Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03205 and MPMX20_03206 are separated by 102 nucleotides MPMX20_03206 and MPMX20_03207 are separated by 6 nucleotides
MPMX20_03205: MPMX20_03205 - Chemotaxis protein CheV, at 3,373,985 to 3,374,989
_03205
MPMX20_03206: MPMX20_03206 - NADH-quinone oxidoreductase subunit N, at 3,375,092 to 3,376,549
_03206
MPMX20_03207: MPMX20_03207 - NADH-quinone oxidoreductase subunit M, at 3,376,556 to 3,378,085
_03207
Position (kb)
3375
3376
3377 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3374.111 kb on - strand, within MPMX20_03205 at 3374.112 kb on + strand, within MPMX20_03205 at 3374.112 kb on + strand, within MPMX20_03205 at 3374.112 kb on + strand, within MPMX20_03205 at 3374.120 kb on - strand, within MPMX20_03205 at 3374.120 kb on - strand, within MPMX20_03205 at 3374.120 kb on - strand, within MPMX20_03205 at 3374.164 kb on + strand, within MPMX20_03205 at 3374.253 kb on + strand, within MPMX20_03205 at 3374.305 kb on - strand, within MPMX20_03205 at 3374.456 kb on + strand, within MPMX20_03205 at 3374.472 kb on + strand, within MPMX20_03205 at 3374.476 kb on + strand, within MPMX20_03205 at 3374.495 kb on - strand, within MPMX20_03205 at 3374.507 kb on + strand, within MPMX20_03205 at 3374.536 kb on + strand, within MPMX20_03205 at 3374.573 kb on - strand, within MPMX20_03205 at 3374.574 kb on - strand, within MPMX20_03205 at 3374.624 kb on - strand, within MPMX20_03205 at 3374.680 kb on + strand, within MPMX20_03205 at 3374.680 kb on + strand, within MPMX20_03205 at 3374.686 kb on + strand, within MPMX20_03205 at 3374.686 kb on + strand, within MPMX20_03205 at 3374.686 kb on + strand, within MPMX20_03205 at 3374.688 kb on - strand, within MPMX20_03205 at 3374.688 kb on - strand, within MPMX20_03205 at 3374.694 kb on - strand, within MPMX20_03205 at 3374.694 kb on - strand, within MPMX20_03205 at 3374.721 kb on - strand, within MPMX20_03205 at 3374.722 kb on + strand, within MPMX20_03205 at 3374.731 kb on - strand, within MPMX20_03205 at 3374.757 kb on + strand, within MPMX20_03205 at 3374.757 kb on + strand, within MPMX20_03205 at 3374.757 kb on + strand, within MPMX20_03205 at 3374.757 kb on + strand, within MPMX20_03205 at 3374.757 kb on + strand, within MPMX20_03205 at 3374.757 kb on + strand, within MPMX20_03205 at 3374.765 kb on - strand, within MPMX20_03205 at 3374.765 kb on - strand, within MPMX20_03205 at 3374.765 kb on - strand, within MPMX20_03205 at 3374.765 kb on - strand, within MPMX20_03205 at 3374.765 kb on - strand, within MPMX20_03205 at 3374.765 kb on - strand, within MPMX20_03205 at 3374.765 kb on - strand, within MPMX20_03205 at 3374.765 kb on - strand, within MPMX20_03205 at 3374.794 kb on + strand, within MPMX20_03205 at 3374.889 kb on + strand at 3374.889 kb on + strand at 3374.927 kb on + strand at 3374.970 kb on + strand at 3374.978 kb on - strand at 3375.008 kb on - strand at 3375.008 kb on - strand at 3375.016 kb on - strand at 3375.018 kb on + strand at 3375.141 kb on - strand at 3375.176 kb on - strand at 3375.282 kb on - strand, within MPMX20_03206 at 3375.334 kb on - strand, within MPMX20_03206 at 3375.345 kb on + strand, within MPMX20_03206 at 3375.365 kb on - strand, within MPMX20_03206 at 3375.446 kb on + strand, within MPMX20_03206 at 3375.447 kb on + strand, within MPMX20_03206 at 3375.455 kb on - strand, within MPMX20_03206 at 3375.532 kb on + strand, within MPMX20_03206 at 3375.570 kb on - strand, within MPMX20_03206 at 3375.619 kb on + strand, within MPMX20_03206 at 3375.637 kb on - strand, within MPMX20_03206 at 3375.707 kb on + strand, within MPMX20_03206 at 3375.728 kb on + strand, within MPMX20_03206 at 3375.795 kb on - strand, within MPMX20_03206 at 3375.830 kb on + strand, within MPMX20_03206 at 3375.831 kb on + strand, within MPMX20_03206 at 3375.838 kb on - strand, within MPMX20_03206 at 3375.838 kb on - strand, within MPMX20_03206 at 3375.898 kb on + strand, within MPMX20_03206 at 3375.975 kb on + strand, within MPMX20_03206 at 3376.012 kb on - strand, within MPMX20_03206 at 3376.022 kb on - strand, within MPMX20_03206 at 3376.022 kb on - strand, within MPMX20_03206 at 3376.133 kb on - strand, within MPMX20_03206 at 3376.150 kb on + strand, within MPMX20_03206 at 3376.150 kb on + strand, within MPMX20_03206 at 3376.150 kb on + strand, within MPMX20_03206 at 3376.150 kb on + strand, within MPMX20_03206 at 3376.158 kb on - strand, within MPMX20_03206 at 3376.163 kb on + strand, within MPMX20_03206 at 3376.166 kb on - strand, within MPMX20_03206 at 3376.181 kb on - strand, within MPMX20_03206 at 3376.299 kb on + strand, within MPMX20_03206 at 3376.310 kb on + strand, within MPMX20_03206 at 3376.317 kb on + strand, within MPMX20_03206 at 3376.317 kb on + strand, within MPMX20_03206 at 3376.320 kb on + strand, within MPMX20_03206 at 3376.322 kb on + strand, within MPMX20_03206 at 3376.323 kb on - strand, within MPMX20_03206 at 3376.349 kb on + strand, within MPMX20_03206 at 3376.379 kb on - strand, within MPMX20_03206 at 3376.384 kb on - strand, within MPMX20_03206 at 3376.402 kb on + strand, within MPMX20_03206 at 3376.408 kb on - strand at 3376.432 kb on + strand at 3376.592 kb on + strand at 3376.748 kb on + strand, within MPMX20_03207 at 3376.796 kb on + strand, within MPMX20_03207 at 3376.837 kb on + strand, within MPMX20_03207 at 3376.855 kb on - strand, within MPMX20_03207 at 3376.890 kb on + strand, within MPMX20_03207 at 3376.983 kb on - strand, within MPMX20_03207 at 3377.028 kb on + strand, within MPMX20_03207 at 3377.107 kb on + strand, within MPMX20_03207 at 3377.154 kb on + strand, within MPMX20_03207 at 3377.162 kb on - strand, within MPMX20_03207 at 3377.174 kb on + strand, within MPMX20_03207 at 3377.175 kb on + strand, within MPMX20_03207 at 3377.192 kb on - strand, within MPMX20_03207 at 3377.260 kb on + strand, within MPMX20_03207 at 3377.265 kb on + strand, within MPMX20_03207 at 3377.311 kb on + strand, within MPMX20_03207 at 3377.396 kb on + strand, within MPMX20_03207 at 3377.408 kb on + strand, within MPMX20_03207 at 3377.498 kb on - strand, within MPMX20_03207
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 3,374,111 - MPMX20_03205 0.13 +0.6 3,374,112 + MPMX20_03205 0.13 -1.4 3,374,112 + MPMX20_03205 0.13 -2.3 3,374,112 + MPMX20_03205 0.13 +0.6 3,374,120 - MPMX20_03205 0.13 -1.0 3,374,120 - MPMX20_03205 0.13 +1.1 3,374,120 - MPMX20_03205 0.13 -0.4 3,374,164 + MPMX20_03205 0.18 +0.4 3,374,253 + MPMX20_03205 0.27 +1.9 3,374,305 - MPMX20_03205 0.32 -2.4 3,374,456 + MPMX20_03205 0.47 -1.2 3,374,472 + MPMX20_03205 0.48 +1.2 3,374,476 + MPMX20_03205 0.49 -2.0 3,374,495 - MPMX20_03205 0.51 -1.0 3,374,507 + MPMX20_03205 0.52 +1.2 3,374,536 + MPMX20_03205 0.55 +2.6 3,374,573 - MPMX20_03205 0.59 +1.0 3,374,574 - MPMX20_03205 0.59 +0.6 3,374,624 - MPMX20_03205 0.64 +1.6 3,374,680 + MPMX20_03205 0.69 -2.0 3,374,680 + MPMX20_03205 0.69 +1.7 3,374,686 + MPMX20_03205 0.70 -2.0 3,374,686 + MPMX20_03205 0.70 -1.4 3,374,686 + MPMX20_03205 0.70 -2.6 3,374,688 - MPMX20_03205 0.70 +0.2 3,374,688 - MPMX20_03205 0.70 +0.5 3,374,694 - MPMX20_03205 0.71 +1.6 3,374,694 - MPMX20_03205 0.71 -0.5 3,374,721 - MPMX20_03205 0.73 +4.2 3,374,722 + MPMX20_03205 0.73 -1.2 3,374,731 - MPMX20_03205 0.74 +1.2 3,374,757 + MPMX20_03205 0.77 -1.2 3,374,757 + MPMX20_03205 0.77 +1.0 3,374,757 + MPMX20_03205 0.77 +0.0 3,374,757 + MPMX20_03205 0.77 +2.3 3,374,757 + MPMX20_03205 0.77 -0.8 3,374,757 + MPMX20_03205 0.77 +0.9 3,374,765 - MPMX20_03205 0.78 -2.2 3,374,765 - MPMX20_03205 0.78 +0.8 3,374,765 - MPMX20_03205 0.78 -0.4 3,374,765 - MPMX20_03205 0.78 +0.9 3,374,765 - MPMX20_03205 0.78 -1.8 3,374,765 - MPMX20_03205 0.78 +0.0 3,374,765 - MPMX20_03205 0.78 +0.6 3,374,765 - MPMX20_03205 0.78 +1.6 3,374,794 + MPMX20_03205 0.80 -1.8 3,374,889 + +2.2 3,374,889 + +0.4 3,374,927 + -0.6 3,374,970 + -2.1 3,374,978 - -1.6 3,375,008 - -1.1 3,375,008 - -2.8 3,375,016 - -3.5 3,375,018 + +1.6 3,375,141 - -1.4 3,375,176 - +2.6 3,375,282 - MPMX20_03206 0.13 -0.9 3,375,334 - MPMX20_03206 0.17 -1.2 3,375,345 + MPMX20_03206 0.17 -1.6 3,375,365 - MPMX20_03206 0.19 -1.1 3,375,446 + MPMX20_03206 0.24 +0.0 3,375,447 + MPMX20_03206 0.24 -2.7 3,375,455 - MPMX20_03206 0.25 +0.0 3,375,532 + MPMX20_03206 0.30 -2.4 3,375,570 - MPMX20_03206 0.33 +0.0 3,375,619 + MPMX20_03206 0.36 -0.0 3,375,637 - MPMX20_03206 0.37 +0.6 3,375,707 + MPMX20_03206 0.42 -2.4 3,375,728 + MPMX20_03206 0.44 -0.2 3,375,795 - MPMX20_03206 0.48 -0.7 3,375,830 + MPMX20_03206 0.51 -0.4 3,375,831 + MPMX20_03206 0.51 -0.7 3,375,838 - MPMX20_03206 0.51 -1.0 3,375,838 - MPMX20_03206 0.51 -1.1 3,375,898 + MPMX20_03206 0.55 -1.4 3,375,975 + MPMX20_03206 0.61 -0.2 3,376,012 - MPMX20_03206 0.63 -0.7 3,376,022 - MPMX20_03206 0.64 -0.4 3,376,022 - MPMX20_03206 0.64 -0.6 3,376,133 - MPMX20_03206 0.71 -0.9 3,376,150 + MPMX20_03206 0.73 -0.2 3,376,150 + MPMX20_03206 0.73 -1.2 3,376,150 + MPMX20_03206 0.73 -0.7 3,376,150 + MPMX20_03206 0.73 -0.2 3,376,158 - MPMX20_03206 0.73 +0.6 3,376,163 + MPMX20_03206 0.73 -0.7 3,376,166 - MPMX20_03206 0.74 -1.6 3,376,181 - MPMX20_03206 0.75 -1.1 3,376,299 + MPMX20_03206 0.83 -0.4 3,376,310 + MPMX20_03206 0.84 +1.9 3,376,317 + MPMX20_03206 0.84 -0.2 3,376,317 + MPMX20_03206 0.84 +0.0 3,376,320 + MPMX20_03206 0.84 +0.3 3,376,322 + MPMX20_03206 0.84 -0.7 3,376,323 - MPMX20_03206 0.84 -0.0 3,376,349 + MPMX20_03206 0.86 -1.2 3,376,379 - MPMX20_03206 0.88 -2.1 3,376,384 - MPMX20_03206 0.89 -2.6 3,376,402 + MPMX20_03206 0.90 +0.0 3,376,408 - -2.2 3,376,432 + +0.6 3,376,592 + -0.9 3,376,748 + MPMX20_03207 0.13 -0.9 3,376,796 + MPMX20_03207 0.16 -1.6 3,376,837 + MPMX20_03207 0.18 +1.0 3,376,855 - MPMX20_03207 0.20 -0.2 3,376,890 + MPMX20_03207 0.22 -0.2 3,376,983 - MPMX20_03207 0.28 -1.2 3,377,028 + MPMX20_03207 0.31 -0.3 3,377,107 + MPMX20_03207 0.36 -1.9 3,377,154 + MPMX20_03207 0.39 -0.4 3,377,162 - MPMX20_03207 0.40 +1.6 3,377,174 + MPMX20_03207 0.40 +1.6 3,377,175 + MPMX20_03207 0.40 -0.7 3,377,192 - MPMX20_03207 0.42 -1.2 3,377,260 + MPMX20_03207 0.46 -0.2 3,377,265 + MPMX20_03207 0.46 -2.4 3,377,311 + MPMX20_03207 0.49 -1.0 3,377,396 + MPMX20_03207 0.55 -0.4 3,377,408 + MPMX20_03207 0.56 -0.9 3,377,498 - MPMX20_03207 0.62 +1.0
Or see this region's nucleotide sequence