Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02720 and MPMX20_02721 are separated by 6 nucleotides MPMX20_02721 and MPMX20_02722 are separated by 462 nucleotides
MPMX20_02720: MPMX20_02720 - putative cyclic di-GMP phosphodiesterase PdeD, at 2,873,649 to 2,875,247
_02720
MPMX20_02721: MPMX20_02721 - hypothetical protein, at 2,875,254 to 2,876,813
_02721
MPMX20_02722: MPMX20_02722 - PTS system mannose-specific EIIAB component, at 2,877,276 to 2,878,238
_02722
Position (kb)
2875
2876
2877 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2874.383 kb on + strand, within MPMX20_02720 at 2874.415 kb on - strand, within MPMX20_02720 at 2874.415 kb on - strand, within MPMX20_02720 at 2874.415 kb on - strand, within MPMX20_02720 at 2874.415 kb on - strand, within MPMX20_02720 at 2874.601 kb on + strand, within MPMX20_02720 at 2874.609 kb on - strand, within MPMX20_02720 at 2874.710 kb on + strand, within MPMX20_02720 at 2874.864 kb on + strand, within MPMX20_02720 at 2874.864 kb on + strand, within MPMX20_02720 at 2874.872 kb on - strand, within MPMX20_02720 at 2874.872 kb on - strand, within MPMX20_02720 at 2874.991 kb on + strand, within MPMX20_02720 at 2875.014 kb on + strand, within MPMX20_02720 at 2875.046 kb on + strand, within MPMX20_02720 at 2875.047 kb on - strand, within MPMX20_02720 at 2875.051 kb on + strand, within MPMX20_02720 at 2875.051 kb on + strand, within MPMX20_02720 at 2875.059 kb on - strand, within MPMX20_02720 at 2875.059 kb on - strand, within MPMX20_02720 at 2875.080 kb on - strand, within MPMX20_02720 at 2875.114 kb on + strand at 2875.122 kb on - strand at 2875.148 kb on + strand at 2875.230 kb on - strand at 2875.298 kb on + strand at 2875.342 kb on + strand at 2875.398 kb on + strand at 2875.401 kb on - strand at 2875.422 kb on + strand, within MPMX20_02721 at 2875.451 kb on + strand, within MPMX20_02721 at 2875.489 kb on + strand, within MPMX20_02721 at 2875.588 kb on + strand, within MPMX20_02721 at 2875.593 kb on + strand, within MPMX20_02721 at 2875.601 kb on - strand, within MPMX20_02721 at 2875.601 kb on - strand, within MPMX20_02721 at 2875.664 kb on + strand, within MPMX20_02721 at 2875.731 kb on + strand, within MPMX20_02721 at 2875.819 kb on - strand, within MPMX20_02721 at 2875.833 kb on + strand, within MPMX20_02721 at 2875.869 kb on + strand, within MPMX20_02721 at 2876.023 kb on + strand, within MPMX20_02721 at 2876.090 kb on + strand, within MPMX20_02721 at 2876.129 kb on + strand, within MPMX20_02721 at 2876.165 kb on - strand, within MPMX20_02721 at 2876.175 kb on - strand, within MPMX20_02721 at 2876.248 kb on - strand, within MPMX20_02721 at 2876.302 kb on - strand, within MPMX20_02721 at 2876.307 kb on - strand, within MPMX20_02721 at 2876.421 kb on + strand, within MPMX20_02721 at 2876.541 kb on - strand, within MPMX20_02721 at 2876.568 kb on + strand, within MPMX20_02721 at 2876.603 kb on + strand, within MPMX20_02721 at 2876.603 kb on + strand, within MPMX20_02721 at 2876.626 kb on - strand, within MPMX20_02721 at 2876.641 kb on + strand, within MPMX20_02721 at 2876.649 kb on - strand, within MPMX20_02721 at 2876.649 kb on - strand, within MPMX20_02721 at 2876.659 kb on - strand at 2876.675 kb on - strand at 2876.758 kb on + strand at 2876.777 kb on + strand at 2876.845 kb on - strand at 2876.855 kb on - strand at 2876.973 kb on + strand at 2876.981 kb on + strand at 2876.981 kb on - strand at 2877.065 kb on - strand at 2877.093 kb on + strand at 2877.181 kb on + strand at 2877.234 kb on - strand at 2877.245 kb on - strand at 2877.273 kb on + strand at 2877.299 kb on - strand at 2877.313 kb on - strand at 2877.313 kb on - strand at 2877.318 kb on - strand at 2877.339 kb on - strand at 2877.342 kb on - strand at 2877.342 kb on - strand at 2877.416 kb on + strand, within MPMX20_02722 at 2877.424 kb on - strand, within MPMX20_02722 at 2877.432 kb on - strand, within MPMX20_02722 at 2877.449 kb on + strand, within MPMX20_02722 at 2877.570 kb on + strand, within MPMX20_02722 at 2877.570 kb on + strand, within MPMX20_02722 at 2877.577 kb on + strand, within MPMX20_02722 at 2877.577 kb on + strand, within MPMX20_02722 at 2877.585 kb on - strand, within MPMX20_02722 at 2877.637 kb on - strand, within MPMX20_02722 at 2877.725 kb on - strand, within MPMX20_02722 at 2877.728 kb on + strand, within MPMX20_02722 at 2877.759 kb on + strand, within MPMX20_02722 at 2877.760 kb on + strand, within MPMX20_02722 at 2877.797 kb on + strand, within MPMX20_02722
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 2,874,383 + MPMX20_02720 0.46 -0.2 2,874,415 - MPMX20_02720 0.48 +1.0 2,874,415 - MPMX20_02720 0.48 +0.3 2,874,415 - MPMX20_02720 0.48 +0.5 2,874,415 - MPMX20_02720 0.48 -1.0 2,874,601 + MPMX20_02720 0.60 -1.9 2,874,609 - MPMX20_02720 0.60 +0.8 2,874,710 + MPMX20_02720 0.66 -0.3 2,874,864 + MPMX20_02720 0.76 -1.1 2,874,864 + MPMX20_02720 0.76 -1.1 2,874,872 - MPMX20_02720 0.76 +0.9 2,874,872 - MPMX20_02720 0.76 -2.0 2,874,991 + MPMX20_02720 0.84 +0.7 2,875,014 + MPMX20_02720 0.85 -0.5 2,875,046 + MPMX20_02720 0.87 +0.3 2,875,047 - MPMX20_02720 0.87 -2.5 2,875,051 + MPMX20_02720 0.88 -0.4 2,875,051 + MPMX20_02720 0.88 +0.9 2,875,059 - MPMX20_02720 0.88 -0.1 2,875,059 - MPMX20_02720 0.88 -1.0 2,875,080 - MPMX20_02720 0.89 +1.5 2,875,114 + +2.4 2,875,122 - -3.2 2,875,148 + +0.8 2,875,230 - +0.3 2,875,298 + -1.8 2,875,342 + +0.3 2,875,398 + -0.9 2,875,401 - -2.0 2,875,422 + MPMX20_02721 0.11 -0.7 2,875,451 + MPMX20_02721 0.13 +0.0 2,875,489 + MPMX20_02721 0.15 -1.7 2,875,588 + MPMX20_02721 0.21 -0.3 2,875,593 + MPMX20_02721 0.22 -0.4 2,875,601 - MPMX20_02721 0.22 -1.4 2,875,601 - MPMX20_02721 0.22 -1.2 2,875,664 + MPMX20_02721 0.26 +0.2 2,875,731 + MPMX20_02721 0.31 +0.3 2,875,819 - MPMX20_02721 0.36 -1.6 2,875,833 + MPMX20_02721 0.37 -2.4 2,875,869 + MPMX20_02721 0.39 +3.0 2,876,023 + MPMX20_02721 0.49 -2.6 2,876,090 + MPMX20_02721 0.54 -0.6 2,876,129 + MPMX20_02721 0.56 +0.3 2,876,165 - MPMX20_02721 0.58 -0.2 2,876,175 - MPMX20_02721 0.59 -1.5 2,876,248 - MPMX20_02721 0.64 +0.1 2,876,302 - MPMX20_02721 0.67 -2.9 2,876,307 - MPMX20_02721 0.68 +0.3 2,876,421 + MPMX20_02721 0.75 -1.6 2,876,541 - MPMX20_02721 0.82 +1.0 2,876,568 + MPMX20_02721 0.84 -1.2 2,876,603 + MPMX20_02721 0.86 -0.4 2,876,603 + MPMX20_02721 0.86 +0.6 2,876,626 - MPMX20_02721 0.88 +0.1 2,876,641 + MPMX20_02721 0.89 -1.7 2,876,649 - MPMX20_02721 0.89 +0.3 2,876,649 - MPMX20_02721 0.89 +0.0 2,876,659 - -1.7 2,876,675 - +0.0 2,876,758 + +0.3 2,876,777 + -1.1 2,876,845 - -1.4 2,876,855 - +0.0 2,876,973 + +2.0 2,876,981 + +0.3 2,876,981 - -1.5 2,877,065 - -1.0 2,877,093 + +0.0 2,877,181 + -1.7 2,877,234 - +1.0 2,877,245 - +0.3 2,877,273 + -2.0 2,877,299 - -2.5 2,877,313 - +2.6 2,877,313 - -0.5 2,877,318 - -1.4 2,877,339 - -0.2 2,877,342 - -1.8 2,877,342 - +1.7 2,877,416 + MPMX20_02722 0.15 +1.8 2,877,424 - MPMX20_02722 0.15 +0.1 2,877,432 - MPMX20_02722 0.16 +0.0 2,877,449 + MPMX20_02722 0.18 -0.0 2,877,570 + MPMX20_02722 0.31 -1.3 2,877,570 + MPMX20_02722 0.31 +0.7 2,877,577 + MPMX20_02722 0.31 +0.3 2,877,577 + MPMX20_02722 0.31 +0.0 2,877,585 - MPMX20_02722 0.32 -0.1 2,877,637 - MPMX20_02722 0.37 -2.2 2,877,725 - MPMX20_02722 0.47 -0.2 2,877,728 + MPMX20_02722 0.47 +1.0 2,877,759 + MPMX20_02722 0.50 +0.9 2,877,760 + MPMX20_02722 0.50 -0.6 2,877,797 + MPMX20_02722 0.54 +0.4
Or see this region's nucleotide sequence