Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02770

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02768 and MPMX20_02769 are separated by 34 nucleotidesMPMX20_02769 and MPMX20_02770 are separated by 27 nucleotidesMPMX20_02770 and MPMX20_02771 are separated by 1 nucleotides MPMX20_02768: MPMX20_02768 - Crossover junction endodeoxyribonuclease RuvC, at 2,923,397 to 2,923,918 _02768 MPMX20_02769: MPMX20_02769 - putative transcriptional regulatory protein YebC, at 2,923,953 to 2,924,693 _02769 MPMX20_02770: MPMX20_02770 - Dihydroneopterin triphosphate diphosphatase, at 2,924,721 to 2,925,164 _02770 MPMX20_02771: MPMX20_02771 - Aspartate--tRNA ligase, at 2,925,166 to 2,926,953 _02771 Position (kb) 2924 2925 2926Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2923.783 kb on - strand, within MPMX20_02768at 2923.783 kb on - strand, within MPMX20_02768at 2923.902 kb on - strandat 2923.928 kb on + strandat 2924.317 kb on + strand, within MPMX20_02769at 2924.414 kb on + strand, within MPMX20_02769at 2924.421 kb on + strand, within MPMX20_02769at 2924.527 kb on + strand, within MPMX20_02769at 2924.535 kb on - strand, within MPMX20_02769at 2924.577 kb on + strand, within MPMX20_02769at 2924.577 kb on + strand, within MPMX20_02769at 2924.650 kb on + strandat 2924.658 kb on - strandat 2924.668 kb on - strandat 2924.668 kb on - strandat 2924.780 kb on + strand, within MPMX20_02770at 2924.783 kb on - strand, within MPMX20_02770at 2924.788 kb on - strand, within MPMX20_02770at 2924.788 kb on - strand, within MPMX20_02770at 2924.944 kb on - strand, within MPMX20_02770at 2924.962 kb on - strand, within MPMX20_02770at 2924.989 kb on - strand, within MPMX20_02770at 2925.041 kb on + strand, within MPMX20_02770at 2925.041 kb on + strand, within MPMX20_02770at 2925.049 kb on - strand, within MPMX20_02770at 2925.049 kb on - strand, within MPMX20_02770at 2925.151 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
remove
2,923,783 - MPMX20_02768 0.74 -0.1
2,923,783 - MPMX20_02768 0.74 -0.9
2,923,902 - -0.1
2,923,928 + -2.7
2,924,317 + MPMX20_02769 0.49 +0.3
2,924,414 + MPMX20_02769 0.62 +1.2
2,924,421 + MPMX20_02769 0.63 -1.1
2,924,527 + MPMX20_02769 0.77 -0.1
2,924,535 - MPMX20_02769 0.79 +2.7
2,924,577 + MPMX20_02769 0.84 +0.3
2,924,577 + MPMX20_02769 0.84 +0.3
2,924,650 + -0.4
2,924,658 - +1.2
2,924,668 - -0.3
2,924,668 - -2.7
2,924,780 + MPMX20_02770 0.13 -2.3
2,924,783 - MPMX20_02770 0.14 +2.7
2,924,788 - MPMX20_02770 0.15 -1.4
2,924,788 - MPMX20_02770 0.15 -3.0
2,924,944 - MPMX20_02770 0.50 -2.1
2,924,962 - MPMX20_02770 0.54 -0.9
2,924,989 - MPMX20_02770 0.60 +2.1
2,925,041 + MPMX20_02770 0.72 -1.1
2,925,041 + MPMX20_02770 0.72 -2.2
2,925,049 - MPMX20_02770 0.74 +0.1
2,925,049 - MPMX20_02770 0.74 -0.3
2,925,151 + +2.9

Or see this region's nucleotide sequence