Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02969 and MPMX20_02970 overlap by 4 nucleotides MPMX20_02970 and MPMX20_02971 overlap by 26 nucleotides
MPMX20_02969: MPMX20_02969 - Alpha-ketoglutarate permease, at 3,100,011 to 3,101,324
_02969
MPMX20_02970: MPMX20_02970 - Aconitate isomerase, at 3,101,321 to 3,102,109
_02970
MPMX20_02971: MPMX20_02971 - HTH-type transcriptional regulator CynR, at 3,102,084 to 3,102,983
_02971
Position (kb)
3101
3102
3103 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3100.342 kb on + strand, within MPMX20_02969 at 3100.342 kb on + strand, within MPMX20_02969 at 3100.342 kb on + strand, within MPMX20_02969 at 3100.347 kb on + strand, within MPMX20_02969 at 3100.347 kb on + strand, within MPMX20_02969 at 3100.350 kb on - strand, within MPMX20_02969 at 3100.350 kb on - strand, within MPMX20_02969 at 3100.355 kb on - strand, within MPMX20_02969 at 3100.355 kb on - strand, within MPMX20_02969 at 3100.355 kb on - strand, within MPMX20_02969 at 3100.355 kb on - strand, within MPMX20_02969 at 3100.359 kb on + strand, within MPMX20_02969 at 3100.359 kb on + strand, within MPMX20_02969 at 3100.367 kb on + strand, within MPMX20_02969 at 3100.367 kb on + strand, within MPMX20_02969 at 3100.410 kb on + strand, within MPMX20_02969 at 3100.413 kb on - strand, within MPMX20_02969 at 3100.418 kb on - strand, within MPMX20_02969 at 3100.521 kb on + strand, within MPMX20_02969 at 3100.529 kb on - strand, within MPMX20_02969 at 3100.574 kb on + strand, within MPMX20_02969 at 3100.579 kb on + strand, within MPMX20_02969 at 3100.579 kb on + strand, within MPMX20_02969 at 3100.582 kb on - strand, within MPMX20_02969 at 3100.587 kb on - strand, within MPMX20_02969 at 3100.587 kb on - strand, within MPMX20_02969 at 3100.639 kb on + strand, within MPMX20_02969 at 3100.639 kb on + strand, within MPMX20_02969 at 3100.648 kb on + strand, within MPMX20_02969 at 3100.648 kb on + strand, within MPMX20_02969 at 3100.651 kb on - strand, within MPMX20_02969 at 3100.666 kb on - strand, within MPMX20_02969 at 3100.666 kb on - strand, within MPMX20_02969 at 3100.827 kb on + strand, within MPMX20_02969 at 3100.899 kb on + strand, within MPMX20_02969 at 3100.929 kb on - strand, within MPMX20_02969 at 3100.966 kb on + strand, within MPMX20_02969 at 3100.969 kb on - strand, within MPMX20_02969 at 3100.974 kb on - strand, within MPMX20_02969 at 3101.046 kb on + strand, within MPMX20_02969 at 3101.084 kb on + strand, within MPMX20_02969 at 3101.092 kb on - strand, within MPMX20_02969 at 3101.122 kb on - strand, within MPMX20_02969 at 3101.131 kb on - strand, within MPMX20_02969 at 3101.155 kb on - strand, within MPMX20_02969 at 3101.198 kb on + strand at 3101.227 kb on - strand at 3101.249 kb on + strand at 3101.257 kb on + strand at 3101.257 kb on + strand at 3101.257 kb on - strand at 3101.365 kb on - strand at 3101.366 kb on + strand at 3101.410 kb on - strand, within MPMX20_02970 at 3101.488 kb on - strand, within MPMX20_02970 at 3101.495 kb on - strand, within MPMX20_02970 at 3101.505 kb on - strand, within MPMX20_02970 at 3101.522 kb on + strand, within MPMX20_02970 at 3101.604 kb on + strand, within MPMX20_02970 at 3101.621 kb on - strand, within MPMX20_02970 at 3101.622 kb on - strand, within MPMX20_02970 at 3101.641 kb on + strand, within MPMX20_02970 at 3101.772 kb on + strand, within MPMX20_02970 at 3101.780 kb on - strand, within MPMX20_02970 at 3101.815 kb on + strand, within MPMX20_02970 at 3101.883 kb on + strand, within MPMX20_02970 at 3101.883 kb on + strand, within MPMX20_02970 at 3101.883 kb on + strand, within MPMX20_02970 at 3101.891 kb on - strand, within MPMX20_02970 at 3101.986 kb on - strand, within MPMX20_02970 at 3102.011 kb on + strand, within MPMX20_02970 at 3102.046 kb on + strand at 3102.049 kb on - strand at 3102.052 kb on - strand at 3102.054 kb on - strand at 3102.054 kb on - strand at 3102.091 kb on + strand at 3102.091 kb on + strand at 3102.133 kb on + strand at 3102.167 kb on + strand at 3102.167 kb on + strand at 3102.203 kb on + strand, within MPMX20_02971 at 3102.203 kb on + strand, within MPMX20_02971 at 3102.211 kb on - strand, within MPMX20_02971 at 3102.216 kb on - strand, within MPMX20_02971 at 3102.218 kb on - strand, within MPMX20_02971 at 3102.348 kb on - strand, within MPMX20_02971 at 3102.365 kb on + strand, within MPMX20_02971 at 3102.365 kb on + strand, within MPMX20_02971 at 3102.365 kb on + strand, within MPMX20_02971 at 3102.365 kb on + strand, within MPMX20_02971 at 3102.365 kb on + strand, within MPMX20_02971 at 3102.373 kb on - strand, within MPMX20_02971 at 3102.400 kb on - strand, within MPMX20_02971 at 3102.400 kb on - strand, within MPMX20_02971 at 3102.405 kb on - strand, within MPMX20_02971 at 3102.434 kb on - strand, within MPMX20_02971 at 3102.459 kb on - strand, within MPMX20_02971 at 3102.599 kb on - strand, within MPMX20_02971 at 3102.666 kb on - strand, within MPMX20_02971 at 3102.750 kb on - strand, within MPMX20_02971 at 3102.772 kb on - strand, within MPMX20_02971 at 3102.783 kb on + strand, within MPMX20_02971 at 3102.806 kb on - strand, within MPMX20_02971 at 3102.841 kb on - strand, within MPMX20_02971 at 3102.841 kb on - strand, within MPMX20_02971 at 3102.873 kb on + strand, within MPMX20_02971 at 3102.876 kb on - strand, within MPMX20_02971 at 3102.878 kb on + strand, within MPMX20_02971 at 3102.878 kb on + strand, within MPMX20_02971 at 3102.949 kb on + strand at 3103.051 kb on - strand at 3103.073 kb on + strand at 3103.073 kb on + strand at 3103.081 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 3,100,342 + MPMX20_02969 0.25 +0.1 3,100,342 + MPMX20_02969 0.25 +1.8 3,100,342 + MPMX20_02969 0.25 +1.1 3,100,347 + MPMX20_02969 0.26 +0.0 3,100,347 + MPMX20_02969 0.26 +0.2 3,100,350 - MPMX20_02969 0.26 -1.6 3,100,350 - MPMX20_02969 0.26 -0.2 3,100,355 - MPMX20_02969 0.26 -2.2 3,100,355 - MPMX20_02969 0.26 -0.9 3,100,355 - MPMX20_02969 0.26 -0.7 3,100,355 - MPMX20_02969 0.26 +0.1 3,100,359 + MPMX20_02969 0.26 -1.6 3,100,359 + MPMX20_02969 0.26 +0.9 3,100,367 + MPMX20_02969 0.27 +1.8 3,100,367 + MPMX20_02969 0.27 +0.4 3,100,410 + MPMX20_02969 0.30 -1.6 3,100,413 - MPMX20_02969 0.31 -2.2 3,100,418 - MPMX20_02969 0.31 -2.0 3,100,521 + MPMX20_02969 0.39 +1.2 3,100,529 - MPMX20_02969 0.39 -0.7 3,100,574 + MPMX20_02969 0.43 +4.3 3,100,579 + MPMX20_02969 0.43 -2.1 3,100,579 + MPMX20_02969 0.43 -0.4 3,100,582 - MPMX20_02969 0.43 -0.0 3,100,587 - MPMX20_02969 0.44 -2.1 3,100,587 - MPMX20_02969 0.44 +0.8 3,100,639 + MPMX20_02969 0.48 +0.1 3,100,639 + MPMX20_02969 0.48 -1.2 3,100,648 + MPMX20_02969 0.48 -0.9 3,100,648 + MPMX20_02969 0.48 +1.8 3,100,651 - MPMX20_02969 0.49 -0.2 3,100,666 - MPMX20_02969 0.50 -1.1 3,100,666 - MPMX20_02969 0.50 -0.9 3,100,827 + MPMX20_02969 0.62 -0.1 3,100,899 + MPMX20_02969 0.68 -0.3 3,100,929 - MPMX20_02969 0.70 +1.0 3,100,966 + MPMX20_02969 0.73 -0.6 3,100,969 - MPMX20_02969 0.73 -1.2 3,100,974 - MPMX20_02969 0.73 +1.2 3,101,046 + MPMX20_02969 0.79 +0.8 3,101,084 + MPMX20_02969 0.82 -0.4 3,101,092 - MPMX20_02969 0.82 -0.5 3,101,122 - MPMX20_02969 0.85 +0.1 3,101,131 - MPMX20_02969 0.85 -1.4 3,101,155 - MPMX20_02969 0.87 +0.2 3,101,198 + -1.2 3,101,227 - -0.0 3,101,249 + +0.2 3,101,257 + -1.2 3,101,257 + -1.6 3,101,257 - -0.7 3,101,365 - -2.4 3,101,366 + -0.8 3,101,410 - MPMX20_02970 0.11 +0.2 3,101,488 - MPMX20_02970 0.21 -1.5 3,101,495 - MPMX20_02970 0.22 -1.0 3,101,505 - MPMX20_02970 0.23 -2.6 3,101,522 + MPMX20_02970 0.25 -1.0 3,101,604 + MPMX20_02970 0.36 -0.7 3,101,621 - MPMX20_02970 0.38 -0.3 3,101,622 - MPMX20_02970 0.38 -2.8 3,101,641 + MPMX20_02970 0.41 -2.1 3,101,772 + MPMX20_02970 0.57 -1.7 3,101,780 - MPMX20_02970 0.58 -1.2 3,101,815 + MPMX20_02970 0.63 +0.2 3,101,883 + MPMX20_02970 0.71 -2.0 3,101,883 + MPMX20_02970 0.71 +1.6 3,101,883 + MPMX20_02970 0.71 +0.6 3,101,891 - MPMX20_02970 0.72 -1.5 3,101,986 - MPMX20_02970 0.84 -1.9 3,102,011 + MPMX20_02970 0.87 -2.9 3,102,046 + +0.2 3,102,049 - -0.7 3,102,052 - +1.7 3,102,054 - -0.0 3,102,054 - -2.2 3,102,091 + -1.0 3,102,091 + +0.8 3,102,133 + +0.2 3,102,167 + -0.1 3,102,167 + +1.2 3,102,203 + MPMX20_02971 0.13 -0.6 3,102,203 + MPMX20_02971 0.13 -1.7 3,102,211 - MPMX20_02971 0.14 -0.1 3,102,216 - MPMX20_02971 0.15 -3.2 3,102,218 - MPMX20_02971 0.15 +1.4 3,102,348 - MPMX20_02971 0.29 -1.0 3,102,365 + MPMX20_02971 0.31 -0.6 3,102,365 + MPMX20_02971 0.31 -1.2 3,102,365 + MPMX20_02971 0.31 -0.5 3,102,365 + MPMX20_02971 0.31 -3.3 3,102,365 + MPMX20_02971 0.31 +0.0 3,102,373 - MPMX20_02971 0.32 +1.3 3,102,400 - MPMX20_02971 0.35 +0.2 3,102,400 - MPMX20_02971 0.35 -1.7 3,102,405 - MPMX20_02971 0.36 +1.5 3,102,434 - MPMX20_02971 0.39 -0.0 3,102,459 - MPMX20_02971 0.42 +1.3 3,102,599 - MPMX20_02971 0.57 +1.7 3,102,666 - MPMX20_02971 0.65 +1.2 3,102,750 - MPMX20_02971 0.74 +0.2 3,102,772 - MPMX20_02971 0.76 -1.3 3,102,783 + MPMX20_02971 0.78 -0.2 3,102,806 - MPMX20_02971 0.80 -2.5 3,102,841 - MPMX20_02971 0.84 +0.7 3,102,841 - MPMX20_02971 0.84 -0.7 3,102,873 + MPMX20_02971 0.88 +1.9 3,102,876 - MPMX20_02971 0.88 +0.8 3,102,878 + MPMX20_02971 0.88 -1.6 3,102,878 + MPMX20_02971 0.88 +0.7 3,102,949 + -0.4 3,103,051 - -1.0 3,103,073 + +2.0 3,103,073 + +0.5 3,103,081 - +0.4
Or see this region's nucleotide sequence