Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01765 and MPMX20_01766 are separated by 598 nucleotides MPMX20_01766 and MPMX20_01767 are separated by 63 nucleotides MPMX20_01767 and MPMX20_01768 are separated by 140 nucleotides
MPMX20_01765: MPMX20_01765 - Ribonuclease E, at 1,856,618 to 1,859,743
_01765
MPMX20_01766: MPMX20_01766 - Ribosomal large subunit pseudouridine synthase C, at 1,860,342 to 1,861,262
_01766
MPMX20_01767: MPMX20_01767 - 7-methyl-GTP pyrophosphatase, at 1,861,326 to 1,861,910
_01767
MPMX20_01768: MPMX20_01768 - Large ribosomal RNA subunit accumulation protein YceD, at 1,862,051 to 1,862,572
_01768
Position (kb)
1860
1861
1862 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1859.813 kb on - strand at 1859.845 kb on - strand at 1859.851 kb on - strand at 1859.852 kb on - strand at 1859.852 kb on - strand at 1859.852 kb on - strand at 1859.852 kb on - strand at 1859.908 kb on - strand at 1859.942 kb on - strand at 1859.942 kb on - strand at 1859.942 kb on - strand at 1859.942 kb on - strand at 1859.942 kb on - strand at 1859.965 kb on - strand at 1859.965 kb on - strand at 1860.024 kb on - strand at 1860.185 kb on + strand at 1860.185 kb on + strand at 1860.225 kb on + strand at 1860.232 kb on + strand at 1860.326 kb on + strand at 1860.377 kb on - strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.409 kb on - strand at 1860.409 kb on - strand at 1860.409 kb on - strand at 1860.409 kb on - strand at 1860.409 kb on - strand at 1860.409 kb on - strand at 1860.447 kb on + strand, within MPMX20_01766 at 1860.447 kb on + strand, within MPMX20_01766 at 1860.500 kb on - strand, within MPMX20_01766 at 1860.502 kb on + strand, within MPMX20_01766 at 1860.592 kb on + strand, within MPMX20_01766 at 1860.621 kb on - strand, within MPMX20_01766 at 1860.654 kb on - strand, within MPMX20_01766 at 1860.659 kb on - strand, within MPMX20_01766 at 1860.681 kb on - strand, within MPMX20_01766 at 1860.681 kb on - strand, within MPMX20_01766 at 1860.731 kb on + strand, within MPMX20_01766 at 1860.762 kb on - strand, within MPMX20_01766 at 1860.797 kb on - strand, within MPMX20_01766 at 1860.836 kb on - strand, within MPMX20_01766 at 1860.875 kb on + strand, within MPMX20_01766 at 1860.875 kb on + strand, within MPMX20_01766 at 1860.883 kb on - strand, within MPMX20_01766 at 1860.883 kb on - strand, within MPMX20_01766 at 1860.883 kb on - strand, within MPMX20_01766 at 1860.883 kb on - strand, within MPMX20_01766 at 1860.887 kb on + strand, within MPMX20_01766 at 1860.927 kb on - strand, within MPMX20_01766 at 1860.933 kb on + strand, within MPMX20_01766 at 1860.986 kb on + strand, within MPMX20_01766 at 1861.103 kb on + strand, within MPMX20_01766 at 1861.179 kb on + strand at 1861.181 kb on + strand at 1861.280 kb on + strand at 1861.325 kb on - strand at 1861.339 kb on + strand at 1861.339 kb on + strand at 1861.357 kb on - strand at 1861.411 kb on + strand, within MPMX20_01767 at 1861.414 kb on - strand, within MPMX20_01767 at 1861.433 kb on + strand, within MPMX20_01767 at 1861.448 kb on - strand, within MPMX20_01767 at 1861.448 kb on - strand, within MPMX20_01767 at 1861.448 kb on - strand, within MPMX20_01767 at 1861.517 kb on + strand, within MPMX20_01767 at 1861.547 kb on - strand, within MPMX20_01767 at 1861.581 kb on + strand, within MPMX20_01767 at 1861.587 kb on - strand, within MPMX20_01767 at 1861.589 kb on - strand, within MPMX20_01767 at 1861.589 kb on - strand, within MPMX20_01767 at 1861.589 kb on - strand, within MPMX20_01767 at 1861.638 kb on - strand, within MPMX20_01767 at 1861.711 kb on - strand, within MPMX20_01767 at 1861.729 kb on + strand, within MPMX20_01767 at 1861.784 kb on - strand, within MPMX20_01767 at 1861.877 kb on + strand at 1861.878 kb on + strand at 1861.878 kb on + strand at 1861.878 kb on + strand at 1861.879 kb on + strand at 1861.924 kb on + strand at 1861.989 kb on + strand at 1862.096 kb on + strand at 1862.140 kb on + strand, within MPMX20_01768 at 1862.168 kb on + strand, within MPMX20_01768 at 1862.178 kb on + strand, within MPMX20_01768 at 1862.180 kb on + strand, within MPMX20_01768 at 1862.190 kb on + strand, within MPMX20_01768 at 1862.260 kb on + strand, within MPMX20_01768
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 1,859,813 - -1.0 1,859,845 - +0.1 1,859,851 - -1.4 1,859,852 - -0.4 1,859,852 - -1.9 1,859,852 - -2.0 1,859,852 - +0.2 1,859,908 - -0.9 1,859,942 - +0.0 1,859,942 - +0.0 1,859,942 - +0.0 1,859,942 - +1.0 1,859,942 - +2.9 1,859,965 - +1.7 1,859,965 - +1.3 1,860,024 - +0.3 1,860,185 + -1.6 1,860,185 + -0.8 1,860,225 + -3.3 1,860,232 + -2.5 1,860,326 + +0.3 1,860,377 - +0.0 1,860,401 + +0.5 1,860,401 + -2.7 1,860,401 + -2.6 1,860,401 + -3.6 1,860,401 + -0.8 1,860,401 + +1.6 1,860,401 + -1.2 1,860,401 + -1.9 1,860,409 - +1.5 1,860,409 - -0.7 1,860,409 - +0.3 1,860,409 - -2.3 1,860,409 - -1.0 1,860,409 - -1.7 1,860,447 + MPMX20_01766 0.11 -0.1 1,860,447 + MPMX20_01766 0.11 -0.1 1,860,500 - MPMX20_01766 0.17 -1.0 1,860,502 + MPMX20_01766 0.17 -0.4 1,860,592 + MPMX20_01766 0.27 +0.1 1,860,621 - MPMX20_01766 0.30 -1.7 1,860,654 - MPMX20_01766 0.34 -1.3 1,860,659 - MPMX20_01766 0.34 -1.9 1,860,681 - MPMX20_01766 0.37 -2.5 1,860,681 - MPMX20_01766 0.37 -3.3 1,860,731 + MPMX20_01766 0.42 -0.5 1,860,762 - MPMX20_01766 0.46 -2.1 1,860,797 - MPMX20_01766 0.49 +2.2 1,860,836 - MPMX20_01766 0.54 +1.9 1,860,875 + MPMX20_01766 0.58 -2.0 1,860,875 + MPMX20_01766 0.58 +0.0 1,860,883 - MPMX20_01766 0.59 +0.5 1,860,883 - MPMX20_01766 0.59 -0.6 1,860,883 - MPMX20_01766 0.59 -1.0 1,860,883 - MPMX20_01766 0.59 -1.0 1,860,887 + MPMX20_01766 0.59 -2.9 1,860,927 - MPMX20_01766 0.64 -2.0 1,860,933 + MPMX20_01766 0.64 +1.0 1,860,986 + MPMX20_01766 0.70 +1.0 1,861,103 + MPMX20_01766 0.83 +1.0 1,861,179 + -1.7 1,861,181 + +1.1 1,861,280 + +0.3 1,861,325 - -0.9 1,861,339 + -3.4 1,861,339 + -3.4 1,861,357 - +1.6 1,861,411 + MPMX20_01767 0.15 -0.3 1,861,414 - MPMX20_01767 0.15 -0.3 1,861,433 + MPMX20_01767 0.18 -1.0 1,861,448 - MPMX20_01767 0.21 -1.8 1,861,448 - MPMX20_01767 0.21 +0.2 1,861,448 - MPMX20_01767 0.21 +2.7 1,861,517 + MPMX20_01767 0.33 +0.1 1,861,547 - MPMX20_01767 0.38 +1.6 1,861,581 + MPMX20_01767 0.44 +2.6 1,861,587 - MPMX20_01767 0.45 +0.2 1,861,589 - MPMX20_01767 0.45 +0.6 1,861,589 - MPMX20_01767 0.45 -3.4 1,861,589 - MPMX20_01767 0.45 -0.9 1,861,638 - MPMX20_01767 0.53 -1.3 1,861,711 - MPMX20_01767 0.66 +0.5 1,861,729 + MPMX20_01767 0.69 +1.0 1,861,784 - MPMX20_01767 0.78 +0.2 1,861,877 + +1.6 1,861,878 + +1.2 1,861,878 + -0.7 1,861,878 + +0.6 1,861,879 + +1.1 1,861,924 + -1.1 1,861,989 + -0.2 1,862,096 + +2.6 1,862,140 + MPMX20_01768 0.17 +3.6 1,862,168 + MPMX20_01768 0.22 +1.0 1,862,178 + MPMX20_01768 0.24 +1.6 1,862,180 + MPMX20_01768 0.25 +0.0 1,862,190 + MPMX20_01768 0.27 +1.0 1,862,260 + MPMX20_01768 0.40 -1.2
Or see this region's nucleotide sequence