Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02917 and MPMX20_02918 are separated by 163 nucleotides MPMX20_02918 and MPMX20_02919 overlap by 1 nucleotides MPMX20_02919 and MPMX20_02920 are separated by 70 nucleotides
MPMX20_02917: MPMX20_02917 - hypothetical protein, at 3,055,301 to 3,055,450
_02917
MPMX20_02918: MPMX20_02918 - hypothetical protein, at 3,055,614 to 3,055,742
_02918
MPMX20_02919: MPMX20_02919 - hypothetical protein, at 3,055,742 to 3,055,939
_02919
MPMX20_02920: MPMX20_02920 - hypothetical protein, at 3,056,010 to 3,056,981
_02920
Position (kb)
3055
3056 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4
5
6
7 at 3054.749 kb on + strand at 3054.762 kb on - strand at 3054.779 kb on - strand at 3054.796 kb on + strand at 3054.796 kb on + strand at 3054.796 kb on + strand at 3054.844 kb on - strand at 3054.861 kb on + strand at 3054.881 kb on + strand at 3054.907 kb on - strand at 3054.918 kb on + strand at 3054.918 kb on + strand at 3054.926 kb on - strand at 3054.953 kb on + strand at 3055.005 kb on + strand at 3055.008 kb on - strand at 3055.012 kb on + strand at 3055.012 kb on + strand at 3055.012 kb on + strand at 3055.012 kb on + strand at 3055.012 kb on + strand at 3055.012 kb on + strand at 3055.020 kb on - strand at 3055.020 kb on - strand at 3055.020 kb on - strand at 3055.039 kb on + strand at 3055.054 kb on + strand at 3055.095 kb on + strand at 3055.095 kb on + strand at 3055.102 kb on + strand at 3055.103 kb on - strand at 3055.127 kb on + strand at 3055.161 kb on + strand at 3055.169 kb on - strand at 3055.265 kb on + strand at 3055.265 kb on + strand at 3055.265 kb on + strand at 3055.265 kb on + strand at 3055.265 kb on + strand at 3055.273 kb on - strand at 3055.273 kb on - strand at 3055.273 kb on - strand at 3055.276 kb on + strand at 3055.398 kb on + strand, within MPMX20_02917 at 3055.398 kb on + strand, within MPMX20_02917 at 3055.399 kb on + strand, within MPMX20_02917 at 3055.416 kb on - strand, within MPMX20_02917 at 3055.437 kb on - strand at 3055.445 kb on + strand at 3055.445 kb on + strand at 3055.445 kb on + strand at 3055.445 kb on + strand at 3055.453 kb on - strand at 3055.453 kb on - strand at 3055.453 kb on - strand at 3055.481 kb on - strand at 3055.524 kb on - strand at 3055.542 kb on + strand at 3055.566 kb on + strand at 3055.631 kb on + strand, within MPMX20_02918 at 3055.638 kb on - strand, within MPMX20_02918 at 3055.706 kb on + strand, within MPMX20_02918 at 3055.714 kb on - strand, within MPMX20_02918 at 3055.714 kb on - strand, within MPMX20_02918 at 3055.714 kb on - strand, within MPMX20_02918 at 3055.714 kb on - strand, within MPMX20_02918 at 3055.731 kb on + strand at 3055.732 kb on + strand at 3055.762 kb on + strand, within MPMX20_02919 at 3055.766 kb on - strand, within MPMX20_02919 at 3055.770 kb on - strand, within MPMX20_02919 at 3055.770 kb on - strand, within MPMX20_02919 at 3055.780 kb on + strand, within MPMX20_02919 at 3055.780 kb on + strand, within MPMX20_02919 at 3055.814 kb on + strand, within MPMX20_02919 at 3055.853 kb on + strand, within MPMX20_02919 at 3055.856 kb on - strand, within MPMX20_02919 at 3055.868 kb on + strand, within MPMX20_02919 at 3055.868 kb on + strand, within MPMX20_02919 at 3055.876 kb on - strand, within MPMX20_02919 at 3055.881 kb on - strand, within MPMX20_02919 at 3055.933 kb on + strand at 3055.933 kb on + strand at 3055.933 kb on + strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.945 kb on + strand at 3055.967 kb on - strand at 3056.024 kb on + strand at 3056.047 kb on + strand at 3056.083 kb on + strand at 3056.083 kb on + strand at 3056.083 kb on + strand at 3056.159 kb on - strand, within MPMX20_02920 at 3056.240 kb on + strand, within MPMX20_02920 at 3056.303 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.446 kb on - strand, within MPMX20_02920 at 3056.446 kb on - strand, within MPMX20_02920 at 3056.446 kb on - strand, within MPMX20_02920 at 3056.446 kb on - strand, within MPMX20_02920 at 3056.487 kb on - strand, within MPMX20_02920 at 3056.499 kb on + strand, within MPMX20_02920 at 3056.522 kb on + strand, within MPMX20_02920 at 3056.530 kb on - strand, within MPMX20_02920 at 3056.695 kb on - strand, within MPMX20_02920 at 3056.860 kb on - strand, within MPMX20_02920 at 3056.901 kb on + strand at 3056.901 kb on + strand at 3056.909 kb on - strand at 3056.926 kb on - strand at 3056.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 3,054,749 + -0.6 3,054,762 - -3.0 3,054,779 - -0.6 3,054,796 + -2.3 3,054,796 + +0.4 3,054,796 + -1.3 3,054,844 - -0.8 3,054,861 + -0.2 3,054,881 + +0.5 3,054,907 - +0.4 3,054,918 + -2.0 3,054,918 + -2.1 3,054,926 - -0.2 3,054,953 + -0.8 3,055,005 + -2.4 3,055,008 - -4.1 3,055,012 + +1.1 3,055,012 + -0.7 3,055,012 + +0.7 3,055,012 + -1.5 3,055,012 + -0.5 3,055,012 + -2.1 3,055,020 - -0.2 3,055,020 - -1.5 3,055,020 - -1.1 3,055,039 + -1.7 3,055,054 + +7.0 3,055,095 + -0.0 3,055,095 + -1.7 3,055,102 + -0.6 3,055,103 - -4.8 3,055,127 + +0.7 3,055,161 + -1.6 3,055,169 - -0.0 3,055,265 + -0.6 3,055,265 + -0.3 3,055,265 + -0.7 3,055,265 + -0.2 3,055,265 + -0.6 3,055,273 - -0.4 3,055,273 - -2.4 3,055,273 - -1.1 3,055,276 + -0.2 3,055,398 + MPMX20_02917 0.65 -1.3 3,055,398 + MPMX20_02917 0.65 -3.3 3,055,399 + MPMX20_02917 0.65 -0.4 3,055,416 - MPMX20_02917 0.77 -1.2 3,055,437 - -2.3 3,055,445 + -0.1 3,055,445 + +0.6 3,055,445 + -3.7 3,055,445 + -2.1 3,055,453 - +0.0 3,055,453 - -1.4 3,055,453 - +0.1 3,055,481 - -1.5 3,055,524 - -2.5 3,055,542 + -0.5 3,055,566 + -0.4 3,055,631 + MPMX20_02918 0.13 -2.3 3,055,638 - MPMX20_02918 0.19 -0.2 3,055,706 + MPMX20_02918 0.71 -0.8 3,055,714 - MPMX20_02918 0.78 +0.7 3,055,714 - MPMX20_02918 0.78 -1.4 3,055,714 - MPMX20_02918 0.78 -0.2 3,055,714 - MPMX20_02918 0.78 -1.0 3,055,731 + -4.1 3,055,732 + -2.0 3,055,762 + MPMX20_02919 0.10 -0.9 3,055,766 - MPMX20_02919 0.12 -3.2 3,055,770 - MPMX20_02919 0.14 -0.6 3,055,770 - MPMX20_02919 0.14 -0.5 3,055,780 + MPMX20_02919 0.19 -1.3 3,055,780 + MPMX20_02919 0.19 -0.4 3,055,814 + MPMX20_02919 0.36 -3.4 3,055,853 + MPMX20_02919 0.56 -2.0 3,055,856 - MPMX20_02919 0.58 -3.1 3,055,868 + MPMX20_02919 0.64 -2.9 3,055,868 + MPMX20_02919 0.64 -2.0 3,055,876 - MPMX20_02919 0.68 +0.9 3,055,881 - MPMX20_02919 0.70 +0.1 3,055,933 + +0.2 3,055,933 + -1.3 3,055,933 + -1.2 3,055,941 - -0.8 3,055,941 - -3.1 3,055,941 - -2.9 3,055,941 - +0.1 3,055,941 - -3.3 3,055,941 - -2.1 3,055,941 - -0.3 3,055,945 + -4.1 3,055,967 - -1.4 3,056,024 + -3.7 3,056,047 + -3.2 3,056,083 + -1.4 3,056,083 + -1.3 3,056,083 + -0.1 3,056,159 - MPMX20_02920 0.15 -0.8 3,056,240 + MPMX20_02920 0.24 -0.9 3,056,303 + MPMX20_02920 0.30 +0.5 3,056,438 + MPMX20_02920 0.44 -1.4 3,056,438 + MPMX20_02920 0.44 -2.8 3,056,438 + MPMX20_02920 0.44 -0.8 3,056,438 + MPMX20_02920 0.44 -1.2 3,056,438 + MPMX20_02920 0.44 -1.1 3,056,446 - MPMX20_02920 0.45 -3.7 3,056,446 - MPMX20_02920 0.45 -3.2 3,056,446 - MPMX20_02920 0.45 +0.0 3,056,446 - MPMX20_02920 0.45 -1.0 3,056,487 - MPMX20_02920 0.49 -1.0 3,056,499 + MPMX20_02920 0.50 -1.9 3,056,522 + MPMX20_02920 0.53 -1.8 3,056,530 - MPMX20_02920 0.53 -2.8 3,056,695 - MPMX20_02920 0.70 -0.3 3,056,860 - MPMX20_02920 0.87 -0.9 3,056,901 + -0.5 3,056,901 + -0.1 3,056,909 - -4.4 3,056,926 - +0.0 3,056,930 + -2.5
Or see this region's nucleotide sequence