Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01765

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01764 and MPMX20_01765 are separated by 40 nucleotidesMPMX20_01765 and MPMX20_01766 are separated by 598 nucleotides MPMX20_01764: MPMX20_01764 - HTH-type transcriptional regulator DmlR, at 1,855,639 to 1,856,577 _01764 MPMX20_01765: MPMX20_01765 - Ribonuclease E, at 1,856,618 to 1,859,743 _01765 MPMX20_01766: MPMX20_01766 - Ribosomal large subunit pseudouridine synthase C, at 1,860,342 to 1,861,262 _01766 Position (kb) 1856 1857 1858 1859 1860Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1855.675 kb on - strandat 1855.685 kb on + strandat 1855.732 kb on - strandat 1855.744 kb on + strand, within MPMX20_01764at 1855.884 kb on - strand, within MPMX20_01764at 1855.914 kb on + strand, within MPMX20_01764at 1855.961 kb on + strand, within MPMX20_01764at 1855.969 kb on - strand, within MPMX20_01764at 1856.007 kb on + strand, within MPMX20_01764at 1856.015 kb on - strand, within MPMX20_01764at 1856.076 kb on + strand, within MPMX20_01764at 1856.120 kb on + strand, within MPMX20_01764at 1856.138 kb on - strand, within MPMX20_01764at 1856.140 kb on + strand, within MPMX20_01764at 1856.148 kb on - strand, within MPMX20_01764at 1856.148 kb on - strand, within MPMX20_01764at 1856.150 kb on + strand, within MPMX20_01764at 1856.150 kb on + strand, within MPMX20_01764at 1856.162 kb on + strand, within MPMX20_01764at 1856.240 kb on + strand, within MPMX20_01764at 1856.305 kb on - strand, within MPMX20_01764at 1856.356 kb on + strand, within MPMX20_01764at 1856.364 kb on - strand, within MPMX20_01764at 1856.365 kb on - strand, within MPMX20_01764at 1856.720 kb on - strandat 1856.819 kb on - strandat 1857.042 kb on + strand, within MPMX20_01765at 1857.120 kb on - strand, within MPMX20_01765at 1857.244 kb on - strand, within MPMX20_01765at 1857.314 kb on - strand, within MPMX20_01765at 1857.406 kb on - strand, within MPMX20_01765at 1857.419 kb on + strand, within MPMX20_01765at 1857.627 kb on - strand, within MPMX20_01765at 1857.886 kb on - strand, within MPMX20_01765at 1858.047 kb on - strand, within MPMX20_01765at 1859.813 kb on - strandat 1859.845 kb on - strandat 1859.851 kb on - strandat 1859.852 kb on - strandat 1859.852 kb on - strandat 1859.852 kb on - strandat 1859.852 kb on - strandat 1859.908 kb on - strandat 1859.942 kb on - strandat 1859.942 kb on - strandat 1859.942 kb on - strandat 1859.942 kb on - strandat 1859.942 kb on - strandat 1859.965 kb on - strandat 1859.965 kb on - strandat 1860.024 kb on - strandat 1860.185 kb on + strandat 1860.185 kb on + strandat 1860.225 kb on + strandat 1860.232 kb on + strandat 1860.326 kb on + strandat 1860.377 kb on - strandat 1860.401 kb on + strandat 1860.401 kb on + strandat 1860.401 kb on + strandat 1860.401 kb on + strandat 1860.401 kb on + strandat 1860.401 kb on + strandat 1860.401 kb on + strandat 1860.401 kb on + strandat 1860.409 kb on - strandat 1860.409 kb on - strandat 1860.409 kb on - strandat 1860.409 kb on - strandat 1860.409 kb on - strandat 1860.409 kb on - strandat 1860.447 kb on + strand, within MPMX20_01766at 1860.447 kb on + strand, within MPMX20_01766at 1860.500 kb on - strand, within MPMX20_01766at 1860.502 kb on + strand, within MPMX20_01766at 1860.592 kb on + strand, within MPMX20_01766at 1860.621 kb on - strand, within MPMX20_01766at 1860.654 kb on - strand, within MPMX20_01766at 1860.659 kb on - strand, within MPMX20_01766at 1860.681 kb on - strand, within MPMX20_01766at 1860.681 kb on - strand, within MPMX20_01766at 1860.731 kb on + strand, within MPMX20_01766

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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1,855,675 - +0.1
1,855,685 + -2.9
1,855,732 - -0.6
1,855,744 + MPMX20_01764 0.11 -0.1
1,855,884 - MPMX20_01764 0.26 +0.3
1,855,914 + MPMX20_01764 0.29 +0.5
1,855,961 + MPMX20_01764 0.34 -0.1
1,855,969 - MPMX20_01764 0.35 -0.0
1,856,007 + MPMX20_01764 0.39 +0.8
1,856,015 - MPMX20_01764 0.40 +0.0
1,856,076 + MPMX20_01764 0.47 -1.9
1,856,120 + MPMX20_01764 0.51 -1.3
1,856,138 - MPMX20_01764 0.53 +2.6
1,856,140 + MPMX20_01764 0.53 +1.3
1,856,148 - MPMX20_01764 0.54 +1.0
1,856,148 - MPMX20_01764 0.54 -0.9
1,856,150 + MPMX20_01764 0.54 -1.5
1,856,150 + MPMX20_01764 0.54 -2.5
1,856,162 + MPMX20_01764 0.56 +1.9
1,856,240 + MPMX20_01764 0.64 +4.2
1,856,305 - MPMX20_01764 0.71 -2.6
1,856,356 + MPMX20_01764 0.76 -0.1
1,856,364 - MPMX20_01764 0.77 +0.0
1,856,365 - MPMX20_01764 0.77 +1.5
1,856,720 - -2.3
1,856,819 - -2.2
1,857,042 + MPMX20_01765 0.14 -2.0
1,857,120 - MPMX20_01765 0.16 -2.1
1,857,244 - MPMX20_01765 0.20 -1.8
1,857,314 - MPMX20_01765 0.22 +0.0
1,857,406 - MPMX20_01765 0.25 -1.6
1,857,419 + MPMX20_01765 0.26 -0.9
1,857,627 - MPMX20_01765 0.32 +0.3
1,857,886 - MPMX20_01765 0.41 +0.6
1,858,047 - MPMX20_01765 0.46 -0.2
1,859,813 - -1.0
1,859,845 - +0.1
1,859,851 - -1.4
1,859,852 - -0.4
1,859,852 - -1.9
1,859,852 - -2.0
1,859,852 - +0.2
1,859,908 - -0.9
1,859,942 - +0.0
1,859,942 - +0.0
1,859,942 - +0.0
1,859,942 - +1.0
1,859,942 - +2.9
1,859,965 - +1.7
1,859,965 - +1.3
1,860,024 - +0.3
1,860,185 + -1.6
1,860,185 + -0.8
1,860,225 + -3.3
1,860,232 + -2.5
1,860,326 + +0.3
1,860,377 - +0.0
1,860,401 + +0.5
1,860,401 + -2.7
1,860,401 + -2.6
1,860,401 + -3.6
1,860,401 + -0.8
1,860,401 + +1.6
1,860,401 + -1.2
1,860,401 + -1.9
1,860,409 - +1.5
1,860,409 - -0.7
1,860,409 - +0.3
1,860,409 - -2.3
1,860,409 - -1.0
1,860,409 - -1.7
1,860,447 + MPMX20_01766 0.11 -0.1
1,860,447 + MPMX20_01766 0.11 -0.1
1,860,500 - MPMX20_01766 0.17 -1.0
1,860,502 + MPMX20_01766 0.17 -0.4
1,860,592 + MPMX20_01766 0.27 +0.1
1,860,621 - MPMX20_01766 0.30 -1.7
1,860,654 - MPMX20_01766 0.34 -1.3
1,860,659 - MPMX20_01766 0.34 -1.9
1,860,681 - MPMX20_01766 0.37 -2.5
1,860,681 - MPMX20_01766 0.37 -3.3
1,860,731 + MPMX20_01766 0.42 -0.5

Or see this region's nucleotide sequence