Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01864 and MPMX20_01865 are separated by 433 nucleotides MPMX20_01865 and MPMX20_01866 overlap by 4 nucleotides
MPMX20_01864: MPMX20_01864 - Exodeoxyribonuclease III, at 1,957,681 to 1,958,487
_01864
MPMX20_01865: MPMX20_01865 - Succinylornithine transaminase, at 1,958,921 to 1,960,141
_01865
MPMX20_01866: MPMX20_01866 - Arginine N-succinyltransferase, at 1,960,138 to 1,961,172
_01866
Position (kb)
1958
1959
1960
1961 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 1957.952 kb on + strand, within MPMX20_01864 at 1957.995 kb on + strand, within MPMX20_01864 at 1958.035 kb on - strand, within MPMX20_01864 at 1958.143 kb on + strand, within MPMX20_01864 at 1958.151 kb on - strand, within MPMX20_01864 at 1958.151 kb on - strand, within MPMX20_01864 at 1958.154 kb on + strand, within MPMX20_01864 at 1958.289 kb on - strand, within MPMX20_01864 at 1958.302 kb on - strand, within MPMX20_01864 at 1958.307 kb on - strand, within MPMX20_01864 at 1958.330 kb on + strand, within MPMX20_01864 at 1958.338 kb on - strand, within MPMX20_01864 at 1958.352 kb on + strand, within MPMX20_01864 at 1958.367 kb on - strand, within MPMX20_01864 at 1958.370 kb on - strand, within MPMX20_01864 at 1958.370 kb on - strand, within MPMX20_01864 at 1958.388 kb on + strand, within MPMX20_01864 at 1958.388 kb on + strand, within MPMX20_01864 at 1958.398 kb on + strand, within MPMX20_01864 at 1958.408 kb on + strand at 1958.429 kb on + strand at 1958.523 kb on - strand at 1958.543 kb on + strand at 1958.545 kb on + strand at 1958.551 kb on - strand at 1958.553 kb on - strand at 1958.553 kb on - strand at 1958.603 kb on + strand at 1958.618 kb on + strand at 1958.618 kb on + strand at 1958.627 kb on - strand at 1958.639 kb on - strand at 1958.808 kb on - strand at 1958.843 kb on + strand at 1959.009 kb on + strand at 1959.009 kb on + strand at 1959.009 kb on + strand at 1959.009 kb on + strand at 1959.009 kb on + strand at 1959.017 kb on - strand at 1959.017 kb on - strand at 1959.023 kb on + strand at 1959.087 kb on - strand, within MPMX20_01865 at 1959.089 kb on + strand, within MPMX20_01865 at 1959.089 kb on + strand, within MPMX20_01865 at 1959.089 kb on - strand, within MPMX20_01865 at 1959.091 kb on + strand, within MPMX20_01865 at 1959.103 kb on - strand, within MPMX20_01865 at 1959.108 kb on - strand, within MPMX20_01865 at 1959.167 kb on + strand, within MPMX20_01865 at 1959.167 kb on + strand, within MPMX20_01865 at 1959.195 kb on + strand, within MPMX20_01865 at 1959.254 kb on + strand, within MPMX20_01865 at 1959.254 kb on + strand, within MPMX20_01865 at 1959.262 kb on - strand, within MPMX20_01865 at 1959.262 kb on - strand, within MPMX20_01865 at 1959.309 kb on + strand, within MPMX20_01865 at 1959.309 kb on + strand, within MPMX20_01865 at 1959.312 kb on - strand, within MPMX20_01865 at 1959.317 kb on - strand, within MPMX20_01865 at 1959.476 kb on - strand, within MPMX20_01865 at 1959.497 kb on - strand, within MPMX20_01865 at 1959.499 kb on + strand, within MPMX20_01865 at 1959.499 kb on + strand, within MPMX20_01865 at 1959.502 kb on - strand, within MPMX20_01865 at 1959.593 kb on + strand, within MPMX20_01865 at 1959.593 kb on + strand, within MPMX20_01865 at 1959.593 kb on + strand, within MPMX20_01865 at 1959.630 kb on - strand, within MPMX20_01865 at 1959.645 kb on + strand, within MPMX20_01865 at 1959.702 kb on + strand, within MPMX20_01865 at 1959.710 kb on - strand, within MPMX20_01865 at 1959.710 kb on - strand, within MPMX20_01865 at 1959.756 kb on + strand, within MPMX20_01865 at 1959.756 kb on + strand, within MPMX20_01865 at 1959.763 kb on + strand, within MPMX20_01865 at 1959.764 kb on - strand, within MPMX20_01865 at 1959.768 kb on + strand, within MPMX20_01865 at 1959.776 kb on - strand, within MPMX20_01865 at 1959.830 kb on + strand, within MPMX20_01865 at 1959.832 kb on + strand, within MPMX20_01865 at 1959.832 kb on + strand, within MPMX20_01865 at 1959.832 kb on + strand, within MPMX20_01865 at 1959.840 kb on - strand, within MPMX20_01865 at 1959.848 kb on - strand, within MPMX20_01865 at 1959.859 kb on - strand, within MPMX20_01865 at 1959.882 kb on - strand, within MPMX20_01865 at 1959.882 kb on - strand, within MPMX20_01865 at 1959.904 kb on + strand, within MPMX20_01865 at 1959.904 kb on + strand, within MPMX20_01865 at 1959.912 kb on - strand, within MPMX20_01865 at 1959.913 kb on + strand, within MPMX20_01865 at 1960.093 kb on - strand at 1960.095 kb on + strand at 1960.100 kb on + strand at 1960.110 kb on + strand at 1960.113 kb on - strand at 1960.118 kb on - strand at 1960.208 kb on - strand at 1960.275 kb on - strand, within MPMX20_01866 at 1960.398 kb on - strand, within MPMX20_01866 at 1960.427 kb on + strand, within MPMX20_01866 at 1960.435 kb on - strand, within MPMX20_01866 at 1960.515 kb on + strand, within MPMX20_01866 at 1960.882 kb on - strand, within MPMX20_01866 at 1960.909 kb on + strand, within MPMX20_01866 at 1960.917 kb on - strand, within MPMX20_01866
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 1,957,952 + MPMX20_01864 0.34 -2.4 1,957,995 + MPMX20_01864 0.39 -0.5 1,958,035 - MPMX20_01864 0.44 +1.7 1,958,143 + MPMX20_01864 0.57 -0.2 1,958,151 - MPMX20_01864 0.58 +1.1 1,958,151 - MPMX20_01864 0.58 -0.4 1,958,154 + MPMX20_01864 0.59 -1.5 1,958,289 - MPMX20_01864 0.75 +1.5 1,958,302 - MPMX20_01864 0.77 -2.3 1,958,307 - MPMX20_01864 0.78 -0.3 1,958,330 + MPMX20_01864 0.80 -0.2 1,958,338 - MPMX20_01864 0.81 +2.6 1,958,352 + MPMX20_01864 0.83 +5.2 1,958,367 - MPMX20_01864 0.85 -0.5 1,958,370 - MPMX20_01864 0.85 +1.0 1,958,370 - MPMX20_01864 0.85 +0.3 1,958,388 + MPMX20_01864 0.88 -0.5 1,958,388 + MPMX20_01864 0.88 +1.2 1,958,398 + MPMX20_01864 0.89 -0.2 1,958,408 + +0.8 1,958,429 + -2.6 1,958,523 - +2.7 1,958,543 + -1.1 1,958,545 + -2.9 1,958,551 - -0.2 1,958,553 - +0.3 1,958,553 - +0.0 1,958,603 + +0.3 1,958,618 + -0.2 1,958,618 + +1.6 1,958,627 - -2.5 1,958,639 - -0.6 1,958,808 - -1.5 1,958,843 + -1.2 1,959,009 + -1.9 1,959,009 + -0.4 1,959,009 + -3.2 1,959,009 + -2.1 1,959,009 + -2.8 1,959,017 - -2.2 1,959,017 - +0.0 1,959,023 + -1.6 1,959,087 - MPMX20_01865 0.14 -1.5 1,959,089 + MPMX20_01865 0.14 -3.1 1,959,089 + MPMX20_01865 0.14 -3.2 1,959,089 - MPMX20_01865 0.14 -3.7 1,959,091 + MPMX20_01865 0.14 -3.3 1,959,103 - MPMX20_01865 0.15 -1.3 1,959,108 - MPMX20_01865 0.15 -2.9 1,959,167 + MPMX20_01865 0.20 -0.1 1,959,167 + MPMX20_01865 0.20 -1.6 1,959,195 + MPMX20_01865 0.22 -1.2 1,959,254 + MPMX20_01865 0.27 -2.1 1,959,254 + MPMX20_01865 0.27 -3.0 1,959,262 - MPMX20_01865 0.28 -2.1 1,959,262 - MPMX20_01865 0.28 -1.5 1,959,309 + MPMX20_01865 0.32 -2.7 1,959,309 + MPMX20_01865 0.32 -2.4 1,959,312 - MPMX20_01865 0.32 -2.9 1,959,317 - MPMX20_01865 0.32 +1.0 1,959,476 - MPMX20_01865 0.45 -1.2 1,959,497 - MPMX20_01865 0.47 -1.6 1,959,499 + MPMX20_01865 0.47 -0.7 1,959,499 + MPMX20_01865 0.47 -1.2 1,959,502 - MPMX20_01865 0.48 +2.1 1,959,593 + MPMX20_01865 0.55 -2.1 1,959,593 + MPMX20_01865 0.55 +0.6 1,959,593 + MPMX20_01865 0.55 -0.7 1,959,630 - MPMX20_01865 0.58 +0.4 1,959,645 + MPMX20_01865 0.59 +0.0 1,959,702 + MPMX20_01865 0.64 -1.2 1,959,710 - MPMX20_01865 0.65 -1.7 1,959,710 - MPMX20_01865 0.65 -0.6 1,959,756 + MPMX20_01865 0.68 -0.2 1,959,756 + MPMX20_01865 0.68 -1.8 1,959,763 + MPMX20_01865 0.69 -3.9 1,959,764 - MPMX20_01865 0.69 +2.5 1,959,768 + MPMX20_01865 0.69 -2.3 1,959,776 - MPMX20_01865 0.70 -2.7 1,959,830 + MPMX20_01865 0.74 -3.1 1,959,832 + MPMX20_01865 0.75 -0.4 1,959,832 + MPMX20_01865 0.75 -2.4 1,959,832 + MPMX20_01865 0.75 -1.0 1,959,840 - MPMX20_01865 0.75 +1.0 1,959,848 - MPMX20_01865 0.76 -2.1 1,959,859 - MPMX20_01865 0.77 -2.7 1,959,882 - MPMX20_01865 0.79 +0.6 1,959,882 - MPMX20_01865 0.79 -1.1 1,959,904 + MPMX20_01865 0.81 -1.2 1,959,904 + MPMX20_01865 0.81 +0.2 1,959,912 - MPMX20_01865 0.81 +2.6 1,959,913 + MPMX20_01865 0.81 -2.5 1,960,093 - -3.8 1,960,095 + +0.3 1,960,100 + +1.6 1,960,110 + -2.3 1,960,113 - -1.3 1,960,118 - +0.6 1,960,208 - -3.1 1,960,275 - MPMX20_01866 0.13 -1.8 1,960,398 - MPMX20_01866 0.25 -2.0 1,960,427 + MPMX20_01866 0.28 -0.5 1,960,435 - MPMX20_01866 0.29 +1.0 1,960,515 + MPMX20_01866 0.36 +0.0 1,960,882 - MPMX20_01866 0.72 -1.6 1,960,909 + MPMX20_01866 0.74 -1.6 1,960,917 - MPMX20_01866 0.75 -0.8
Or see this region's nucleotide sequence