Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01951

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01949 and MPMX20_01950 are separated by 60 nucleotidesMPMX20_01950 and MPMX20_01951 are separated by 310 nucleotidesMPMX20_01951 and MPMX20_01952 are separated by 121 nucleotidesMPMX20_01952 and MPMX20_01953 are separated by 148 nucleotides MPMX20_01949: MPMX20_01949 - putative L,D-transpeptidase YnhG, at 2,044,864 to 2,045,877 _01949 MPMX20_01950: MPMX20_01950 - Major outer membrane lipoprotein Lpp 1, at 2,045,938 to 2,046,174 _01950 MPMX20_01951: MPMX20_01951 - Pyruvate kinase I, at 2,046,485 to 2,047,897 _01951 MPMX20_01952: MPMX20_01952 - hypothetical protein, at 2,048,019 to 2,048,126 _01952 MPMX20_01953: MPMX20_01953 - Cystathionine beta-lyase, at 2,048,275 to 2,049,420 _01953 Position (kb) 2046 2047 2048Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2045.575 kb on + strand, within MPMX20_01949at 2045.645 kb on - strand, within MPMX20_01949at 2045.678 kb on + strand, within MPMX20_01949at 2045.714 kb on - strand, within MPMX20_01949at 2045.722 kb on - strand, within MPMX20_01949at 2045.805 kb on - strandat 2045.818 kb on - strandat 2045.823 kb on - strandat 2045.858 kb on + strandat 2045.874 kb on + strandat 2045.880 kb on + strandat 2045.880 kb on + strandat 2045.955 kb on - strandat 2045.955 kb on - strandat 2046.003 kb on - strand, within MPMX20_01950at 2046.003 kb on - strand, within MPMX20_01950at 2046.126 kb on + strand, within MPMX20_01950at 2046.126 kb on + strand, within MPMX20_01950at 2046.126 kb on + strand, within MPMX20_01950at 2046.134 kb on - strand, within MPMX20_01950at 2046.136 kb on - strand, within MPMX20_01950at 2046.138 kb on + strand, within MPMX20_01950at 2046.146 kb on - strand, within MPMX20_01950at 2046.146 kb on - strand, within MPMX20_01950at 2046.146 kb on - strand, within MPMX20_01950at 2046.167 kb on - strandat 2046.184 kb on + strandat 2046.192 kb on - strandat 2046.194 kb on + strandat 2046.194 kb on + strandat 2046.197 kb on - strandat 2046.202 kb on - strandat 2046.202 kb on - strandat 2046.202 kb on - strandat 2046.202 kb on - strandat 2046.204 kb on + strandat 2046.220 kb on + strandat 2046.220 kb on + strandat 2046.220 kb on + strandat 2046.228 kb on - strandat 2046.228 kb on - strandat 2046.263 kb on + strandat 2046.263 kb on + strandat 2046.499 kb on - strandat 2046.501 kb on + strandat 2046.515 kb on - strandat 2046.515 kb on - strandat 2046.515 kb on - strandat 2046.572 kb on - strandat 2046.673 kb on + strand, within MPMX20_01951at 2046.868 kb on + strand, within MPMX20_01951at 2046.973 kb on - strand, within MPMX20_01951at 2046.973 kb on - strand, within MPMX20_01951at 2047.071 kb on - strand, within MPMX20_01951at 2047.079 kb on - strand, within MPMX20_01951at 2047.100 kb on - strand, within MPMX20_01951at 2047.222 kb on - strand, within MPMX20_01951at 2047.297 kb on - strand, within MPMX20_01951at 2047.308 kb on - strand, within MPMX20_01951at 2047.366 kb on + strand, within MPMX20_01951at 2047.369 kb on - strand, within MPMX20_01951at 2047.420 kb on + strand, within MPMX20_01951at 2047.428 kb on - strand, within MPMX20_01951at 2047.454 kb on + strand, within MPMX20_01951at 2047.498 kb on + strand, within MPMX20_01951at 2047.506 kb on - strand, within MPMX20_01951at 2047.526 kb on - strand, within MPMX20_01951at 2047.564 kb on + strand, within MPMX20_01951at 2047.572 kb on - strand, within MPMX20_01951at 2047.572 kb on - strand, within MPMX20_01951at 2047.615 kb on + strand, within MPMX20_01951at 2047.636 kb on - strand, within MPMX20_01951at 2047.728 kb on + strand, within MPMX20_01951at 2047.910 kb on - strandat 2047.940 kb on + strandat 2047.975 kb on - strandat 2047.985 kb on + strandat 2048.003 kb on + strandat 2048.003 kb on + strandat 2048.011 kb on - strandat 2048.011 kb on - strandat 2048.011 kb on - strandat 2048.074 kb on - strand, within MPMX20_01952at 2048.226 kb on + strandat 2048.227 kb on - strandat 2048.230 kb on + strandat 2048.238 kb on - strandat 2048.239 kb on - strandat 2048.387 kb on - strandat 2048.408 kb on + strand, within MPMX20_01953at 2048.408 kb on + strand, within MPMX20_01953at 2048.416 kb on - strand, within MPMX20_01953at 2048.416 kb on - strand, within MPMX20_01953at 2048.440 kb on + strand, within MPMX20_01953at 2048.448 kb on - strand, within MPMX20_01953at 2048.477 kb on + strand, within MPMX20_01953at 2048.479 kb on + strand, within MPMX20_01953at 2048.484 kb on + strand, within MPMX20_01953at 2048.540 kb on + strand, within MPMX20_01953at 2048.693 kb on - strand, within MPMX20_01953at 2048.700 kb on + strand, within MPMX20_01953at 2048.700 kb on + strand, within MPMX20_01953at 2048.700 kb on + strand, within MPMX20_01953at 2048.732 kb on - strand, within MPMX20_01953at 2048.785 kb on - strand, within MPMX20_01953at 2048.811 kb on + strand, within MPMX20_01953at 2048.845 kb on + strand, within MPMX20_01953at 2048.845 kb on + strand, within MPMX20_01953at 2048.853 kb on - strand, within MPMX20_01953at 2048.853 kb on - strand, within MPMX20_01953

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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2,045,575 + MPMX20_01949 0.70 -3.1
2,045,645 - MPMX20_01949 0.77 +1.9
2,045,678 + MPMX20_01949 0.80 +0.5
2,045,714 - MPMX20_01949 0.84 +0.5
2,045,722 - MPMX20_01949 0.85 +2.7
2,045,805 - -2.7
2,045,818 - -0.9
2,045,823 - +0.6
2,045,858 + +0.6
2,045,874 + -2.5
2,045,880 + -1.2
2,045,880 + -0.3
2,045,955 - -0.5
2,045,955 - -2.0
2,046,003 - MPMX20_01950 0.27 +0.1
2,046,003 - MPMX20_01950 0.27 -1.2
2,046,126 + MPMX20_01950 0.79 +0.7
2,046,126 + MPMX20_01950 0.79 -0.5
2,046,126 + MPMX20_01950 0.79 -0.5
2,046,134 - MPMX20_01950 0.83 -2.5
2,046,136 - MPMX20_01950 0.84 -1.3
2,046,138 + MPMX20_01950 0.84 +0.3
2,046,146 - MPMX20_01950 0.88 -1.0
2,046,146 - MPMX20_01950 0.88 -1.9
2,046,146 - MPMX20_01950 0.88 -2.1
2,046,167 - -2.6
2,046,184 + -0.3
2,046,192 - -2.9
2,046,194 + +0.1
2,046,194 + -2.7
2,046,197 - -2.5
2,046,202 - -4.4
2,046,202 - -3.6
2,046,202 - +0.7
2,046,202 - -2.7
2,046,204 + -2.2
2,046,220 + -1.9
2,046,220 + -1.6
2,046,220 + -1.7
2,046,228 - -1.5
2,046,228 - -1.8
2,046,263 + -0.4
2,046,263 + -0.8
2,046,499 - +0.7
2,046,501 + +0.8
2,046,515 - -2.5
2,046,515 - -2.1
2,046,515 - +0.1
2,046,572 - -1.2
2,046,673 + MPMX20_01951 0.13 -0.9
2,046,868 + MPMX20_01951 0.27 +0.1
2,046,973 - MPMX20_01951 0.35 -0.1
2,046,973 - MPMX20_01951 0.35 -1.0
2,047,071 - MPMX20_01951 0.41 -0.9
2,047,079 - MPMX20_01951 0.42 +0.1
2,047,100 - MPMX20_01951 0.44 -1.9
2,047,222 - MPMX20_01951 0.52 -1.3
2,047,297 - MPMX20_01951 0.57 -1.0
2,047,308 - MPMX20_01951 0.58 -1.0
2,047,366 + MPMX20_01951 0.62 +0.5
2,047,369 - MPMX20_01951 0.63 -2.2
2,047,420 + MPMX20_01951 0.66 -0.9
2,047,428 - MPMX20_01951 0.67 -0.1
2,047,454 + MPMX20_01951 0.69 -0.7
2,047,498 + MPMX20_01951 0.72 -0.2
2,047,506 - MPMX20_01951 0.72 -1.7
2,047,526 - MPMX20_01951 0.74 -1.5
2,047,564 + MPMX20_01951 0.76 +2.7
2,047,572 - MPMX20_01951 0.77 -0.7
2,047,572 - MPMX20_01951 0.77 -1.5
2,047,615 + MPMX20_01951 0.80 -1.6
2,047,636 - MPMX20_01951 0.81 -1.5
2,047,728 + MPMX20_01951 0.88 -0.6
2,047,910 - +0.1
2,047,940 + -1.4
2,047,975 - +0.9
2,047,985 + +1.7
2,048,003 + -0.5
2,048,003 + -2.4
2,048,011 - -3.2
2,048,011 - -0.6
2,048,011 - +0.4
2,048,074 - MPMX20_01952 0.51 +0.8
2,048,226 + -0.5
2,048,227 - +3.1
2,048,230 + -2.5
2,048,238 - +2.0
2,048,239 - +0.4
2,048,387 - +2.1
2,048,408 + MPMX20_01953 0.12 +0.3
2,048,408 + MPMX20_01953 0.12 +1.4
2,048,416 - MPMX20_01953 0.12 -0.8
2,048,416 - MPMX20_01953 0.12 +0.6
2,048,440 + MPMX20_01953 0.14 -0.6
2,048,448 - MPMX20_01953 0.15 -2.3
2,048,477 + MPMX20_01953 0.18 -3.5
2,048,479 + MPMX20_01953 0.18 -2.9
2,048,484 + MPMX20_01953 0.18 -0.8
2,048,540 + MPMX20_01953 0.23 -0.4
2,048,693 - MPMX20_01953 0.36 +0.6
2,048,700 + MPMX20_01953 0.37 -2.8
2,048,700 + MPMX20_01953 0.37 +0.1
2,048,700 + MPMX20_01953 0.37 +0.3
2,048,732 - MPMX20_01953 0.40 -2.5
2,048,785 - MPMX20_01953 0.45 +1.0
2,048,811 + MPMX20_01953 0.47 +1.1
2,048,845 + MPMX20_01953 0.50 +0.7
2,048,845 + MPMX20_01953 0.50 +0.2
2,048,853 - MPMX20_01953 0.50 -1.2
2,048,853 - MPMX20_01953 0.50 +0.2

Or see this region's nucleotide sequence