Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03208

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03207 and MPMX20_03208 are separated by 76 nucleotidesMPMX20_03208 and MPMX20_03209 overlap by 4 nucleotidesMPMX20_03209 and MPMX20_03210 overlap by 4 nucleotidesMPMX20_03210 and MPMX20_03211 are separated by 10 nucleotides MPMX20_03207: MPMX20_03207 - NADH-quinone oxidoreductase subunit M, at 3,376,556 to 3,378,085 _03207 MPMX20_03208: MPMX20_03208 - NADH-quinone oxidoreductase subunit L, at 3,378,162 to 3,380,003 _03208 MPMX20_03209: MPMX20_03209 - NADH-quinone oxidoreductase subunit K, at 3,380,000 to 3,380,302 _03209 MPMX20_03210: MPMX20_03210 - NADH-quinone oxidoreductase subunit J, at 3,380,299 to 3,380,853 _03210 MPMX20_03211: MPMX20_03211 - NADH-quinone oxidoreductase subunit I, at 3,380,864 to 3,381,406 _03211 Position (kb) 3378 3379 3380 3381Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3377.162 kb on - strand, within MPMX20_03207at 3377.174 kb on + strand, within MPMX20_03207at 3377.175 kb on + strand, within MPMX20_03207at 3377.192 kb on - strand, within MPMX20_03207at 3377.260 kb on + strand, within MPMX20_03207at 3377.265 kb on + strand, within MPMX20_03207at 3377.311 kb on + strand, within MPMX20_03207at 3377.396 kb on + strand, within MPMX20_03207at 3377.408 kb on + strand, within MPMX20_03207at 3377.498 kb on - strand, within MPMX20_03207at 3377.575 kb on - strand, within MPMX20_03207at 3377.711 kb on + strand, within MPMX20_03207at 3377.734 kb on + strand, within MPMX20_03207at 3377.798 kb on - strand, within MPMX20_03207at 3377.839 kb on - strand, within MPMX20_03207at 3377.853 kb on - strand, within MPMX20_03207at 3377.905 kb on - strand, within MPMX20_03207at 3377.956 kb on + strandat 3377.964 kb on - strandat 3377.964 kb on - strandat 3378.117 kb on - strandat 3378.129 kb on - strandat 3378.172 kb on + strandat 3378.173 kb on - strandat 3378.258 kb on + strandat 3378.319 kb on + strandat 3378.339 kb on + strandat 3378.386 kb on - strand, within MPMX20_03208at 3378.471 kb on + strand, within MPMX20_03208at 3378.500 kb on - strand, within MPMX20_03208at 3378.609 kb on + strand, within MPMX20_03208at 3378.662 kb on - strand, within MPMX20_03208at 3378.874 kb on + strand, within MPMX20_03208at 3378.966 kb on + strand, within MPMX20_03208at 3378.984 kb on - strand, within MPMX20_03208at 3379.095 kb on - strand, within MPMX20_03208at 3379.127 kb on - strand, within MPMX20_03208at 3379.135 kb on - strand, within MPMX20_03208at 3379.240 kb on + strand, within MPMX20_03208at 3379.240 kb on + strand, within MPMX20_03208at 3379.323 kb on - strand, within MPMX20_03208at 3379.346 kb on + strand, within MPMX20_03208at 3379.346 kb on + strand, within MPMX20_03208at 3379.354 kb on - strand, within MPMX20_03208at 3379.390 kb on + strand, within MPMX20_03208at 3379.451 kb on + strand, within MPMX20_03208at 3379.462 kb on + strand, within MPMX20_03208at 3379.482 kb on + strand, within MPMX20_03208at 3379.568 kb on + strand, within MPMX20_03208at 3379.640 kb on + strand, within MPMX20_03208at 3379.756 kb on - strand, within MPMX20_03208at 3379.799 kb on + strand, within MPMX20_03208at 3379.886 kb on + strandat 3379.894 kb on - strandat 3379.955 kb on + strandat 3379.991 kb on - strandat 3380.054 kb on + strand, within MPMX20_03209at 3380.074 kb on + strand, within MPMX20_03209at 3380.138 kb on - strand, within MPMX20_03209at 3380.168 kb on + strand, within MPMX20_03209at 3380.244 kb on + strand, within MPMX20_03209at 3380.257 kb on - strand, within MPMX20_03209at 3380.397 kb on - strand, within MPMX20_03210at 3380.423 kb on - strand, within MPMX20_03210at 3380.447 kb on + strand, within MPMX20_03210at 3380.465 kb on - strand, within MPMX20_03210at 3380.480 kb on - strand, within MPMX20_03210at 3380.573 kb on + strand, within MPMX20_03210at 3380.573 kb on + strand, within MPMX20_03210at 3380.581 kb on - strand, within MPMX20_03210at 3380.581 kb on - strand, within MPMX20_03210at 3380.594 kb on - strand, within MPMX20_03210at 3380.594 kb on - strand, within MPMX20_03210at 3380.726 kb on - strand, within MPMX20_03210at 3380.726 kb on - strand, within MPMX20_03210at 3380.784 kb on - strand, within MPMX20_03210at 3380.788 kb on - strand, within MPMX20_03210at 3380.814 kb on + strandat 3380.863 kb on - strandat 3380.915 kb on + strandat 3380.915 kb on + strandat 3380.916 kb on - strandat 3380.960 kb on + strand, within MPMX20_03211

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
remove
3,377,162 - MPMX20_03207 0.40 +1.6
3,377,174 + MPMX20_03207 0.40 +1.6
3,377,175 + MPMX20_03207 0.40 -0.7
3,377,192 - MPMX20_03207 0.42 -1.2
3,377,260 + MPMX20_03207 0.46 -0.2
3,377,265 + MPMX20_03207 0.46 -2.4
3,377,311 + MPMX20_03207 0.49 -1.0
3,377,396 + MPMX20_03207 0.55 -0.4
3,377,408 + MPMX20_03207 0.56 -0.9
3,377,498 - MPMX20_03207 0.62 +1.0
3,377,575 - MPMX20_03207 0.67 -1.7
3,377,711 + MPMX20_03207 0.75 -2.9
3,377,734 + MPMX20_03207 0.77 +2.6
3,377,798 - MPMX20_03207 0.81 -0.6
3,377,839 - MPMX20_03207 0.84 -1.1
3,377,853 - MPMX20_03207 0.85 -1.2
3,377,905 - MPMX20_03207 0.88 +0.3
3,377,956 + -1.0
3,377,964 - -1.1
3,377,964 - -1.2
3,378,117 - -2.4
3,378,129 - -2.3
3,378,172 + +1.0
3,378,173 - +1.0
3,378,258 + -1.4
3,378,319 + -1.6
3,378,339 + -0.0
3,378,386 - MPMX20_03208 0.12 -0.2
3,378,471 + MPMX20_03208 0.17 -1.6
3,378,500 - MPMX20_03208 0.18 -1.2
3,378,609 + MPMX20_03208 0.24 -0.4
3,378,662 - MPMX20_03208 0.27 -0.2
3,378,874 + MPMX20_03208 0.39 -0.6
3,378,966 + MPMX20_03208 0.44 -0.7
3,378,984 - MPMX20_03208 0.45 +1.0
3,379,095 - MPMX20_03208 0.51 -1.2
3,379,127 - MPMX20_03208 0.52 -1.6
3,379,135 - MPMX20_03208 0.53 -1.8
3,379,240 + MPMX20_03208 0.59 -1.2
3,379,240 + MPMX20_03208 0.59 -2.2
3,379,323 - MPMX20_03208 0.63 +0.0
3,379,346 + MPMX20_03208 0.64 +0.6
3,379,346 + MPMX20_03208 0.64 -1.6
3,379,354 - MPMX20_03208 0.65 -0.6
3,379,390 + MPMX20_03208 0.67 -1.2
3,379,451 + MPMX20_03208 0.70 -0.7
3,379,462 + MPMX20_03208 0.71 +1.0
3,379,482 + MPMX20_03208 0.72 -1.9
3,379,568 + MPMX20_03208 0.76 +1.4
3,379,640 + MPMX20_03208 0.80 -1.8
3,379,756 - MPMX20_03208 0.87 -1.7
3,379,799 + MPMX20_03208 0.89 +0.3
3,379,886 + +1.9
3,379,894 - -1.4
3,379,955 + +0.0
3,379,991 - -0.4
3,380,054 + MPMX20_03209 0.18 -1.0
3,380,074 + MPMX20_03209 0.24 -1.0
3,380,138 - MPMX20_03209 0.46 +0.0
3,380,168 + MPMX20_03209 0.55 -0.6
3,380,244 + MPMX20_03209 0.81 -1.1
3,380,257 - MPMX20_03209 0.85 +0.0
3,380,397 - MPMX20_03210 0.18 +2.6
3,380,423 - MPMX20_03210 0.22 -1.7
3,380,447 + MPMX20_03210 0.27 +1.6
3,380,465 - MPMX20_03210 0.30 +1.0
3,380,480 - MPMX20_03210 0.33 -2.2
3,380,573 + MPMX20_03210 0.49 -2.6
3,380,573 + MPMX20_03210 0.49 -1.3
3,380,581 - MPMX20_03210 0.51 -2.0
3,380,581 - MPMX20_03210 0.51 -1.2
3,380,594 - MPMX20_03210 0.53 -1.0
3,380,594 - MPMX20_03210 0.53 -1.7
3,380,726 - MPMX20_03210 0.77 -1.9
3,380,726 - MPMX20_03210 0.77 -0.4
3,380,784 - MPMX20_03210 0.87 -2.2
3,380,788 - MPMX20_03210 0.88 -0.6
3,380,814 + +0.0
3,380,863 - -3.0
3,380,915 + -0.2
3,380,915 + -2.0
3,380,916 - +0.6
3,380,960 + MPMX20_03211 0.18 -1.6

Or see this region's nucleotide sequence