Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02141 and MPMX20_02142 are separated by 284 nucleotides MPMX20_02142 and MPMX20_02143 are separated by 11 nucleotides MPMX20_02143 and MPMX20_02144 are separated by 8 nucleotides
MPMX20_02141: MPMX20_02141 - Bifunctional protein PaaZ, at 2,233,559 to 2,235,598
_02141
MPMX20_02142: MPMX20_02142 - 1,2-phenylacetyl-CoA epoxidase, subunit A, at 2,235,883 to 2,236,812
_02142
MPMX20_02143: MPMX20_02143 - 1,2-phenylacetyl-CoA epoxidase, subunit B, at 2,236,824 to 2,237,111
_02143
MPMX20_02144: MPMX20_02144 - 1,2-phenylacetyl-CoA epoxidase, subunit C, at 2,237,120 to 2,237,866
_02144
Position (kb)
2235
2236
2237 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2234.913 kb on - strand, within MPMX20_02141 at 2234.913 kb on - strand, within MPMX20_02141 at 2235.018 kb on + strand, within MPMX20_02141 at 2235.089 kb on - strand, within MPMX20_02141 at 2235.173 kb on - strand, within MPMX20_02141 at 2235.270 kb on + strand, within MPMX20_02141 at 2235.272 kb on + strand, within MPMX20_02141 at 2235.272 kb on + strand, within MPMX20_02141 at 2235.273 kb on - strand, within MPMX20_02141 at 2235.280 kb on - strand, within MPMX20_02141 at 2235.332 kb on + strand, within MPMX20_02141 at 2235.335 kb on - strand, within MPMX20_02141 at 2235.337 kb on + strand, within MPMX20_02141 at 2235.340 kb on - strand, within MPMX20_02141 at 2235.354 kb on - strand, within MPMX20_02141 at 2235.511 kb on - strand at 2235.573 kb on + strand at 2235.688 kb on + strand at 2235.722 kb on + strand at 2235.730 kb on + strand at 2235.762 kb on + strand at 2235.762 kb on + strand at 2235.770 kb on - strand at 2235.791 kb on + strand at 2235.795 kb on + strand at 2235.796 kb on + strand at 2235.796 kb on + strand at 2235.796 kb on + strand at 2235.804 kb on - strand at 2235.875 kb on - strand at 2235.899 kb on + strand at 2235.916 kb on + strand at 2235.916 kb on + strand at 2235.917 kb on - strand at 2235.919 kb on - strand at 2235.924 kb on - strand at 2236.057 kb on - strand, within MPMX20_02142 at 2236.140 kb on + strand, within MPMX20_02142 at 2236.143 kb on - strand, within MPMX20_02142 at 2236.216 kb on + strand, within MPMX20_02142 at 2236.216 kb on + strand, within MPMX20_02142 at 2236.216 kb on + strand, within MPMX20_02142 at 2236.216 kb on + strand, within MPMX20_02142 at 2236.216 kb on + strand, within MPMX20_02142 at 2236.216 kb on + strand, within MPMX20_02142 at 2236.219 kb on - strand, within MPMX20_02142 at 2236.224 kb on - strand, within MPMX20_02142 at 2236.224 kb on - strand, within MPMX20_02142 at 2236.224 kb on - strand, within MPMX20_02142 at 2236.224 kb on - strand, within MPMX20_02142 at 2236.224 kb on - strand, within MPMX20_02142 at 2236.224 kb on - strand, within MPMX20_02142 at 2236.280 kb on + strand, within MPMX20_02142 at 2236.290 kb on + strand, within MPMX20_02142 at 2236.293 kb on - strand, within MPMX20_02142 at 2236.359 kb on + strand, within MPMX20_02142 at 2236.472 kb on - strand, within MPMX20_02142 at 2236.477 kb on - strand, within MPMX20_02142 at 2236.615 kb on - strand, within MPMX20_02142 at 2236.678 kb on - strand, within MPMX20_02142 at 2236.728 kb on + strand at 2236.748 kb on + strand at 2236.748 kb on + strand at 2236.955 kb on - strand, within MPMX20_02143 at 2236.955 kb on - strand, within MPMX20_02143 at 2236.956 kb on - strand, within MPMX20_02143 at 2237.028 kb on + strand, within MPMX20_02143 at 2237.103 kb on - strand at 2237.105 kb on + strand at 2237.113 kb on - strand at 2237.113 kb on - strand at 2237.113 kb on - strand at 2237.293 kb on + strand, within MPMX20_02144 at 2237.308 kb on - strand, within MPMX20_02144 at 2237.347 kb on + strand, within MPMX20_02144 at 2237.374 kb on + strand, within MPMX20_02144 at 2237.413 kb on - strand, within MPMX20_02144 at 2237.461 kb on - strand, within MPMX20_02144 at 2237.461 kb on - strand, within MPMX20_02144 at 2237.511 kb on + strand, within MPMX20_02144 at 2237.568 kb on + strand, within MPMX20_02144 at 2237.601 kb on + strand, within MPMX20_02144 at 2237.619 kb on - strand, within MPMX20_02144 at 2237.624 kb on - strand, within MPMX20_02144 at 2237.626 kb on + strand, within MPMX20_02144 at 2237.683 kb on - strand, within MPMX20_02144 at 2237.716 kb on + strand, within MPMX20_02144 at 2237.746 kb on - strand, within MPMX20_02144 at 2237.776 kb on + strand, within MPMX20_02144
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 2,234,913 - MPMX20_02141 0.66 -2.3 2,234,913 - MPMX20_02141 0.66 -1.6 2,235,018 + MPMX20_02141 0.72 +1.0 2,235,089 - MPMX20_02141 0.75 -3.3 2,235,173 - MPMX20_02141 0.79 +0.3 2,235,270 + MPMX20_02141 0.84 -1.0 2,235,272 + MPMX20_02141 0.84 +0.0 2,235,272 + MPMX20_02141 0.84 -1.9 2,235,273 - MPMX20_02141 0.84 -3.7 2,235,280 - MPMX20_02141 0.84 -1.1 2,235,332 + MPMX20_02141 0.87 -0.2 2,235,335 - MPMX20_02141 0.87 +1.0 2,235,337 + MPMX20_02141 0.87 -2.3 2,235,340 - MPMX20_02141 0.87 -1.2 2,235,354 - MPMX20_02141 0.88 -2.2 2,235,511 - -1.9 2,235,573 + -2.3 2,235,688 + -1.5 2,235,722 + -1.3 2,235,730 + +0.2 2,235,762 + -0.5 2,235,762 + -0.7 2,235,770 - +1.4 2,235,791 + -0.7 2,235,795 + -2.5 2,235,796 + +0.6 2,235,796 + -0.8 2,235,796 + -1.5 2,235,804 - +0.9 2,235,875 - +0.4 2,235,899 + +1.6 2,235,916 + -0.4 2,235,916 + +0.0 2,235,917 - -1.8 2,235,919 - -2.3 2,235,924 - +0.3 2,236,057 - MPMX20_02142 0.19 +0.0 2,236,140 + MPMX20_02142 0.28 -0.7 2,236,143 - MPMX20_02142 0.28 -1.8 2,236,216 + MPMX20_02142 0.36 -3.0 2,236,216 + MPMX20_02142 0.36 -2.7 2,236,216 + MPMX20_02142 0.36 -2.3 2,236,216 + MPMX20_02142 0.36 -2.3 2,236,216 + MPMX20_02142 0.36 -2.1 2,236,216 + MPMX20_02142 0.36 +0.0 2,236,219 - MPMX20_02142 0.36 +2.6 2,236,224 - MPMX20_02142 0.37 +1.6 2,236,224 - MPMX20_02142 0.37 -1.5 2,236,224 - MPMX20_02142 0.37 -0.5 2,236,224 - MPMX20_02142 0.37 -1.2 2,236,224 - MPMX20_02142 0.37 -3.5 2,236,224 - MPMX20_02142 0.37 -1.8 2,236,280 + MPMX20_02142 0.43 +3.6 2,236,290 + MPMX20_02142 0.44 -1.4 2,236,293 - MPMX20_02142 0.44 -0.4 2,236,359 + MPMX20_02142 0.51 +3.6 2,236,472 - MPMX20_02142 0.63 -1.5 2,236,477 - MPMX20_02142 0.64 -1.1 2,236,615 - MPMX20_02142 0.79 -4.3 2,236,678 - MPMX20_02142 0.85 +0.2 2,236,728 + -1.8 2,236,748 + +0.6 2,236,748 + -2.1 2,236,955 - MPMX20_02143 0.45 -1.3 2,236,955 - MPMX20_02143 0.45 -2.1 2,236,956 - MPMX20_02143 0.46 +0.2 2,237,028 + MPMX20_02143 0.71 -2.2 2,237,103 - -3.1 2,237,105 + +0.0 2,237,113 - -0.5 2,237,113 - -0.9 2,237,113 - +0.2 2,237,293 + MPMX20_02144 0.23 -0.3 2,237,308 - MPMX20_02144 0.25 -1.1 2,237,347 + MPMX20_02144 0.30 -1.9 2,237,374 + MPMX20_02144 0.34 +1.1 2,237,413 - MPMX20_02144 0.39 +3.5 2,237,461 - MPMX20_02144 0.46 +1.3 2,237,461 - MPMX20_02144 0.46 -1.7 2,237,511 + MPMX20_02144 0.52 -2.9 2,237,568 + MPMX20_02144 0.60 -2.1 2,237,601 + MPMX20_02144 0.64 -0.5 2,237,619 - MPMX20_02144 0.67 -0.9 2,237,624 - MPMX20_02144 0.67 -3.7 2,237,626 + MPMX20_02144 0.68 -0.4 2,237,683 - MPMX20_02144 0.75 -0.5 2,237,716 + MPMX20_02144 0.80 +2.3 2,237,746 - MPMX20_02144 0.84 -0.5 2,237,776 + MPMX20_02144 0.88 -0.5
Or see this region's nucleotide sequence