 + +1.9 3,379,894 - -1.4 3,379,955 + +0.0 3,379,991 - -0.4 3,380,054 + MPMX20_03209 0.18 -1.0 3,380,074 + MPMX20_03209 0.24 -1.0 3,380,138 - MPMX20_03209 0.46 +0.0 3,380,168 + MPMX20_03209 0.55 -0.6 3,380,244 + MPMX20_03209 0.81 -1.1 3,380,257 - MPMX20_03209 0.85 +0.0 3,380,397 - MPMX20_03210 0.18 +2.6 3,380,423 - MPMX20_03210 0.22 -1.7 3,380,447 + MPMX20_03210 0.27 +1.6 3,380,465 - MPMX20_03210 0.30 +1.0 3,380,480 - MPMX20_03210 0.33 -2.2 3,380,573 + MPMX20_03210 0.49 -2.6 3,380,573 + MPMX20_03210 0.49 -1.3 3,380,581 - MPMX20_03210 0.51 -2.0 3,380,581 - MPMX20_03210 0.51 -1.2 3,380,594 - MPMX20_03210 0.53 -1.0 3,380,594 - MPMX20_03210 0.53 -1.7 3,380,726 - MPMX20_03210 0.77 -1.9 3,380,726 - MPMX20_03210 0.77 -0.4 3,380,784 - MPMX20_03210 0.87 -2.2 3,380,788 - MPMX20_03210 0.88 -0.6 3,380,814 + +0.0 3,380,863 - -3.0 3,380,915 + -0.2 3,380,915 + -2.0 3,380,916 - +0.6 3,380,960 + MPMX20_03211 0.18 -1.6
Or see this region's nucleotide sequence