Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01865

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01864 and MPMX20_01865 are separated by 433 nucleotidesMPMX20_01865 and MPMX20_01866 overlap by 4 nucleotides MPMX20_01864: MPMX20_01864 - Exodeoxyribonuclease III, at 1,957,681 to 1,958,487 _01864 MPMX20_01865: MPMX20_01865 - Succinylornithine transaminase, at 1,958,921 to 1,960,141 _01865 MPMX20_01866: MPMX20_01866 - Arginine N-succinyltransferase, at 1,960,138 to 1,961,172 _01866 Position (kb) 1958 1959 1960 1961Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1957.952 kb on + strand, within MPMX20_01864at 1957.995 kb on + strand, within MPMX20_01864at 1958.035 kb on - strand, within MPMX20_01864at 1958.143 kb on + strand, within MPMX20_01864at 1958.151 kb on - strand, within MPMX20_01864at 1958.151 kb on - strand, within MPMX20_01864at 1958.154 kb on + strand, within MPMX20_01864at 1958.289 kb on - strand, within MPMX20_01864at 1958.302 kb on - strand, within MPMX20_01864at 1958.307 kb on - strand, within MPMX20_01864at 1958.330 kb on + strand, within MPMX20_01864at 1958.338 kb on - strand, within MPMX20_01864at 1958.352 kb on + strand, within MPMX20_01864at 1958.367 kb on - strand, within MPMX20_01864at 1958.370 kb on - strand, within MPMX20_01864at 1958.370 kb on - strand, within MPMX20_01864at 1958.388 kb on + strand, within MPMX20_01864at 1958.388 kb on + strand, within MPMX20_01864at 1958.398 kb on + strand, within MPMX20_01864at 1958.408 kb on + strandat 1958.429 kb on + strandat 1958.523 kb on - strandat 1958.543 kb on + strandat 1958.545 kb on + strandat 1958.551 kb on - strandat 1958.553 kb on - strandat 1958.553 kb on - strandat 1958.603 kb on + strandat 1958.618 kb on + strandat 1958.618 kb on + strandat 1958.627 kb on - strandat 1958.639 kb on - strandat 1958.808 kb on - strandat 1958.843 kb on + strandat 1959.009 kb on + strandat 1959.009 kb on + strandat 1959.009 kb on + strandat 1959.009 kb on + strandat 1959.009 kb on + strandat 1959.017 kb on - strandat 1959.017 kb on - strandat 1959.023 kb on + strandat 1959.087 kb on - strand, within MPMX20_01865at 1959.089 kb on + strand, within MPMX20_01865at 1959.089 kb on + strand, within MPMX20_01865at 1959.089 kb on - strand, within MPMX20_01865at 1959.091 kb on + strand, within MPMX20_01865at 1959.103 kb on - strand, within MPMX20_01865at 1959.108 kb on - strand, within MPMX20_01865at 1959.167 kb on + strand, within MPMX20_01865at 1959.167 kb on + strand, within MPMX20_01865at 1959.195 kb on + strand, within MPMX20_01865at 1959.254 kb on + strand, within MPMX20_01865at 1959.254 kb on + strand, within MPMX20_01865at 1959.262 kb on - strand, within MPMX20_01865at 1959.262 kb on - strand, within MPMX20_01865at 1959.309 kb on + strand, within MPMX20_01865at 1959.309 kb on + strand, within MPMX20_01865at 1959.312 kb on - strand, within MPMX20_01865at 1959.317 kb on - strand, within MPMX20_01865at 1959.476 kb on - strand, within MPMX20_01865at 1959.497 kb on - strand, within MPMX20_01865at 1959.499 kb on + strand, within MPMX20_01865at 1959.499 kb on + strand, within MPMX20_01865at 1959.502 kb on - strand, within MPMX20_01865at 1959.593 kb on + strand, within MPMX20_01865at 1959.593 kb on + strand, within MPMX20_01865at 1959.593 kb on + strand, within MPMX20_01865at 1959.630 kb on - strand, within MPMX20_01865at 1959.645 kb on + strand, within MPMX20_01865at 1959.702 kb on + strand, within MPMX20_01865at 1959.710 kb on - strand, within MPMX20_01865at 1959.710 kb on - strand, within MPMX20_01865at 1959.756 kb on + strand, within MPMX20_01865at 1959.756 kb on + strand, within MPMX20_01865at 1959.763 kb on + strand, within MPMX20_01865at 1959.764 kb on - strand, within MPMX20_01865at 1959.768 kb on + strand, within MPMX20_01865at 1959.776 kb on - strand, within MPMX20_01865at 1959.830 kb on + strand, within MPMX20_01865at 1959.832 kb on + strand, within MPMX20_01865at 1959.832 kb on + strand, within MPMX20_01865at 1959.832 kb on + strand, within MPMX20_01865at 1959.840 kb on - strand, within MPMX20_01865at 1959.848 kb on - strand, within MPMX20_01865at 1959.859 kb on - strand, within MPMX20_01865at 1959.882 kb on - strand, within MPMX20_01865at 1959.882 kb on - strand, within MPMX20_01865at 1959.904 kb on + strand, within MPMX20_01865at 1959.904 kb on + strand, within MPMX20_01865at 1959.912 kb on - strand, within MPMX20_01865at 1959.913 kb on + strand, within MPMX20_01865at 1960.093 kb on - strandat 1960.095 kb on + strandat 1960.100 kb on + strandat 1960.110 kb on + strandat 1960.113 kb on - strandat 1960.118 kb on - strandat 1960.208 kb on - strandat 1960.275 kb on - strand, within MPMX20_01866at 1960.398 kb on - strand, within MPMX20_01866at 1960.427 kb on + strand, within MPMX20_01866at 1960.435 kb on - strand, within MPMX20_01866at 1960.515 kb on + strand, within MPMX20_01866at 1960.882 kb on - strand, within MPMX20_01866at 1960.909 kb on + strand, within MPMX20_01866at 1960.917 kb on - strand, within MPMX20_01866

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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1,957,952 + MPMX20_01864 0.34 -2.4
1,957,995 + MPMX20_01864 0.39 -0.5
1,958,035 - MPMX20_01864 0.44 +1.7
1,958,143 + MPMX20_01864 0.57 -0.2
1,958,151 - MPMX20_01864 0.58 +1.1
1,958,151 - MPMX20_01864 0.58 -0.4
1,958,154 + MPMX20_01864 0.59 -1.5
1,958,289 - MPMX20_01864 0.75 +1.5
1,958,302 - MPMX20_01864 0.77 -2.3
1,958,307 - MPMX20_01864 0.78 -0.3
1,958,330 + MPMX20_01864 0.80 -0.2
1,958,338 - MPMX20_01864 0.81 +2.6
1,958,352 + MPMX20_01864 0.83 +5.2
1,958,367 - MPMX20_01864 0.85 -0.5
1,958,370 - MPMX20_01864 0.85 +1.0
1,958,370 - MPMX20_01864 0.85 +0.3
1,958,388 + MPMX20_01864 0.88 -0.5
1,958,388 + MPMX20_01864 0.88 +1.2
1,958,398 + MPMX20_01864 0.89 -0.2
1,958,408 + +0.8
1,958,429 + -2.6
1,958,523 - +2.7
1,958,543 + -1.1
1,958,545 + -2.9
1,958,551 - -0.2
1,958,553 - +0.3
1,958,553 - +0.0
1,958,603 + +0.3
1,958,618 + -0.2
1,958,618 + +1.6
1,958,627 - -2.5
1,958,639 - -0.6
1,958,808 - -1.5
1,958,843 + -1.2
1,959,009 + -1.9
1,959,009 + -0.4
1,959,009 + -3.2
1,959,009 + -2.1
1,959,009 + -2.8
1,959,017 - -2.2
1,959,017 - +0.0
1,959,023 + -1.6
1,959,087 - MPMX20_01865 0.14 -1.5
1,959,089 + MPMX20_01865 0.14 -3.1
1,959,089 + MPMX20_01865 0.14 -3.2
1,959,089 - MPMX20_01865 0.14 -3.7
1,959,091 + MPMX20_01865 0.14 -3.3
1,959,103 - MPMX20_01865 0.15 -1.3
1,959,108 - MPMX20_01865 0.15 -2.9
1,959,167 + MPMX20_01865 0.20 -0.1
1,959,167 + MPMX20_01865 0.20 -1.6
1,959,195 + MPMX20_01865 0.22 -1.2
1,959,254 + MPMX20_01865 0.27 -2.1
1,959,254 + MPMX20_01865 0.27 -3.0
1,959,262 - MPMX20_01865 0.28 -2.1
1,959,262 - MPMX20_01865 0.28 -1.5
1,959,309 + MPMX20_01865 0.32 -2.7
1,959,309 + MPMX20_01865 0.32 -2.4
1,959,312 - MPMX20_01865 0.32 -2.9
1,959,317 - MPMX20_01865 0.32 +1.0
1,959,476 - MPMX20_01865 0.45 -1.2
1,959,497 - MPMX20_01865 0.47 -1.6
1,959,499 + MPMX20_01865 0.47 -0.7
1,959,499 + MPMX20_01865 0.47 -1.2
1,959,502 - MPMX20_01865 0.48 +2.1
1,959,593 + MPMX20_01865 0.55 -2.1
1,959,593 + MPMX20_01865 0.55 +0.6
1,959,593 + MPMX20_01865 0.55 -0.7
1,959,630 - MPMX20_01865 0.58 +0.4
1,959,645 + MPMX20_01865 0.59 +0.0
1,959,702 + MPMX20_01865 0.64 -1.2
1,959,710 - MPMX20_01865 0.65 -1.7
1,959,710 - MPMX20_01865 0.65 -0.6
1,959,756 + MPMX20_01865 0.68 -0.2
1,959,756 + MPMX20_01865 0.68 -1.8
1,959,763 + MPMX20_01865 0.69 -3.9
1,959,764 - MPMX20_01865 0.69 +2.5
1,959,768 + MPMX20_01865 0.69 -2.3
1,959,776 - MPMX20_01865 0.70 -2.7
1,959,830 + MPMX20_01865 0.74 -3.1
1,959,832 + MPMX20_01865 0.75 -0.4
1,959,832 + MPMX20_01865 0.75 -2.4
1,959,832 + MPMX20_01865 0.75 -1.0
1,959,840 - MPMX20_01865 0.75 +1.0
1,959,848 - MPMX20_01865 0.76 -2.1
1,959,859 - MPMX20_01865 0.77 -2.7
1,959,882 - MPMX20_01865 0.79 +0.6
1,959,882 - MPMX20_01865 0.79 -1.1
1,959,904 + MPMX20_01865 0.81 -1.2
1,959,904 + MPMX20_01865 0.81 +0.2
1,959,912 - MPMX20_01865 0.81 +2.6
1,959,913 + MPMX20_01865 0.81 -2.5
1,960,093 - -3.8
1,960,095 + +0.3
1,960,100 + +1.6
1,960,110 + -2.3
1,960,113 - -1.3
1,960,118 - +0.6
1,960,208 - -3.1
1,960,275 - MPMX20_01866 0.13 -1.8
1,960,398 - MPMX20_01866 0.25 -2.0
1,960,427 + MPMX20_01866 0.28 -0.5
1,960,435 - MPMX20_01866 0.29 +1.0
1,960,515 + MPMX20_01866 0.36 +0.0
1,960,882 - MPMX20_01866 0.72 -1.6
1,960,909 + MPMX20_01866 0.74 -1.6
1,960,917 - MPMX20_01866 0.75 -0.8

Or see this region's nucleotide sequence