Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03206 and MPMX20_03207 are separated by 6 nucleotides MPMX20_03207 and MPMX20_03208 are separated by 76 nucleotides
MPMX20_03206: MPMX20_03206 - NADH-quinone oxidoreductase subunit N, at 3,375,092 to 3,376,549
_03206
MPMX20_03207: MPMX20_03207 - NADH-quinone oxidoreductase subunit M, at 3,376,556 to 3,378,085
_03207
MPMX20_03208: MPMX20_03208 - NADH-quinone oxidoreductase subunit L, at 3,378,162 to 3,380,003
_03208
Position (kb)
3376
3377
3378
3379 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3375.570 kb on - strand, within MPMX20_03206 at 3375.619 kb on + strand, within MPMX20_03206 at 3375.637 kb on - strand, within MPMX20_03206 at 3375.707 kb on + strand, within MPMX20_03206 at 3375.728 kb on + strand, within MPMX20_03206 at 3375.795 kb on - strand, within MPMX20_03206 at 3375.830 kb on + strand, within MPMX20_03206 at 3375.831 kb on + strand, within MPMX20_03206 at 3375.838 kb on - strand, within MPMX20_03206 at 3375.838 kb on - strand, within MPMX20_03206 at 3375.898 kb on + strand, within MPMX20_03206 at 3375.975 kb on + strand, within MPMX20_03206 at 3376.012 kb on - strand, within MPMX20_03206 at 3376.022 kb on - strand, within MPMX20_03206 at 3376.022 kb on - strand, within MPMX20_03206 at 3376.133 kb on - strand, within MPMX20_03206 at 3376.150 kb on + strand, within MPMX20_03206 at 3376.150 kb on + strand, within MPMX20_03206 at 3376.150 kb on + strand, within MPMX20_03206 at 3376.150 kb on + strand, within MPMX20_03206 at 3376.158 kb on - strand, within MPMX20_03206 at 3376.163 kb on + strand, within MPMX20_03206 at 3376.166 kb on - strand, within MPMX20_03206 at 3376.181 kb on - strand, within MPMX20_03206 at 3376.299 kb on + strand, within MPMX20_03206 at 3376.310 kb on + strand, within MPMX20_03206 at 3376.317 kb on + strand, within MPMX20_03206 at 3376.317 kb on + strand, within MPMX20_03206 at 3376.320 kb on + strand, within MPMX20_03206 at 3376.322 kb on + strand, within MPMX20_03206 at 3376.323 kb on - strand, within MPMX20_03206 at 3376.349 kb on + strand, within MPMX20_03206 at 3376.379 kb on - strand, within MPMX20_03206 at 3376.384 kb on - strand, within MPMX20_03206 at 3376.402 kb on + strand, within MPMX20_03206 at 3376.408 kb on - strand at 3376.432 kb on + strand at 3376.592 kb on + strand at 3376.748 kb on + strand, within MPMX20_03207 at 3376.796 kb on + strand, within MPMX20_03207 at 3376.837 kb on + strand, within MPMX20_03207 at 3376.855 kb on - strand, within MPMX20_03207 at 3376.890 kb on + strand, within MPMX20_03207 at 3376.983 kb on - strand, within MPMX20_03207 at 3377.028 kb on + strand, within MPMX20_03207 at 3377.107 kb on + strand, within MPMX20_03207 at 3377.154 kb on + strand, within MPMX20_03207 at 3377.162 kb on - strand, within MPMX20_03207 at 3377.174 kb on + strand, within MPMX20_03207 at 3377.175 kb on + strand, within MPMX20_03207 at 3377.192 kb on - strand, within MPMX20_03207 at 3377.260 kb on + strand, within MPMX20_03207 at 3377.265 kb on + strand, within MPMX20_03207 at 3377.311 kb on + strand, within MPMX20_03207 at 3377.396 kb on + strand, within MPMX20_03207 at 3377.408 kb on + strand, within MPMX20_03207 at 3377.498 kb on - strand, within MPMX20_03207 at 3377.575 kb on - strand, within MPMX20_03207 at 3377.711 kb on + strand, within MPMX20_03207 at 3377.734 kb on + strand, within MPMX20_03207 at 3377.798 kb on - strand, within MPMX20_03207 at 3377.839 kb on - strand, within MPMX20_03207 at 3377.853 kb on - strand, within MPMX20_03207 at 3377.905 kb on - strand, within MPMX20_03207 at 3377.956 kb on + strand at 3377.964 kb on - strand at 3377.964 kb on - strand at 3378.117 kb on - strand at 3378.129 kb on - strand at 3378.172 kb on + strand at 3378.173 kb on - strand at 3378.258 kb on + strand at 3378.319 kb on + strand at 3378.339 kb on + strand at 3378.386 kb on - strand, within MPMX20_03208 at 3378.471 kb on + strand, within MPMX20_03208 at 3378.500 kb on - strand, within MPMX20_03208 at 3378.609 kb on + strand, within MPMX20_03208 at 3378.662 kb on - strand, within MPMX20_03208 at 3378.874 kb on + strand, within MPMX20_03208 at 3378.966 kb on + strand, within MPMX20_03208 at 3378.984 kb on - strand, within MPMX20_03208
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 3,375,570 - MPMX20_03206 0.33 +0.0 3,375,619 + MPMX20_03206 0.36 -0.0 3,375,637 - MPMX20_03206 0.37 +0.6 3,375,707 + MPMX20_03206 0.42 -2.4 3,375,728 + MPMX20_03206 0.44 -0.2 3,375,795 - MPMX20_03206 0.48 -0.7 3,375,830 + MPMX20_03206 0.51 -0.4 3,375,831 + MPMX20_03206 0.51 -0.7 3,375,838 - MPMX20_03206 0.51 -1.0 3,375,838 - MPMX20_03206 0.51 -1.1 3,375,898 + MPMX20_03206 0.55 -1.4 3,375,975 + MPMX20_03206 0.61 -0.2 3,376,012 - MPMX20_03206 0.63 -0.7 3,376,022 - MPMX20_03206 0.64 -0.4 3,376,022 - MPMX20_03206 0.64 -0.6 3,376,133 - MPMX20_03206 0.71 -0.9 3,376,150 + MPMX20_03206 0.73 -0.2 3,376,150 + MPMX20_03206 0.73 -1.2 3,376,150 + MPMX20_03206 0.73 -0.7 3,376,150 + MPMX20_03206 0.73 -0.2 3,376,158 - MPMX20_03206 0.73 +0.6 3,376,163 + MPMX20_03206 0.73 -0.7 3,376,166 - MPMX20_03206 0.74 -1.6 3,376,181 - MPMX20_03206 0.75 -1.1 3,376,299 + MPMX20_03206 0.83 -0.4 3,376,310 + MPMX20_03206 0.84 +1.9 3,376,317 + MPMX20_03206 0.84 -0.2 3,376,317 + MPMX20_03206 0.84 +0.0 3,376,320 + MPMX20_03206 0.84 +0.3 3,376,322 + MPMX20_03206 0.84 -0.7 3,376,323 - MPMX20_03206 0.84 -0.0 3,376,349 + MPMX20_03206 0.86 -1.2 3,376,379 - MPMX20_03206 0.88 -2.1 3,376,384 - MPMX20_03206 0.89 -2.6 3,376,402 + MPMX20_03206 0.90 +0.0 3,376,408 - -2.2 3,376,432 + +0.6 3,376,592 + -0.9 3,376,748 + MPMX20_03207 0.13 -0.9 3,376,796 + MPMX20_03207 0.16 -1.6 3,376,837 + MPMX20_03207 0.18 +1.0 3,376,855 - MPMX20_03207 0.20 -0.2 3,376,890 + MPMX20_03207 0.22 -0.2 3,376,983 - MPMX20_03207 0.28 -1.2 3,377,028 + MPMX20_03207 0.31 -0.3 3,377,107 + MPMX20_03207 0.36 -1.9 3,377,154 + MPMX20_03207 0.39 -0.4 3,377,162 - MPMX20_03207 0.40 +1.6 3,377,174 + MPMX20_03207 0.40 +1.6 3,377,175 + MPMX20_03207 0.40 -0.7 3,377,192 - MPMX20_03207 0.42 -1.2 3,377,260 + MPMX20_03207 0.46 -0.2 3,377,265 + MPMX20_03207 0.46 -2.4 3,377,311 + MPMX20_03207 0.49 -1.0 3,377,396 + MPMX20_03207 0.55 -0.4 3,377,408 + MPMX20_03207 0.56 -0.9 3,377,498 - MPMX20_03207 0.62 +1.0 3,377,575 - MPMX20_03207 0.67 -1.7 3,377,711 + MPMX20_03207 0.75 -2.9 3,377,734 + MPMX20_03207 0.77 +2.6 3,377,798 - MPMX20_03207 0.81 -0.6 3,377,839 - MPMX20_03207 0.84 -1.1 3,377,853 - MPMX20_03207 0.85 -1.2 3,377,905 - MPMX20_03207 0.88 +0.3 3,377,956 + -1.0 3,377,964 - -1.1 3,377,964 - -1.2 3,378,117 - -2.4 3,378,129 - -2.3 3,378,172 + +1.0 3,378,173 - +1.0 3,378,258 + -1.4 3,378,319 + -1.6 3,378,339 + -0.0 3,378,386 - MPMX20_03208 0.12 -0.2 3,378,471 + MPMX20_03208 0.17 -1.6 3,378,500 - MPMX20_03208 0.18 -1.2 3,378,609 + MPMX20_03208 0.24 -0.4 3,378,662 - MPMX20_03208 0.27 -0.2 3,378,874 + MPMX20_03208 0.39 -0.6 3,378,966 + MPMX20_03208 0.44 -0.7 3,378,984 - MPMX20_03208 0.45 +1.0
Or see this region's nucleotide sequence