Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02136 and MPMX20_02137 are separated by 241 nucleotides MPMX20_02137 and MPMX20_02138 are separated by 41 nucleotides
MPMX20_02136: MPMX20_02136 - Transcriptional activator FeaR, at 2,225,104 to 2,226,012
_02136
MPMX20_02137: MPMX20_02137 - Phenylacetaldehyde dehydrogenase, at 2,226,254 to 2,227,753
_02137
MPMX20_02138: MPMX20_02138 - hypothetical protein, at 2,227,795 to 2,228,901
_02138
Position (kb)
2226
2227
2228 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 2225.256 kb on + strand, within MPMX20_02136 at 2225.256 kb on + strand, within MPMX20_02136 at 2225.256 kb on + strand, within MPMX20_02136 at 2225.296 kb on - strand, within MPMX20_02136 at 2225.324 kb on - strand, within MPMX20_02136 at 2225.382 kb on + strand, within MPMX20_02136 at 2225.404 kb on - strand, within MPMX20_02136 at 2225.560 kb on + strand, within MPMX20_02136 at 2225.567 kb on + strand, within MPMX20_02136 at 2225.569 kb on + strand, within MPMX20_02136 at 2225.618 kb on + strand, within MPMX20_02136 at 2225.705 kb on + strand, within MPMX20_02136 at 2225.713 kb on - strand, within MPMX20_02136 at 2225.713 kb on - strand, within MPMX20_02136 at 2225.739 kb on - strand, within MPMX20_02136 at 2225.739 kb on - strand, within MPMX20_02136 at 2225.739 kb on - strand, within MPMX20_02136 at 2225.754 kb on - strand, within MPMX20_02136 at 2225.792 kb on + strand, within MPMX20_02136 at 2225.844 kb on + strand, within MPMX20_02136 at 2225.847 kb on - strand, within MPMX20_02136 at 2225.847 kb on - strand, within MPMX20_02136 at 2225.852 kb on - strand, within MPMX20_02136 at 2225.852 kb on - strand, within MPMX20_02136 at 2225.852 kb on - strand, within MPMX20_02136 at 2225.882 kb on - strand, within MPMX20_02136 at 2225.986 kb on - strand at 2225.988 kb on + strand at 2226.124 kb on - strand at 2226.149 kb on + strand at 2226.157 kb on - strand at 2226.160 kb on - strand at 2226.160 kb on - strand at 2226.206 kb on + strand at 2226.217 kb on + strand at 2226.225 kb on - strand at 2226.225 kb on - strand at 2226.225 kb on - strand at 2226.250 kb on + strand at 2226.264 kb on - strand at 2226.349 kb on - strand at 2226.428 kb on + strand, within MPMX20_02137 at 2226.475 kb on - strand, within MPMX20_02137 at 2226.512 kb on - strand, within MPMX20_02137 at 2226.546 kb on + strand, within MPMX20_02137 at 2226.546 kb on + strand, within MPMX20_02137 at 2226.554 kb on - strand, within MPMX20_02137 at 2226.554 kb on - strand, within MPMX20_02137 at 2226.554 kb on - strand, within MPMX20_02137 at 2226.570 kb on - strand, within MPMX20_02137 at 2226.580 kb on + strand, within MPMX20_02137 at 2226.606 kb on + strand, within MPMX20_02137 at 2226.606 kb on + strand, within MPMX20_02137 at 2226.645 kb on + strand, within MPMX20_02137 at 2226.645 kb on + strand, within MPMX20_02137 at 2226.653 kb on - strand, within MPMX20_02137 at 2226.658 kb on - strand, within MPMX20_02137 at 2226.685 kb on - strand, within MPMX20_02137 at 2226.685 kb on - strand, within MPMX20_02137 at 2226.686 kb on - strand, within MPMX20_02137 at 2226.697 kb on - strand, within MPMX20_02137 at 2226.729 kb on - strand, within MPMX20_02137 at 2226.759 kb on + strand, within MPMX20_02137 at 2226.767 kb on - strand, within MPMX20_02137 at 2226.828 kb on + strand, within MPMX20_02137 at 2226.894 kb on + strand, within MPMX20_02137 at 2226.927 kb on - strand, within MPMX20_02137 at 2226.949 kb on + strand, within MPMX20_02137 at 2226.949 kb on + strand, within MPMX20_02137 at 2227.002 kb on + strand, within MPMX20_02137 at 2227.149 kb on + strand, within MPMX20_02137 at 2227.160 kb on + strand, within MPMX20_02137 at 2227.227 kb on + strand, within MPMX20_02137 at 2227.235 kb on - strand, within MPMX20_02137 at 2227.262 kb on - strand, within MPMX20_02137 at 2227.262 kb on - strand, within MPMX20_02137 at 2227.272 kb on + strand, within MPMX20_02137 at 2227.330 kb on - strand, within MPMX20_02137 at 2227.398 kb on + strand, within MPMX20_02137 at 2227.477 kb on + strand, within MPMX20_02137 at 2227.477 kb on + strand, within MPMX20_02137 at 2227.614 kb on - strand at 2227.637 kb on - strand at 2227.675 kb on + strand at 2227.675 kb on + strand at 2227.748 kb on - strand at 2227.762 kb on + strand at 2227.853 kb on - strand at 2227.857 kb on + strand at 2227.906 kb on + strand, within MPMX20_02138 at 2227.937 kb on - strand, within MPMX20_02138 at 2228.097 kb on + strand, within MPMX20_02138 at 2228.115 kb on - strand, within MPMX20_02138 at 2228.133 kb on + strand, within MPMX20_02138 at 2228.135 kb on + strand, within MPMX20_02138 at 2228.135 kb on + strand, within MPMX20_02138 at 2228.261 kb on - strand, within MPMX20_02138 at 2228.279 kb on + strand, within MPMX20_02138 at 2228.313 kb on + strand, within MPMX20_02138 at 2228.331 kb on + strand, within MPMX20_02138 at 2228.395 kb on - strand, within MPMX20_02138 at 2228.395 kb on - strand, within MPMX20_02138 at 2228.410 kb on + strand, within MPMX20_02138 at 2228.417 kb on - strand, within MPMX20_02138 at 2228.434 kb on + strand, within MPMX20_02138 at 2228.453 kb on + strand, within MPMX20_02138 at 2228.498 kb on - strand, within MPMX20_02138 at 2228.498 kb on - strand, within MPMX20_02138 at 2228.540 kb on + strand, within MPMX20_02138 at 2228.548 kb on - strand, within MPMX20_02138 at 2228.548 kb on - strand, within MPMX20_02138 at 2228.548 kb on - strand, within MPMX20_02138
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 2,225,256 + MPMX20_02136 0.17 +0.3 2,225,256 + MPMX20_02136 0.17 -1.9 2,225,256 + MPMX20_02136 0.17 -0.2 2,225,296 - MPMX20_02136 0.21 +0.3 2,225,324 - MPMX20_02136 0.24 -0.4 2,225,382 + MPMX20_02136 0.31 +0.7 2,225,404 - MPMX20_02136 0.33 +0.6 2,225,560 + MPMX20_02136 0.50 -1.1 2,225,567 + MPMX20_02136 0.51 -0.0 2,225,569 + MPMX20_02136 0.51 +0.0 2,225,618 + MPMX20_02136 0.57 -2.7 2,225,705 + MPMX20_02136 0.66 +0.6 2,225,713 - MPMX20_02136 0.67 +3.1 2,225,713 - MPMX20_02136 0.67 -3.2 2,225,739 - MPMX20_02136 0.70 +2.0 2,225,739 - MPMX20_02136 0.70 -1.3 2,225,739 - MPMX20_02136 0.70 -0.5 2,225,754 - MPMX20_02136 0.72 +1.6 2,225,792 + MPMX20_02136 0.76 -0.7 2,225,844 + MPMX20_02136 0.81 -1.5 2,225,847 - MPMX20_02136 0.82 -3.3 2,225,847 - MPMX20_02136 0.82 -2.9 2,225,852 - MPMX20_02136 0.82 -0.5 2,225,852 - MPMX20_02136 0.82 +0.6 2,225,852 - MPMX20_02136 0.82 +1.1 2,225,882 - MPMX20_02136 0.86 -4.1 2,225,986 - +0.5 2,225,988 + +0.0 2,226,124 - +0.1 2,226,149 + +0.4 2,226,157 - -0.6 2,226,160 - +0.2 2,226,160 - -0.5 2,226,206 + +0.8 2,226,217 + +1.4 2,226,225 - -1.5 2,226,225 - -1.3 2,226,225 - -0.6 2,226,250 + +1.8 2,226,264 - +0.2 2,226,349 - +1.6 2,226,428 + MPMX20_02137 0.12 +0.2 2,226,475 - MPMX20_02137 0.15 -3.3 2,226,512 - MPMX20_02137 0.17 -1.8 2,226,546 + MPMX20_02137 0.19 -0.5 2,226,546 + MPMX20_02137 0.19 -0.4 2,226,554 - MPMX20_02137 0.20 -1.1 2,226,554 - MPMX20_02137 0.20 -2.3 2,226,554 - MPMX20_02137 0.20 -0.4 2,226,570 - MPMX20_02137 0.21 +0.2 2,226,580 + MPMX20_02137 0.22 +0.9 2,226,606 + MPMX20_02137 0.23 -0.7 2,226,606 + MPMX20_02137 0.23 -0.2 2,226,645 + MPMX20_02137 0.26 -1.5 2,226,645 + MPMX20_02137 0.26 -1.0 2,226,653 - MPMX20_02137 0.27 -2.6 2,226,658 - MPMX20_02137 0.27 -0.8 2,226,685 - MPMX20_02137 0.29 -0.4 2,226,685 - MPMX20_02137 0.29 +0.0 2,226,686 - MPMX20_02137 0.29 -1.1 2,226,697 - MPMX20_02137 0.30 -3.4 2,226,729 - MPMX20_02137 0.32 +1.1 2,226,759 + MPMX20_02137 0.34 -3.8 2,226,767 - MPMX20_02137 0.34 -1.8 2,226,828 + MPMX20_02137 0.38 -2.4 2,226,894 + MPMX20_02137 0.43 -2.9 2,226,927 - MPMX20_02137 0.45 -1.8 2,226,949 + MPMX20_02137 0.46 +1.1 2,226,949 + MPMX20_02137 0.46 -2.0 2,227,002 + MPMX20_02137 0.50 -1.1 2,227,149 + MPMX20_02137 0.60 -1.2 2,227,160 + MPMX20_02137 0.60 -2.7 2,227,227 + MPMX20_02137 0.65 -0.7 2,227,235 - MPMX20_02137 0.65 -1.9 2,227,262 - MPMX20_02137 0.67 -0.8 2,227,262 - MPMX20_02137 0.67 +1.6 2,227,272 + MPMX20_02137 0.68 +1.3 2,227,330 - MPMX20_02137 0.72 -2.2 2,227,398 + MPMX20_02137 0.76 +8.5 2,227,477 + MPMX20_02137 0.82 -2.6 2,227,477 + MPMX20_02137 0.82 +2.0 2,227,614 - +1.1 2,227,637 - +0.6 2,227,675 + -0.5 2,227,675 + -0.2 2,227,748 - +0.3 2,227,762 + +0.4 2,227,853 - -1.3 2,227,857 + +1.2 2,227,906 + MPMX20_02138 0.10 +0.0 2,227,937 - MPMX20_02138 0.13 -0.5 2,228,097 + MPMX20_02138 0.27 -1.9 2,228,115 - MPMX20_02138 0.29 +1.7 2,228,133 + MPMX20_02138 0.31 +2.0 2,228,135 + MPMX20_02138 0.31 -1.1 2,228,135 + MPMX20_02138 0.31 +1.1 2,228,261 - MPMX20_02138 0.42 +1.0 2,228,279 + MPMX20_02138 0.44 +1.5 2,228,313 + MPMX20_02138 0.47 -1.3 2,228,331 + MPMX20_02138 0.48 +1.5 2,228,395 - MPMX20_02138 0.54 -2.1 2,228,395 - MPMX20_02138 0.54 +1.0 2,228,410 + MPMX20_02138 0.56 -1.5 2,228,417 - MPMX20_02138 0.56 +5.1 2,228,434 + MPMX20_02138 0.58 -1.5 2,228,453 + MPMX20_02138 0.59 +1.6 2,228,498 - MPMX20_02138 0.64 -0.2 2,228,498 - MPMX20_02138 0.64 +0.2 2,228,540 + MPMX20_02138 0.67 -2.5 2,228,548 - MPMX20_02138 0.68 +3.6 2,228,548 - MPMX20_02138 0.68 +0.2 2,228,548 - MPMX20_02138 0.68 -3.4
Or see this region's nucleotide sequence