Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01766

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01765 and MPMX20_01766 are separated by 598 nucleotidesMPMX20_01766 and MPMX20_01767 are separated by 63 nucleotidesMPMX20_01767 and MPMX20_01768 are separated by 140 nucleotides MPMX20_01765: MPMX20_01765 - Ribonuclease E, at 1,856,618 to 1,859,743 _01765 MPMX20_01766: MPMX20_01766 - Ribosomal large subunit pseudouridine synthase C, at 1,860,342 to 1,861,262 _01766 MPMX20_01767: MPMX20_01767 - 7-methyl-GTP pyrophosphatase, at 1,861,326 to 1,861,910 _01767 MPMX20_01768: MPMX20_01768 - Large ribosomal RNA subunit accumulation protein YceD, at 1,862,051 to 1,862,572 _01768 Position (kb) 1860 1861 1862Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1859.813 kb on - strandat 1859.845 kb on - strandat 1859.851 kb on - strandat 1859.852 kb on - strandat 1859.852 kb on - strandat 1859.852 kb on - strandat 1859.852 kb on - strandat 1859.908 kb on - strandat 1859.942 kb on - strandat 1859.942 kb on - strandat 1859.942 kb on - strandat 1859.942 kb on - strandat 1859.942 kb on - strandat 1859.965 kb on - strandat 1859.965 kb on - strandat 1860.024 kb on - strandat 1860.185 kb on + strandat 1860.185 kb on + strandat 1860.225 kb on + strandat 1860.232 kb on + strandat 1860.326 kb on + strandat 1860.377 kb on - strandat 1860.401 kb on + strandat 1860.401 kb on + strandat 1860.401 kb on + strandat 1860.401 kb on + strandat 1860.401 kb on + strandat 1860.401 kb on + strandat 1860.401 kb on + strandat 1860.401 kb on + strandat 1860.409 kb on - strandat 1860.409 kb on - strandat 1860.409 kb on - strandat 1860.409 kb on - strandat 1860.409 kb on - strandat 1860.409 kb on - strandat 1860.447 kb on + strand, within MPMX20_01766at 1860.447 kb on + strand, within MPMX20_01766at 1860.500 kb on - strand, within MPMX20_01766at 1860.502 kb on + strand, within MPMX20_01766at 1860.592 kb on + strand, within MPMX20_01766at 1860.621 kb on - strand, within MPMX20_01766at 1860.654 kb on - strand, within MPMX20_01766at 1860.659 kb on - strand, within MPMX20_01766at 1860.681 kb on - strand, within MPMX20_01766at 1860.681 kb on - strand, within MPMX20_01766at 1860.731 kb on + strand, within MPMX20_01766at 1860.762 kb on - strand, within MPMX20_01766at 1860.797 kb on - strand, within MPMX20_01766at 1860.836 kb on - strand, within MPMX20_01766at 1860.875 kb on + strand, within MPMX20_01766at 1860.875 kb on + strand, within MPMX20_01766at 1860.883 kb on - strand, within MPMX20_01766at 1860.883 kb on - strand, within MPMX20_01766at 1860.883 kb on - strand, within MPMX20_01766at 1860.883 kb on - strand, within MPMX20_01766at 1860.887 kb on + strand, within MPMX20_01766at 1860.927 kb on - strand, within MPMX20_01766at 1860.933 kb on + strand, within MPMX20_01766at 1860.986 kb on + strand, within MPMX20_01766at 1861.103 kb on + strand, within MPMX20_01766at 1861.179 kb on + strandat 1861.181 kb on + strandat 1861.280 kb on + strandat 1861.325 kb on - strandat 1861.339 kb on + strandat 1861.339 kb on + strandat 1861.357 kb on - strandat 1861.411 kb on + strand, within MPMX20_01767at 1861.414 kb on - strand, within MPMX20_01767at 1861.433 kb on + strand, within MPMX20_01767at 1861.448 kb on - strand, within MPMX20_01767at 1861.448 kb on - strand, within MPMX20_01767at 1861.448 kb on - strand, within MPMX20_01767at 1861.517 kb on + strand, within MPMX20_01767at 1861.547 kb on - strand, within MPMX20_01767at 1861.581 kb on + strand, within MPMX20_01767at 1861.587 kb on - strand, within MPMX20_01767at 1861.589 kb on - strand, within MPMX20_01767at 1861.589 kb on - strand, within MPMX20_01767at 1861.589 kb on - strand, within MPMX20_01767at 1861.638 kb on - strand, within MPMX20_01767at 1861.711 kb on - strand, within MPMX20_01767at 1861.729 kb on + strand, within MPMX20_01767at 1861.784 kb on - strand, within MPMX20_01767at 1861.877 kb on + strandat 1861.878 kb on + strandat 1861.878 kb on + strandat 1861.878 kb on + strandat 1861.879 kb on + strandat 1861.924 kb on + strandat 1861.989 kb on + strandat 1862.096 kb on + strandat 1862.140 kb on + strand, within MPMX20_01768at 1862.168 kb on + strand, within MPMX20_01768at 1862.178 kb on + strand, within MPMX20_01768at 1862.180 kb on + strand, within MPMX20_01768at 1862.190 kb on + strand, within MPMX20_01768at 1862.260 kb on + strand, within MPMX20_01768

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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1,859,813 - -1.0
1,859,845 - +0.1
1,859,851 - -1.4
1,859,852 - -0.4
1,859,852 - -1.9
1,859,852 - -2.0
1,859,852 - +0.2
1,859,908 - -0.9
1,859,942 - +0.0
1,859,942 - +0.0
1,859,942 - +0.0
1,859,942 - +1.0
1,859,942 - +2.9
1,859,965 - +1.7
1,859,965 - +1.3
1,860,024 - +0.3
1,860,185 + -1.6
1,860,185 + -0.8
1,860,225 + -3.3
1,860,232 + -2.5
1,860,326 + +0.3
1,860,377 - +0.0
1,860,401 + +0.5
1,860,401 + -2.7
1,860,401 + -2.6
1,860,401 + -3.6
1,860,401 + -0.8
1,860,401 + +1.6
1,860,401 + -1.2
1,860,401 + -1.9
1,860,409 - +1.5
1,860,409 - -0.7
1,860,409 - +0.3
1,860,409 - -2.3
1,860,409 - -1.0
1,860,409 - -1.7
1,860,447 + MPMX20_01766 0.11 -0.1
1,860,447 + MPMX20_01766 0.11 -0.1
1,860,500 - MPMX20_01766 0.17 -1.0
1,860,502 + MPMX20_01766 0.17 -0.4
1,860,592 + MPMX20_01766 0.27 +0.1
1,860,621 - MPMX20_01766 0.30 -1.7
1,860,654 - MPMX20_01766 0.34 -1.3
1,860,659 - MPMX20_01766 0.34 -1.9
1,860,681 - MPMX20_01766 0.37 -2.5
1,860,681 - MPMX20_01766 0.37 -3.3
1,860,731 + MPMX20_01766 0.42 -0.5
1,860,762 - MPMX20_01766 0.46 -2.1
1,860,797 - MPMX20_01766 0.49 +2.2
1,860,836 - MPMX20_01766 0.54 +1.9
1,860,875 + MPMX20_01766 0.58 -2.0
1,860,875 + MPMX20_01766 0.58 +0.0
1,860,883 - MPMX20_01766 0.59 +0.5
1,860,883 - MPMX20_01766 0.59 -0.6
1,860,883 - MPMX20_01766 0.59 -1.0
1,860,883 - MPMX20_01766 0.59 -1.0
1,860,887 + MPMX20_01766 0.59 -2.9
1,860,927 - MPMX20_01766 0.64 -2.0
1,860,933 + MPMX20_01766 0.64 +1.0
1,860,986 + MPMX20_01766 0.70 +1.0
1,861,103 + MPMX20_01766 0.83 +1.0
1,861,179 + -1.7
1,861,181 + +1.1
1,861,280 + +0.3
1,861,325 - -0.9
1,861,339 + -3.4
1,861,339 + -3.4
1,861,357 - +1.6
1,861,411 + MPMX20_01767 0.15 -0.3
1,861,414 - MPMX20_01767 0.15 -0.3
1,861,433 + MPMX20_01767 0.18 -1.0
1,861,448 - MPMX20_01767 0.21 -1.8
1,861,448 - MPMX20_01767 0.21 +0.2
1,861,448 - MPMX20_01767 0.21 +2.7
1,861,517 + MPMX20_01767 0.33 +0.1
1,861,547 - MPMX20_01767 0.38 +1.6
1,861,581 + MPMX20_01767 0.44 +2.6
1,861,587 - MPMX20_01767 0.45 +0.2
1,861,589 - MPMX20_01767 0.45 +0.6
1,861,589 - MPMX20_01767 0.45 -3.4
1,861,589 - MPMX20_01767 0.45 -0.9
1,861,638 - MPMX20_01767 0.53 -1.3
1,861,711 - MPMX20_01767 0.66 +0.5
1,861,729 + MPMX20_01767 0.69 +1.0
1,861,784 - MPMX20_01767 0.78 +0.2
1,861,877 + +1.6
1,861,878 + +1.2
1,861,878 + -0.7
1,861,878 + +0.6
1,861,879 + +1.1
1,861,924 + -1.1
1,861,989 + -0.2
1,862,096 + +2.6
1,862,140 + MPMX20_01768 0.17 +3.6
1,862,168 + MPMX20_01768 0.22 +1.0
1,862,178 + MPMX20_01768 0.24 +1.6
1,862,180 + MPMX20_01768 0.25 +0.0
1,862,190 + MPMX20_01768 0.27 +1.0
1,862,260 + MPMX20_01768 0.40 -1.2

Or see this region's nucleotide sequence