Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02721

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02720 and MPMX20_02721 are separated by 6 nucleotidesMPMX20_02721 and MPMX20_02722 are separated by 462 nucleotides MPMX20_02720: MPMX20_02720 - putative cyclic di-GMP phosphodiesterase PdeD, at 2,873,649 to 2,875,247 _02720 MPMX20_02721: MPMX20_02721 - hypothetical protein, at 2,875,254 to 2,876,813 _02721 MPMX20_02722: MPMX20_02722 - PTS system mannose-specific EIIAB component, at 2,877,276 to 2,878,238 _02722 Position (kb) 2875 2876 2877Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2874.383 kb on + strand, within MPMX20_02720at 2874.415 kb on - strand, within MPMX20_02720at 2874.415 kb on - strand, within MPMX20_02720at 2874.415 kb on - strand, within MPMX20_02720at 2874.415 kb on - strand, within MPMX20_02720at 2874.601 kb on + strand, within MPMX20_02720at 2874.609 kb on - strand, within MPMX20_02720at 2874.710 kb on + strand, within MPMX20_02720at 2874.864 kb on + strand, within MPMX20_02720at 2874.864 kb on + strand, within MPMX20_02720at 2874.872 kb on - strand, within MPMX20_02720at 2874.872 kb on - strand, within MPMX20_02720at 2874.991 kb on + strand, within MPMX20_02720at 2875.014 kb on + strand, within MPMX20_02720at 2875.046 kb on + strand, within MPMX20_02720at 2875.047 kb on - strand, within MPMX20_02720at 2875.051 kb on + strand, within MPMX20_02720at 2875.051 kb on + strand, within MPMX20_02720at 2875.059 kb on - strand, within MPMX20_02720at 2875.059 kb on - strand, within MPMX20_02720at 2875.080 kb on - strand, within MPMX20_02720at 2875.114 kb on + strandat 2875.122 kb on - strandat 2875.148 kb on + strandat 2875.230 kb on - strandat 2875.298 kb on + strandat 2875.342 kb on + strandat 2875.398 kb on + strandat 2875.401 kb on - strandat 2875.422 kb on + strand, within MPMX20_02721at 2875.451 kb on + strand, within MPMX20_02721at 2875.489 kb on + strand, within MPMX20_02721at 2875.588 kb on + strand, within MPMX20_02721at 2875.593 kb on + strand, within MPMX20_02721at 2875.601 kb on - strand, within MPMX20_02721at 2875.601 kb on - strand, within MPMX20_02721at 2875.664 kb on + strand, within MPMX20_02721at 2875.731 kb on + strand, within MPMX20_02721at 2875.819 kb on - strand, within MPMX20_02721at 2875.833 kb on + strand, within MPMX20_02721at 2875.869 kb on + strand, within MPMX20_02721at 2876.023 kb on + strand, within MPMX20_02721at 2876.090 kb on + strand, within MPMX20_02721at 2876.129 kb on + strand, within MPMX20_02721at 2876.165 kb on - strand, within MPMX20_02721at 2876.175 kb on - strand, within MPMX20_02721at 2876.248 kb on - strand, within MPMX20_02721at 2876.302 kb on - strand, within MPMX20_02721at 2876.307 kb on - strand, within MPMX20_02721at 2876.421 kb on + strand, within MPMX20_02721at 2876.541 kb on - strand, within MPMX20_02721at 2876.568 kb on + strand, within MPMX20_02721at 2876.603 kb on + strand, within MPMX20_02721at 2876.603 kb on + strand, within MPMX20_02721at 2876.626 kb on - strand, within MPMX20_02721at 2876.641 kb on + strand, within MPMX20_02721at 2876.649 kb on - strand, within MPMX20_02721at 2876.649 kb on - strand, within MPMX20_02721at 2876.659 kb on - strandat 2876.675 kb on - strandat 2876.758 kb on + strandat 2876.777 kb on + strandat 2876.845 kb on - strandat 2876.855 kb on - strandat 2876.973 kb on + strandat 2876.981 kb on + strandat 2876.981 kb on - strandat 2877.065 kb on - strandat 2877.093 kb on + strandat 2877.181 kb on + strandat 2877.234 kb on - strandat 2877.245 kb on - strandat 2877.273 kb on + strandat 2877.299 kb on - strandat 2877.313 kb on - strandat 2877.313 kb on - strandat 2877.318 kb on - strandat 2877.339 kb on - strandat 2877.342 kb on - strandat 2877.342 kb on - strandat 2877.416 kb on + strand, within MPMX20_02722at 2877.424 kb on - strand, within MPMX20_02722at 2877.432 kb on - strand, within MPMX20_02722at 2877.449 kb on + strand, within MPMX20_02722at 2877.570 kb on + strand, within MPMX20_02722at 2877.570 kb on + strand, within MPMX20_02722at 2877.577 kb on + strand, within MPMX20_02722at 2877.577 kb on + strand, within MPMX20_02722at 2877.585 kb on - strand, within MPMX20_02722at 2877.637 kb on - strand, within MPMX20_02722at 2877.725 kb on - strand, within MPMX20_02722at 2877.728 kb on + strand, within MPMX20_02722at 2877.759 kb on + strand, within MPMX20_02722at 2877.760 kb on + strand, within MPMX20_02722at 2877.797 kb on + strand, within MPMX20_02722

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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2,874,383 + MPMX20_02720 0.46 -0.2
2,874,415 - MPMX20_02720 0.48 +1.0
2,874,415 - MPMX20_02720 0.48 +0.3
2,874,415 - MPMX20_02720 0.48 +0.5
2,874,415 - MPMX20_02720 0.48 -1.0
2,874,601 + MPMX20_02720 0.60 -1.9
2,874,609 - MPMX20_02720 0.60 +0.8
2,874,710 + MPMX20_02720 0.66 -0.3
2,874,864 + MPMX20_02720 0.76 -1.1
2,874,864 + MPMX20_02720 0.76 -1.1
2,874,872 - MPMX20_02720 0.76 +0.9
2,874,872 - MPMX20_02720 0.76 -2.0
2,874,991 + MPMX20_02720 0.84 +0.7
2,875,014 + MPMX20_02720 0.85 -0.5
2,875,046 + MPMX20_02720 0.87 +0.3
2,875,047 - MPMX20_02720 0.87 -2.5
2,875,051 + MPMX20_02720 0.88 -0.4
2,875,051 + MPMX20_02720 0.88 +0.9
2,875,059 - MPMX20_02720 0.88 -0.1
2,875,059 - MPMX20_02720 0.88 -1.0
2,875,080 - MPMX20_02720 0.89 +1.5
2,875,114 + +2.4
2,875,122 - -3.2
2,875,148 + +0.8
2,875,230 - +0.3
2,875,298 + -1.8
2,875,342 + +0.3
2,875,398 + -0.9
2,875,401 - -2.0
2,875,422 + MPMX20_02721 0.11 -0.7
2,875,451 + MPMX20_02721 0.13 +0.0
2,875,489 + MPMX20_02721 0.15 -1.7
2,875,588 + MPMX20_02721 0.21 -0.3
2,875,593 + MPMX20_02721 0.22 -0.4
2,875,601 - MPMX20_02721 0.22 -1.4
2,875,601 - MPMX20_02721 0.22 -1.2
2,875,664 + MPMX20_02721 0.26 +0.2
2,875,731 + MPMX20_02721 0.31 +0.3
2,875,819 - MPMX20_02721 0.36 -1.6
2,875,833 + MPMX20_02721 0.37 -2.4
2,875,869 + MPMX20_02721 0.39 +3.0
2,876,023 + MPMX20_02721 0.49 -2.6
2,876,090 + MPMX20_02721 0.54 -0.6
2,876,129 + MPMX20_02721 0.56 +0.3
2,876,165 - MPMX20_02721 0.58 -0.2
2,876,175 - MPMX20_02721 0.59 -1.5
2,876,248 - MPMX20_02721 0.64 +0.1
2,876,302 - MPMX20_02721 0.67 -2.9
2,876,307 - MPMX20_02721 0.68 +0.3
2,876,421 + MPMX20_02721 0.75 -1.6
2,876,541 - MPMX20_02721 0.82 +1.0
2,876,568 + MPMX20_02721 0.84 -1.2
2,876,603 + MPMX20_02721 0.86 -0.4
2,876,603 + MPMX20_02721 0.86 +0.6
2,876,626 - MPMX20_02721 0.88 +0.1
2,876,641 + MPMX20_02721 0.89 -1.7
2,876,649 - MPMX20_02721 0.89 +0.3
2,876,649 - MPMX20_02721 0.89 +0.0
2,876,659 - -1.7
2,876,675 - +0.0
2,876,758 + +0.3
2,876,777 + -1.1
2,876,845 - -1.4
2,876,855 - +0.0
2,876,973 + +2.0
2,876,981 + +0.3
2,876,981 - -1.5
2,877,065 - -1.0
2,877,093 + +0.0
2,877,181 + -1.7
2,877,234 - +1.0
2,877,245 - +0.3
2,877,273 + -2.0
2,877,299 - -2.5
2,877,313 - +2.6
2,877,313 - -0.5
2,877,318 - -1.4
2,877,339 - -0.2
2,877,342 - -1.8
2,877,342 - +1.7
2,877,416 + MPMX20_02722 0.15 +1.8
2,877,424 - MPMX20_02722 0.15 +0.1
2,877,432 - MPMX20_02722 0.16 +0.0
2,877,449 + MPMX20_02722 0.18 -0.0
2,877,570 + MPMX20_02722 0.31 -1.3
2,877,570 + MPMX20_02722 0.31 +0.7
2,877,577 + MPMX20_02722 0.31 +0.3
2,877,577 + MPMX20_02722 0.31 +0.0
2,877,585 - MPMX20_02722 0.32 -0.1
2,877,637 - MPMX20_02722 0.37 -2.2
2,877,725 - MPMX20_02722 0.47 -0.2
2,877,728 + MPMX20_02722 0.47 +1.0
2,877,759 + MPMX20_02722 0.50 +0.9
2,877,760 + MPMX20_02722 0.50 -0.6
2,877,797 + MPMX20_02722 0.54 +0.4

Or see this region's nucleotide sequence