Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01989

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01988 and MPMX20_01989 are separated by 149 nucleotidesMPMX20_01989 and MPMX20_01990 are separated by 48 nucleotides MPMX20_01988: MPMX20_01988 - Phosphoethanolamine transferase EptA, at 2,077,950 to 2,079,575 _01988 MPMX20_01989: MPMX20_01989 - hypothetical protein, at 2,079,725 to 2,079,964 _01989 MPMX20_01990: MPMX20_01990 - Oxidoreductase YdhF, at 2,080,013 to 2,080,909 _01990 Position (kb) 2079 2080Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2078.760 kb on + strand, within MPMX20_01988at 2078.763 kb on - strand, within MPMX20_01988at 2078.822 kb on - strand, within MPMX20_01988at 2079.058 kb on + strand, within MPMX20_01988at 2079.105 kb on - strand, within MPMX20_01988at 2079.160 kb on - strand, within MPMX20_01988at 2079.190 kb on - strand, within MPMX20_01988at 2079.225 kb on + strand, within MPMX20_01988at 2079.233 kb on - strand, within MPMX20_01988at 2079.238 kb on - strand, within MPMX20_01988at 2079.271 kb on + strand, within MPMX20_01988at 2079.345 kb on + strand, within MPMX20_01988at 2079.518 kb on + strandat 2079.525 kb on + strandat 2079.533 kb on - strandat 2079.550 kb on + strandat 2079.618 kb on - strandat 2079.644 kb on - strandat 2079.686 kb on - strandat 2079.721 kb on + strandat 2079.721 kb on + strandat 2079.750 kb on - strand, within MPMX20_01989at 2079.782 kb on - strand, within MPMX20_01989at 2079.845 kb on + strand, within MPMX20_01989at 2079.864 kb on + strand, within MPMX20_01989at 2079.975 kb on - strandat 2079.981 kb on + strandat 2079.992 kb on - strandat 2080.078 kb on - strandat 2080.078 kb on - strandat 2080.104 kb on + strand, within MPMX20_01990at 2080.141 kb on - strand, within MPMX20_01990at 2080.148 kb on - strand, within MPMX20_01990at 2080.189 kb on + strand, within MPMX20_01990at 2080.320 kb on + strand, within MPMX20_01990at 2080.328 kb on - strand, within MPMX20_01990at 2080.346 kb on - strand, within MPMX20_01990at 2080.348 kb on + strand, within MPMX20_01990at 2080.481 kb on + strand, within MPMX20_01990at 2080.518 kb on + strand, within MPMX20_01990at 2080.531 kb on - strand, within MPMX20_01990at 2080.531 kb on - strand, within MPMX20_01990at 2080.535 kb on + strand, within MPMX20_01990at 2080.560 kb on - strand, within MPMX20_01990at 2080.671 kb on - strand, within MPMX20_01990at 2080.739 kb on + strand, within MPMX20_01990at 2080.744 kb on + strand, within MPMX20_01990at 2080.891 kb on + strandat 2080.899 kb on - strandat 2080.899 kb on - strandat 2080.899 kb on - strandat 2080.937 kb on + strandat 2080.948 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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2,078,760 + MPMX20_01988 0.50 +4.6
2,078,763 - MPMX20_01988 0.50 +3.6
2,078,822 - MPMX20_01988 0.54 +0.2
2,079,058 + MPMX20_01988 0.68 -2.4
2,079,105 - MPMX20_01988 0.71 -1.3
2,079,160 - MPMX20_01988 0.74 -0.1
2,079,190 - MPMX20_01988 0.76 +1.1
2,079,225 + MPMX20_01988 0.78 +0.4
2,079,233 - MPMX20_01988 0.79 -1.4
2,079,238 - MPMX20_01988 0.79 -0.4
2,079,271 + MPMX20_01988 0.81 +0.3
2,079,345 + MPMX20_01988 0.86 -0.4
2,079,518 + +0.8
2,079,525 + +0.3
2,079,533 - +0.8
2,079,550 + +1.4
2,079,618 - +1.6
2,079,644 - -1.2
2,079,686 - +0.3
2,079,721 + +0.3
2,079,721 + +2.2
2,079,750 - MPMX20_01989 0.10 -0.1
2,079,782 - MPMX20_01989 0.24 -1.1
2,079,845 + MPMX20_01989 0.50 -2.1
2,079,864 + MPMX20_01989 0.58 -2.2
2,079,975 - -0.4
2,079,981 + +0.7
2,079,992 - +0.6
2,080,078 - +0.1
2,080,078 - -0.7
2,080,104 + MPMX20_01990 0.10 -0.7
2,080,141 - MPMX20_01990 0.14 -0.2
2,080,148 - MPMX20_01990 0.15 -1.2
2,080,189 + MPMX20_01990 0.20 +0.2
2,080,320 + MPMX20_01990 0.34 +0.4
2,080,328 - MPMX20_01990 0.35 -0.8
2,080,346 - MPMX20_01990 0.37 +1.8
2,080,348 + MPMX20_01990 0.37 -0.8
2,080,481 + MPMX20_01990 0.52 -1.5
2,080,518 + MPMX20_01990 0.56 -2.2
2,080,531 - MPMX20_01990 0.58 -0.2
2,080,531 - MPMX20_01990 0.58 -0.4
2,080,535 + MPMX20_01990 0.58 -0.2
2,080,560 - MPMX20_01990 0.61 +1.6
2,080,671 - MPMX20_01990 0.73 +0.6
2,080,739 + MPMX20_01990 0.81 -1.8
2,080,744 + MPMX20_01990 0.81 +1.5
2,080,891 + +0.2
2,080,899 - -0.4
2,080,899 - +2.2
2,080,899 - -2.2
2,080,937 + -0.3
2,080,948 + -0.3

Or see this region's nucleotide sequence