Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01918 and MPMX20_01919 are separated by 76 nucleotides MPMX20_01919 and MPMX20_01920 are separated by 166 nucleotides
MPMX20_01918: MPMX20_01918 - Hemin receptor, at 2,008,709 to 2,010,694
_01918
MPMX20_01919: MPMX20_01919 - putative protein YdiE, at 2,010,771 to 2,010,959
_01919
MPMX20_01920: MPMX20_01920 - Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive, at 2,011,126 to 2,012,172
_01920
Position (kb)
2010
2011 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2009.788 kb on + strand, within MPMX20_01918 at 2009.788 kb on + strand, within MPMX20_01918 at 2009.796 kb on - strand, within MPMX20_01918 at 2009.836 kb on + strand, within MPMX20_01918 at 2010.143 kb on - strand, within MPMX20_01918 at 2010.156 kb on - strand, within MPMX20_01918 at 2010.265 kb on - strand, within MPMX20_01918 at 2010.278 kb on + strand, within MPMX20_01918 at 2010.278 kb on + strand, within MPMX20_01918 at 2010.286 kb on - strand, within MPMX20_01918 at 2010.286 kb on - strand, within MPMX20_01918 at 2010.292 kb on - strand, within MPMX20_01918 at 2010.320 kb on - strand, within MPMX20_01918 at 2010.327 kb on + strand, within MPMX20_01918 at 2010.330 kb on - strand, within MPMX20_01918 at 2010.342 kb on + strand, within MPMX20_01918 at 2010.342 kb on + strand, within MPMX20_01918 at 2010.414 kb on - strand, within MPMX20_01918 at 2010.474 kb on - strand, within MPMX20_01918 at 2010.474 kb on - strand, within MPMX20_01918 at 2010.474 kb on - strand, within MPMX20_01918 at 2010.556 kb on - strand at 2010.564 kb on - strand at 2010.649 kb on + strand at 2010.739 kb on + strand at 2010.836 kb on - strand, within MPMX20_01919 at 2010.915 kb on - strand, within MPMX20_01919 at 2010.921 kb on - strand, within MPMX20_01919 at 2010.939 kb on + strand, within MPMX20_01919 at 2011.053 kb on + strand at 2011.086 kb on + strand at 2011.110 kb on + strand at 2011.110 kb on + strand at 2011.118 kb on - strand at 2011.178 kb on - strand at 2011.179 kb on + strand at 2011.186 kb on + strand at 2011.199 kb on - strand at 2011.210 kb on - strand at 2011.210 kb on - strand at 2011.213 kb on + strand at 2011.213 kb on + strand at 2011.220 kb on + strand at 2011.228 kb on - strand at 2011.229 kb on - strand at 2011.260 kb on + strand, within MPMX20_01920 at 2011.293 kb on + strand, within MPMX20_01920 at 2011.343 kb on - strand, within MPMX20_01920 at 2011.427 kb on - strand, within MPMX20_01920 at 2011.444 kb on - strand, within MPMX20_01920 at 2011.444 kb on - strand, within MPMX20_01920 at 2011.532 kb on + strand, within MPMX20_01920 at 2011.532 kb on + strand, within MPMX20_01920 at 2011.584 kb on - strand, within MPMX20_01920 at 2011.642 kb on + strand, within MPMX20_01920 at 2011.644 kb on - strand, within MPMX20_01920 at 2011.644 kb on - strand, within MPMX20_01920 at 2011.644 kb on - strand, within MPMX20_01920 at 2011.644 kb on - strand, within MPMX20_01920 at 2011.649 kb on - strand, within MPMX20_01920 at 2011.703 kb on - strand, within MPMX20_01920 at 2011.715 kb on + strand, within MPMX20_01920 at 2011.803 kb on + strand, within MPMX20_01920 at 2011.810 kb on - strand, within MPMX20_01920 at 2011.823 kb on - strand, within MPMX20_01920 at 2011.834 kb on + strand, within MPMX20_01920 at 2011.862 kb on + strand, within MPMX20_01920 at 2011.951 kb on - strand, within MPMX20_01920
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 2,009,788 + MPMX20_01918 0.54 -0.8 2,009,788 + MPMX20_01918 0.54 +0.1 2,009,796 - MPMX20_01918 0.55 -1.1 2,009,836 + MPMX20_01918 0.57 +1.1 2,010,143 - MPMX20_01918 0.72 +1.2 2,010,156 - MPMX20_01918 0.73 -1.9 2,010,265 - MPMX20_01918 0.78 -0.4 2,010,278 + MPMX20_01918 0.79 -0.7 2,010,278 + MPMX20_01918 0.79 +0.3 2,010,286 - MPMX20_01918 0.79 +0.3 2,010,286 - MPMX20_01918 0.79 +1.2 2,010,292 - MPMX20_01918 0.80 +0.2 2,010,320 - MPMX20_01918 0.81 -1.2 2,010,327 + MPMX20_01918 0.81 -0.3 2,010,330 - MPMX20_01918 0.82 -0.6 2,010,342 + MPMX20_01918 0.82 +0.3 2,010,342 + MPMX20_01918 0.82 +2.7 2,010,414 - MPMX20_01918 0.86 +0.1 2,010,474 - MPMX20_01918 0.89 -3.4 2,010,474 - MPMX20_01918 0.89 +0.0 2,010,474 - MPMX20_01918 0.89 +0.3 2,010,556 - -0.5 2,010,564 - +1.3 2,010,649 + -0.8 2,010,739 + -2.7 2,010,836 - MPMX20_01919 0.34 -0.3 2,010,915 - MPMX20_01919 0.76 -1.4 2,010,921 - MPMX20_01919 0.79 -0.7 2,010,939 + MPMX20_01919 0.89 -1.7 2,011,053 + -0.3 2,011,086 + -1.1 2,011,110 + -2.1 2,011,110 + +0.8 2,011,118 - -0.4 2,011,178 - -2.0 2,011,179 + -0.3 2,011,186 + -0.2 2,011,199 - +2.3 2,011,210 - -0.3 2,011,210 - +0.2 2,011,213 + -0.2 2,011,213 + -0.3 2,011,220 + -2.1 2,011,228 - -1.2 2,011,229 - +1.1 2,011,260 + MPMX20_01920 0.13 +1.7 2,011,293 + MPMX20_01920 0.16 -2.5 2,011,343 - MPMX20_01920 0.21 +0.7 2,011,427 - MPMX20_01920 0.29 -1.7 2,011,444 - MPMX20_01920 0.30 -0.8 2,011,444 - MPMX20_01920 0.30 +1.0 2,011,532 + MPMX20_01920 0.39 +1.1 2,011,532 + MPMX20_01920 0.39 -0.1 2,011,584 - MPMX20_01920 0.44 -1.8 2,011,642 + MPMX20_01920 0.49 +2.2 2,011,644 - MPMX20_01920 0.49 +1.1 2,011,644 - MPMX20_01920 0.49 -1.8 2,011,644 - MPMX20_01920 0.49 -2.1 2,011,644 - MPMX20_01920 0.49 -0.7 2,011,649 - MPMX20_01920 0.50 -0.2 2,011,703 - MPMX20_01920 0.55 -0.9 2,011,715 + MPMX20_01920 0.56 -0.4 2,011,803 + MPMX20_01920 0.65 -2.1 2,011,810 - MPMX20_01920 0.65 -0.2 2,011,823 - MPMX20_01920 0.67 -1.4 2,011,834 + MPMX20_01920 0.68 -0.5 2,011,862 + MPMX20_01920 0.70 -3.1 2,011,951 - MPMX20_01920 0.79 -1.9
Or see this region's nucleotide sequence