Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02034

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02033 and MPMX20_02034 are separated by 110 nucleotidesMPMX20_02034 and MPMX20_02035 are separated by 134 nucleotides MPMX20_02033: MPMX20_02033 - Universal stress protein E, at 2,126,127 to 2,127,077 _02033 MPMX20_02034: MPMX20_02034 - hypothetical protein, at 2,127,188 to 2,127,382 _02034 MPMX20_02035: MPMX20_02035 - Fumarate and nitrate reduction regulatory protein, at 2,127,517 to 2,128,269 _02035 Position (kb) 2127 2128Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 2126.208 kb on + strandat 2126.266 kb on + strand, within MPMX20_02033at 2126.274 kb on - strand, within MPMX20_02033at 2126.276 kb on + strand, within MPMX20_02033at 2126.292 kb on + strand, within MPMX20_02033at 2126.432 kb on - strand, within MPMX20_02033at 2126.432 kb on - strand, within MPMX20_02033at 2126.443 kb on + strand, within MPMX20_02033at 2126.446 kb on - strand, within MPMX20_02033at 2126.488 kb on + strand, within MPMX20_02033at 2126.512 kb on - strand, within MPMX20_02033at 2126.513 kb on + strand, within MPMX20_02033at 2126.519 kb on - strand, within MPMX20_02033at 2126.637 kb on + strand, within MPMX20_02033at 2126.645 kb on - strand, within MPMX20_02033at 2126.693 kb on + strand, within MPMX20_02033at 2126.741 kb on + strand, within MPMX20_02033at 2126.755 kb on - strand, within MPMX20_02033at 2126.756 kb on - strand, within MPMX20_02033at 2126.800 kb on + strand, within MPMX20_02033at 2126.802 kb on - strand, within MPMX20_02033at 2126.845 kb on + strand, within MPMX20_02033at 2126.853 kb on - strand, within MPMX20_02033at 2126.862 kb on + strand, within MPMX20_02033at 2126.898 kb on - strand, within MPMX20_02033at 2126.898 kb on - strand, within MPMX20_02033at 2126.898 kb on - strand, within MPMX20_02033at 2126.936 kb on + strand, within MPMX20_02033at 2126.957 kb on - strand, within MPMX20_02033at 2127.012 kb on + strandat 2127.020 kb on - strandat 2127.035 kb on + strandat 2127.035 kb on + strandat 2127.038 kb on - strandat 2127.043 kb on - strandat 2127.086 kb on + strandat 2127.086 kb on + strandat 2127.086 kb on + strandat 2127.093 kb on + strandat 2127.093 kb on + strandat 2127.094 kb on - strandat 2127.094 kb on - strandat 2127.094 kb on - strandat 2127.094 kb on - strandat 2127.094 kb on - strandat 2127.094 kb on - strandat 2127.094 kb on - strandat 2127.096 kb on - strandat 2127.103 kb on - strandat 2127.202 kb on + strandat 2127.217 kb on + strand, within MPMX20_02034at 2127.228 kb on + strand, within MPMX20_02034at 2127.306 kb on - strand, within MPMX20_02034at 2127.311 kb on - strand, within MPMX20_02034at 2127.313 kb on + strand, within MPMX20_02034at 2127.313 kb on + strand, within MPMX20_02034at 2127.313 kb on + strand, within MPMX20_02034at 2127.329 kb on + strand, within MPMX20_02034at 2127.382 kb on + strandat 2127.415 kb on + strandat 2127.423 kb on - strandat 2127.522 kb on - strandat 2127.654 kb on + strand, within MPMX20_02035at 2127.654 kb on + strand, within MPMX20_02035at 2127.662 kb on - strand, within MPMX20_02035at 2127.662 kb on - strand, within MPMX20_02035at 2127.812 kb on + strand, within MPMX20_02035at 2127.820 kb on - strand, within MPMX20_02035at 2127.935 kb on - strand, within MPMX20_02035at 2127.948 kb on + strand, within MPMX20_02035at 2127.998 kb on + strand, within MPMX20_02035at 2128.006 kb on - strand, within MPMX20_02035at 2128.016 kb on - strand, within MPMX20_02035at 2128.028 kb on - strand, within MPMX20_02035at 2128.064 kb on - strand, within MPMX20_02035at 2128.064 kb on - strand, within MPMX20_02035at 2128.099 kb on + strand, within MPMX20_02035at 2128.126 kb on - strand, within MPMX20_02035at 2128.164 kb on + strand, within MPMX20_02035at 2128.172 kb on - strand, within MPMX20_02035at 2128.199 kb on + strandat 2128.215 kb on + strandat 2128.240 kb on - strandat 2128.276 kb on + strandat 2128.284 kb on - strandat 2128.289 kb on - strandat 2128.323 kb on + strandat 2128.323 kb on + strandat 2128.332 kb on - strandat 2128.332 kb on - strandat 2128.333 kb on - strandat 2128.333 kb on - strandat 2128.333 kb on - strandat 2128.348 kb on - strandat 2128.359 kb on + strandat 2128.359 kb on - strandat 2128.379 kb on + strandat 2128.379 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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2,126,208 + +1.0
2,126,266 + MPMX20_02033 0.15 -0.1
2,126,274 - MPMX20_02033 0.15 +0.6
2,126,276 + MPMX20_02033 0.16 -2.3
2,126,292 + MPMX20_02033 0.17 +0.3
2,126,432 - MPMX20_02033 0.32 +1.6
2,126,432 - MPMX20_02033 0.32 +0.8
2,126,443 + MPMX20_02033 0.33 -1.5
2,126,446 - MPMX20_02033 0.34 -0.5
2,126,488 + MPMX20_02033 0.38 -0.5
2,126,512 - MPMX20_02033 0.40 -1.3
2,126,513 + MPMX20_02033 0.41 -2.6
2,126,519 - MPMX20_02033 0.41 -3.1
2,126,637 + MPMX20_02033 0.54 +0.1
2,126,645 - MPMX20_02033 0.54 +1.6
2,126,693 + MPMX20_02033 0.60 -3.1
2,126,741 + MPMX20_02033 0.65 -0.8
2,126,755 - MPMX20_02033 0.66 +4.1
2,126,756 - MPMX20_02033 0.66 -0.4
2,126,800 + MPMX20_02033 0.71 -0.2
2,126,802 - MPMX20_02033 0.71 -1.2
2,126,845 + MPMX20_02033 0.75 -2.0
2,126,853 - MPMX20_02033 0.76 +1.3
2,126,862 + MPMX20_02033 0.77 -0.8
2,126,898 - MPMX20_02033 0.81 -2.7
2,126,898 - MPMX20_02033 0.81 +0.4
2,126,898 - MPMX20_02033 0.81 -0.5
2,126,936 + MPMX20_02033 0.85 -2.6
2,126,957 - MPMX20_02033 0.87 +0.1
2,127,012 + -1.9
2,127,020 - +2.6
2,127,035 + +0.6
2,127,035 + +0.6
2,127,038 - -1.0
2,127,043 - -1.9
2,127,086 + +3.2
2,127,086 + +2.0
2,127,086 + +1.2
2,127,093 + -0.4
2,127,093 + -0.4
2,127,094 - +1.6
2,127,094 - -0.2
2,127,094 - -0.1
2,127,094 - +1.6
2,127,094 - -1.8
2,127,094 - -1.2
2,127,094 - -2.4
2,127,096 - -1.6
2,127,103 - +1.3
2,127,202 + +0.2
2,127,217 + MPMX20_02034 0.15 +0.1
2,127,228 + MPMX20_02034 0.21 -1.7
2,127,306 - MPMX20_02034 0.61 -0.2
2,127,311 - MPMX20_02034 0.63 -0.4
2,127,313 + MPMX20_02034 0.64 -4.0
2,127,313 + MPMX20_02034 0.64 +0.1
2,127,313 + MPMX20_02034 0.64 -0.9
2,127,329 + MPMX20_02034 0.72 -1.1
2,127,382 + +1.8
2,127,415 + -1.4
2,127,423 - -3.2
2,127,522 - +0.1
2,127,654 + MPMX20_02035 0.18 +0.3
2,127,654 + MPMX20_02035 0.18 +1.1
2,127,662 - MPMX20_02035 0.19 +0.1
2,127,662 - MPMX20_02035 0.19 -0.4
2,127,812 + MPMX20_02035 0.39 +1.6
2,127,820 - MPMX20_02035 0.40 +0.2
2,127,935 - MPMX20_02035 0.56 +1.6
2,127,948 + MPMX20_02035 0.57 -0.8
2,127,998 + MPMX20_02035 0.64 +1.8
2,128,006 - MPMX20_02035 0.65 +2.6
2,128,016 - MPMX20_02035 0.66 +2.1
2,128,028 - MPMX20_02035 0.68 +1.0
2,128,064 - MPMX20_02035 0.73 +2.6
2,128,064 - MPMX20_02035 0.73 -1.2
2,128,099 + MPMX20_02035 0.77 +5.5
2,128,126 - MPMX20_02035 0.81 +0.3
2,128,164 + MPMX20_02035 0.86 -0.4
2,128,172 - MPMX20_02035 0.87 +2.7
2,128,199 + +4.5
2,128,215 + -2.4
2,128,240 - +1.1
2,128,276 + +1.4
2,128,284 - -0.2
2,128,289 - +0.6
2,128,323 + -1.1
2,128,323 + -0.3
2,128,332 - -0.9
2,128,332 - +1.3
2,128,333 - -2.8
2,128,333 - -1.7
2,128,333 - +0.1
2,128,348 - +1.4
2,128,359 + -2.1
2,128,359 - +0.4
2,128,379 + +0.1
2,128,379 + +2.1

Or see this region's nucleotide sequence