Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01764 and MPMX20_01765 are separated by 40 nucleotides MPMX20_01765 and MPMX20_01766 are separated by 598 nucleotides
MPMX20_01764: MPMX20_01764 - HTH-type transcriptional regulator DmlR, at 1,855,639 to 1,856,577
_01764
MPMX20_01765: MPMX20_01765 - Ribonuclease E, at 1,856,618 to 1,859,743
_01765
MPMX20_01766: MPMX20_01766 - Ribosomal large subunit pseudouridine synthase C, at 1,860,342 to 1,861,262
_01766
Position (kb)
1856
1857
1858
1859
1860 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1855.675 kb on - strand at 1855.685 kb on + strand at 1855.732 kb on - strand at 1855.744 kb on + strand, within MPMX20_01764 at 1855.884 kb on - strand, within MPMX20_01764 at 1855.914 kb on + strand, within MPMX20_01764 at 1855.961 kb on + strand, within MPMX20_01764 at 1855.969 kb on - strand, within MPMX20_01764 at 1856.007 kb on + strand, within MPMX20_01764 at 1856.015 kb on - strand, within MPMX20_01764 at 1856.076 kb on + strand, within MPMX20_01764 at 1856.120 kb on + strand, within MPMX20_01764 at 1856.138 kb on - strand, within MPMX20_01764 at 1856.140 kb on + strand, within MPMX20_01764 at 1856.148 kb on - strand, within MPMX20_01764 at 1856.148 kb on - strand, within MPMX20_01764 at 1856.150 kb on + strand, within MPMX20_01764 at 1856.150 kb on + strand, within MPMX20_01764 at 1856.162 kb on + strand, within MPMX20_01764 at 1856.240 kb on + strand, within MPMX20_01764 at 1856.305 kb on - strand, within MPMX20_01764 at 1856.356 kb on + strand, within MPMX20_01764 at 1856.364 kb on - strand, within MPMX20_01764 at 1856.365 kb on - strand, within MPMX20_01764 at 1856.720 kb on - strand at 1856.819 kb on - strand at 1857.042 kb on + strand, within MPMX20_01765 at 1857.120 kb on - strand, within MPMX20_01765 at 1857.244 kb on - strand, within MPMX20_01765 at 1857.314 kb on - strand, within MPMX20_01765 at 1857.406 kb on - strand, within MPMX20_01765 at 1857.419 kb on + strand, within MPMX20_01765 at 1857.627 kb on - strand, within MPMX20_01765 at 1857.886 kb on - strand, within MPMX20_01765 at 1858.047 kb on - strand, within MPMX20_01765 at 1859.813 kb on - strand at 1859.845 kb on - strand at 1859.851 kb on - strand at 1859.852 kb on - strand at 1859.852 kb on - strand at 1859.852 kb on - strand at 1859.852 kb on - strand at 1859.908 kb on - strand at 1859.942 kb on - strand at 1859.942 kb on - strand at 1859.942 kb on - strand at 1859.942 kb on - strand at 1859.942 kb on - strand at 1859.965 kb on - strand at 1859.965 kb on - strand at 1860.024 kb on - strand at 1860.185 kb on + strand at 1860.185 kb on + strand at 1860.225 kb on + strand at 1860.232 kb on + strand at 1860.326 kb on + strand at 1860.377 kb on - strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.401 kb on + strand at 1860.409 kb on - strand at 1860.409 kb on - strand at 1860.409 kb on - strand at 1860.409 kb on - strand at 1860.409 kb on - strand at 1860.409 kb on - strand at 1860.447 kb on + strand, within MPMX20_01766 at 1860.447 kb on + strand, within MPMX20_01766 at 1860.500 kb on - strand, within MPMX20_01766 at 1860.502 kb on + strand, within MPMX20_01766 at 1860.592 kb on + strand, within MPMX20_01766 at 1860.621 kb on - strand, within MPMX20_01766 at 1860.654 kb on - strand, within MPMX20_01766 at 1860.659 kb on - strand, within MPMX20_01766 at 1860.681 kb on - strand, within MPMX20_01766 at 1860.681 kb on - strand, within MPMX20_01766 at 1860.731 kb on + strand, within MPMX20_01766
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 1,855,675 - +0.1 1,855,685 + -2.9 1,855,732 - -0.6 1,855,744 + MPMX20_01764 0.11 -0.1 1,855,884 - MPMX20_01764 0.26 +0.3 1,855,914 + MPMX20_01764 0.29 +0.5 1,855,961 + MPMX20_01764 0.34 -0.1 1,855,969 - MPMX20_01764 0.35 -0.0 1,856,007 + MPMX20_01764 0.39 +0.8 1,856,015 - MPMX20_01764 0.40 +0.0 1,856,076 + MPMX20_01764 0.47 -1.9 1,856,120 + MPMX20_01764 0.51 -1.3 1,856,138 - MPMX20_01764 0.53 +2.6 1,856,140 + MPMX20_01764 0.53 +1.3 1,856,148 - MPMX20_01764 0.54 +1.0 1,856,148 - MPMX20_01764 0.54 -0.9 1,856,150 + MPMX20_01764 0.54 -1.5 1,856,150 + MPMX20_01764 0.54 -2.5 1,856,162 + MPMX20_01764 0.56 +1.9 1,856,240 + MPMX20_01764 0.64 +4.2 1,856,305 - MPMX20_01764 0.71 -2.6 1,856,356 + MPMX20_01764 0.76 -0.1 1,856,364 - MPMX20_01764 0.77 +0.0 1,856,365 - MPMX20_01764 0.77 +1.5 1,856,720 - -2.3 1,856,819 - -2.2 1,857,042 + MPMX20_01765 0.14 -2.0 1,857,120 - MPMX20_01765 0.16 -2.1 1,857,244 - MPMX20_01765 0.20 -1.8 1,857,314 - MPMX20_01765 0.22 +0.0 1,857,406 - MPMX20_01765 0.25 -1.6 1,857,419 + MPMX20_01765 0.26 -0.9 1,857,627 - MPMX20_01765 0.32 +0.3 1,857,886 - MPMX20_01765 0.41 +0.6 1,858,047 - MPMX20_01765 0.46 -0.2 1,859,813 - -1.0 1,859,845 - +0.1 1,859,851 - -1.4 1,859,852 - -0.4 1,859,852 - -1.9 1,859,852 - -2.0 1,859,852 - +0.2 1,859,908 - -0.9 1,859,942 - +0.0 1,859,942 - +0.0 1,859,942 - +0.0 1,859,942 - +1.0 1,859,942 - +2.9 1,859,965 - +1.7 1,859,965 - +1.3 1,860,024 - +0.3 1,860,185 + -1.6 1,860,185 + -0.8 1,860,225 + -3.3 1,860,232 + -2.5 1,860,326 + +0.3 1,860,377 - +0.0 1,860,401 + +0.5 1,860,401 + -2.7 1,860,401 + -2.6 1,860,401 + -3.6 1,860,401 + -0.8 1,860,401 + +1.6 1,860,401 + -1.2 1,860,401 + -1.9 1,860,409 - +1.5 1,860,409 - -0.7 1,860,409 - +0.3 1,860,409 - -2.3 1,860,409 - -1.0 1,860,409 - -1.7 1,860,447 + MPMX20_01766 0.11 -0.1 1,860,447 + MPMX20_01766 0.11 -0.1 1,860,500 - MPMX20_01766 0.17 -1.0 1,860,502 + MPMX20_01766 0.17 -0.4 1,860,592 + MPMX20_01766 0.27 +0.1 1,860,621 - MPMX20_01766 0.30 -1.7 1,860,654 - MPMX20_01766 0.34 -1.3 1,860,659 - MPMX20_01766 0.34 -1.9 1,860,681 - MPMX20_01766 0.37 -2.5 1,860,681 - MPMX20_01766 0.37 -3.3 1,860,731 + MPMX20_01766 0.42 -0.5
Or see this region's nucleotide sequence