Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02033 and MPMX20_02034 are separated by 110 nucleotides MPMX20_02034 and MPMX20_02035 are separated by 134 nucleotides
MPMX20_02033: MPMX20_02033 - Universal stress protein E, at 2,126,127 to 2,127,077
_02033
MPMX20_02034: MPMX20_02034 - hypothetical protein, at 2,127,188 to 2,127,382
_02034
MPMX20_02035: MPMX20_02035 - Fumarate and nitrate reduction regulatory protein, at 2,127,517 to 2,128,269
_02035
Position (kb)
2127
2128 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 2126.208 kb on + strand at 2126.266 kb on + strand, within MPMX20_02033 at 2126.274 kb on - strand, within MPMX20_02033 at 2126.276 kb on + strand, within MPMX20_02033 at 2126.292 kb on + strand, within MPMX20_02033 at 2126.432 kb on - strand, within MPMX20_02033 at 2126.432 kb on - strand, within MPMX20_02033 at 2126.443 kb on + strand, within MPMX20_02033 at 2126.446 kb on - strand, within MPMX20_02033 at 2126.488 kb on + strand, within MPMX20_02033 at 2126.512 kb on - strand, within MPMX20_02033 at 2126.513 kb on + strand, within MPMX20_02033 at 2126.519 kb on - strand, within MPMX20_02033 at 2126.637 kb on + strand, within MPMX20_02033 at 2126.645 kb on - strand, within MPMX20_02033 at 2126.693 kb on + strand, within MPMX20_02033 at 2126.741 kb on + strand, within MPMX20_02033 at 2126.755 kb on - strand, within MPMX20_02033 at 2126.756 kb on - strand, within MPMX20_02033 at 2126.800 kb on + strand, within MPMX20_02033 at 2126.802 kb on - strand, within MPMX20_02033 at 2126.845 kb on + strand, within MPMX20_02033 at 2126.853 kb on - strand, within MPMX20_02033 at 2126.862 kb on + strand, within MPMX20_02033 at 2126.898 kb on - strand, within MPMX20_02033 at 2126.898 kb on - strand, within MPMX20_02033 at 2126.898 kb on - strand, within MPMX20_02033 at 2126.936 kb on + strand, within MPMX20_02033 at 2126.957 kb on - strand, within MPMX20_02033 at 2127.012 kb on + strand at 2127.020 kb on - strand at 2127.035 kb on + strand at 2127.035 kb on + strand at 2127.038 kb on - strand at 2127.043 kb on - strand at 2127.086 kb on + strand at 2127.086 kb on + strand at 2127.086 kb on + strand at 2127.093 kb on + strand at 2127.093 kb on + strand at 2127.094 kb on - strand at 2127.094 kb on - strand at 2127.094 kb on - strand at 2127.094 kb on - strand at 2127.094 kb on - strand at 2127.094 kb on - strand at 2127.094 kb on - strand at 2127.096 kb on - strand at 2127.103 kb on - strand at 2127.202 kb on + strand at 2127.217 kb on + strand, within MPMX20_02034 at 2127.228 kb on + strand, within MPMX20_02034 at 2127.306 kb on - strand, within MPMX20_02034 at 2127.311 kb on - strand, within MPMX20_02034 at 2127.313 kb on + strand, within MPMX20_02034 at 2127.313 kb on + strand, within MPMX20_02034 at 2127.313 kb on + strand, within MPMX20_02034 at 2127.329 kb on + strand, within MPMX20_02034 at 2127.382 kb on + strand at 2127.415 kb on + strand at 2127.423 kb on - strand at 2127.522 kb on - strand at 2127.654 kb on + strand, within MPMX20_02035 at 2127.654 kb on + strand, within MPMX20_02035 at 2127.662 kb on - strand, within MPMX20_02035 at 2127.662 kb on - strand, within MPMX20_02035 at 2127.812 kb on + strand, within MPMX20_02035 at 2127.820 kb on - strand, within MPMX20_02035 at 2127.935 kb on - strand, within MPMX20_02035 at 2127.948 kb on + strand, within MPMX20_02035 at 2127.998 kb on + strand, within MPMX20_02035 at 2128.006 kb on - strand, within MPMX20_02035 at 2128.016 kb on - strand, within MPMX20_02035 at 2128.028 kb on - strand, within MPMX20_02035 at 2128.064 kb on - strand, within MPMX20_02035 at 2128.064 kb on - strand, within MPMX20_02035 at 2128.099 kb on + strand, within MPMX20_02035 at 2128.126 kb on - strand, within MPMX20_02035 at 2128.164 kb on + strand, within MPMX20_02035 at 2128.172 kb on - strand, within MPMX20_02035 at 2128.199 kb on + strand at 2128.215 kb on + strand at 2128.240 kb on - strand at 2128.276 kb on + strand at 2128.284 kb on - strand at 2128.289 kb on - strand at 2128.323 kb on + strand at 2128.323 kb on + strand at 2128.332 kb on - strand at 2128.332 kb on - strand at 2128.333 kb on - strand at 2128.333 kb on - strand at 2128.333 kb on - strand at 2128.348 kb on - strand at 2128.359 kb on + strand at 2128.359 kb on - strand at 2128.379 kb on + strand at 2128.379 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 2,126,208 + +1.0 2,126,266 + MPMX20_02033 0.15 -0.1 2,126,274 - MPMX20_02033 0.15 +0.6 2,126,276 + MPMX20_02033 0.16 -2.3 2,126,292 + MPMX20_02033 0.17 +0.3 2,126,432 - MPMX20_02033 0.32 +1.6 2,126,432 - MPMX20_02033 0.32 +0.8 2,126,443 + MPMX20_02033 0.33 -1.5 2,126,446 - MPMX20_02033 0.34 -0.5 2,126,488 + MPMX20_02033 0.38 -0.5 2,126,512 - MPMX20_02033 0.40 -1.3 2,126,513 + MPMX20_02033 0.41 -2.6 2,126,519 - MPMX20_02033 0.41 -3.1 2,126,637 + MPMX20_02033 0.54 +0.1 2,126,645 - MPMX20_02033 0.54 +1.6 2,126,693 + MPMX20_02033 0.60 -3.1 2,126,741 + MPMX20_02033 0.65 -0.8 2,126,755 - MPMX20_02033 0.66 +4.1 2,126,756 - MPMX20_02033 0.66 -0.4 2,126,800 + MPMX20_02033 0.71 -0.2 2,126,802 - MPMX20_02033 0.71 -1.2 2,126,845 + MPMX20_02033 0.75 -2.0 2,126,853 - MPMX20_02033 0.76 +1.3 2,126,862 + MPMX20_02033 0.77 -0.8 2,126,898 - MPMX20_02033 0.81 -2.7 2,126,898 - MPMX20_02033 0.81 +0.4 2,126,898 - MPMX20_02033 0.81 -0.5 2,126,936 + MPMX20_02033 0.85 -2.6 2,126,957 - MPMX20_02033 0.87 +0.1 2,127,012 + -1.9 2,127,020 - +2.6 2,127,035 + +0.6 2,127,035 + +0.6 2,127,038 - -1.0 2,127,043 - -1.9 2,127,086 + +3.2 2,127,086 + +2.0 2,127,086 + +1.2 2,127,093 + -0.4 2,127,093 + -0.4 2,127,094 - +1.6 2,127,094 - -0.2 2,127,094 - -0.1 2,127,094 - +1.6 2,127,094 - -1.8 2,127,094 - -1.2 2,127,094 - -2.4 2,127,096 - -1.6 2,127,103 - +1.3 2,127,202 + +0.2 2,127,217 + MPMX20_02034 0.15 +0.1 2,127,228 + MPMX20_02034 0.21 -1.7 2,127,306 - MPMX20_02034 0.61 -0.2 2,127,311 - MPMX20_02034 0.63 -0.4 2,127,313 + MPMX20_02034 0.64 -4.0 2,127,313 + MPMX20_02034 0.64 +0.1 2,127,313 + MPMX20_02034 0.64 -0.9 2,127,329 + MPMX20_02034 0.72 -1.1 2,127,382 + +1.8 2,127,415 + -1.4 2,127,423 - -3.2 2,127,522 - +0.1 2,127,654 + MPMX20_02035 0.18 +0.3 2,127,654 + MPMX20_02035 0.18 +1.1 2,127,662 - MPMX20_02035 0.19 +0.1 2,127,662 - MPMX20_02035 0.19 -0.4 2,127,812 + MPMX20_02035 0.39 +1.6 2,127,820 - MPMX20_02035 0.40 +0.2 2,127,935 - MPMX20_02035 0.56 +1.6 2,127,948 + MPMX20_02035 0.57 -0.8 2,127,998 + MPMX20_02035 0.64 +1.8 2,128,006 - MPMX20_02035 0.65 +2.6 2,128,016 - MPMX20_02035 0.66 +2.1 2,128,028 - MPMX20_02035 0.68 +1.0 2,128,064 - MPMX20_02035 0.73 +2.6 2,128,064 - MPMX20_02035 0.73 -1.2 2,128,099 + MPMX20_02035 0.77 +5.5 2,128,126 - MPMX20_02035 0.81 +0.3 2,128,164 + MPMX20_02035 0.86 -0.4 2,128,172 - MPMX20_02035 0.87 +2.7 2,128,199 + +4.5 2,128,215 + -2.4 2,128,240 - +1.1 2,128,276 + +1.4 2,128,284 - -0.2 2,128,289 - +0.6 2,128,323 + -1.1 2,128,323 + -0.3 2,128,332 - -0.9 2,128,332 - +1.3 2,128,333 - -2.8 2,128,333 - -1.7 2,128,333 - +0.1 2,128,348 - +1.4 2,128,359 + -2.1 2,128,359 - +0.4 2,128,379 + +0.1 2,128,379 + +2.1
Or see this region's nucleotide sequence