Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01698

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01696 and MPMX20_01697 are separated by 7 nucleotidesMPMX20_01697 and MPMX20_01698 are separated by 11 nucleotidesMPMX20_01698 and MPMX20_01699 overlap by 1 nucleotides MPMX20_01696: MPMX20_01696 - Putative aminoacrylate hydrolase RutD, at 1,792,865 to 1,793,665 _01696 MPMX20_01697: MPMX20_01697 - Putative aminoacrylate peracid reductase RutC, at 1,793,673 to 1,794,059 _01697 MPMX20_01698: MPMX20_01698 - Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB, at 1,794,071 to 1,794,760 _01698 MPMX20_01699: MPMX20_01699 - Pyrimidine monooxygenase RutA, at 1,794,760 to 1,795,851 _01699 Position (kb) 1794 1795Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1793.134 kb on - strand, within MPMX20_01696at 1793.149 kb on + strand, within MPMX20_01696at 1793.169 kb on - strand, within MPMX20_01696at 1793.170 kb on - strand, within MPMX20_01696at 1793.244 kb on + strand, within MPMX20_01696at 1793.244 kb on + strand, within MPMX20_01696at 1793.246 kb on - strand, within MPMX20_01696at 1793.252 kb on - strand, within MPMX20_01696at 1793.252 kb on - strand, within MPMX20_01696at 1793.252 kb on - strand, within MPMX20_01696at 1793.257 kb on - strand, within MPMX20_01696at 1793.295 kb on - strand, within MPMX20_01696at 1793.311 kb on + strand, within MPMX20_01696at 1793.342 kb on - strand, within MPMX20_01696at 1793.347 kb on - strand, within MPMX20_01696at 1793.409 kb on - strand, within MPMX20_01696at 1793.420 kb on + strand, within MPMX20_01696at 1793.527 kb on + strand, within MPMX20_01696at 1793.527 kb on + strand, within MPMX20_01696at 1793.527 kb on + strand, within MPMX20_01696at 1793.535 kb on - strand, within MPMX20_01696at 1793.535 kb on - strand, within MPMX20_01696at 1793.541 kb on + strand, within MPMX20_01696at 1793.549 kb on + strand, within MPMX20_01696at 1793.614 kb on + strandat 1793.736 kb on - strand, within MPMX20_01697at 1793.740 kb on + strand, within MPMX20_01697at 1793.745 kb on + strand, within MPMX20_01697at 1793.764 kb on + strand, within MPMX20_01697at 1793.764 kb on + strand, within MPMX20_01697at 1793.779 kb on + strand, within MPMX20_01697at 1794.020 kb on + strand, within MPMX20_01697at 1794.091 kb on - strandat 1794.103 kb on - strandat 1794.123 kb on + strandat 1794.155 kb on + strand, within MPMX20_01698at 1794.155 kb on + strand, within MPMX20_01698at 1794.158 kb on - strand, within MPMX20_01698at 1794.183 kb on + strand, within MPMX20_01698at 1794.189 kb on + strand, within MPMX20_01698at 1794.258 kb on - strand, within MPMX20_01698at 1794.368 kb on - strand, within MPMX20_01698at 1794.671 kb on + strand, within MPMX20_01698at 1794.718 kb on + strandat 1794.718 kb on + strandat 1794.718 kb on + strandat 1794.726 kb on - strandat 1794.726 kb on - strandat 1794.753 kb on - strandat 1794.771 kb on + strandat 1794.932 kb on - strand, within MPMX20_01699at 1794.958 kb on - strand, within MPMX20_01699at 1795.045 kb on + strand, within MPMX20_01699at 1795.065 kb on + strand, within MPMX20_01699at 1795.072 kb on - strand, within MPMX20_01699at 1795.079 kb on - strand, within MPMX20_01699at 1795.124 kb on + strand, within MPMX20_01699at 1795.142 kb on - strand, within MPMX20_01699at 1795.183 kb on - strand, within MPMX20_01699at 1795.214 kb on + strand, within MPMX20_01699at 1795.224 kb on - strand, within MPMX20_01699at 1795.224 kb on - strand, within MPMX20_01699at 1795.282 kb on + strand, within MPMX20_01699at 1795.290 kb on - strand, within MPMX20_01699at 1795.311 kb on + strand, within MPMX20_01699at 1795.391 kb on + strand, within MPMX20_01699at 1795.415 kb on - strand, within MPMX20_01699at 1795.426 kb on - strand, within MPMX20_01699at 1795.504 kb on - strand, within MPMX20_01699at 1795.514 kb on - strand, within MPMX20_01699at 1795.578 kb on + strand, within MPMX20_01699at 1795.578 kb on + strand, within MPMX20_01699at 1795.586 kb on - strand, within MPMX20_01699at 1795.586 kb on - strand, within MPMX20_01699at 1795.606 kb on - strand, within MPMX20_01699at 1795.611 kb on - strand, within MPMX20_01699at 1795.644 kb on + strand, within MPMX20_01699at 1795.757 kb on + strandat 1795.757 kb on + strandat 1795.757 kb on + strandat 1795.757 kb on + strandat 1795.757 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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1,793,134 - MPMX20_01696 0.34 +1.2
1,793,149 + MPMX20_01696 0.35 -0.1
1,793,169 - MPMX20_01696 0.38 -0.5
1,793,170 - MPMX20_01696 0.38 -2.3
1,793,244 + MPMX20_01696 0.47 +1.5
1,793,244 + MPMX20_01696 0.47 -0.5
1,793,246 - MPMX20_01696 0.48 -2.3
1,793,252 - MPMX20_01696 0.48 +0.9
1,793,252 - MPMX20_01696 0.48 +0.9
1,793,252 - MPMX20_01696 0.48 +0.5
1,793,257 - MPMX20_01696 0.49 -0.1
1,793,295 - MPMX20_01696 0.54 -2.7
1,793,311 + MPMX20_01696 0.56 +0.9
1,793,342 - MPMX20_01696 0.60 +1.0
1,793,347 - MPMX20_01696 0.60 +0.9
1,793,409 - MPMX20_01696 0.68 -0.3
1,793,420 + MPMX20_01696 0.69 -1.2
1,793,527 + MPMX20_01696 0.83 +0.6
1,793,527 + MPMX20_01696 0.83 +0.1
1,793,527 + MPMX20_01696 0.83 -1.9
1,793,535 - MPMX20_01696 0.84 -1.1
1,793,535 - MPMX20_01696 0.84 -0.2
1,793,541 + MPMX20_01696 0.84 +0.2
1,793,549 + MPMX20_01696 0.85 -0.4
1,793,614 + +0.4
1,793,736 - MPMX20_01697 0.16 -0.1
1,793,740 + MPMX20_01697 0.17 -3.1
1,793,745 + MPMX20_01697 0.19 -1.3
1,793,764 + MPMX20_01697 0.24 -1.4
1,793,764 + MPMX20_01697 0.24 +0.9
1,793,779 + MPMX20_01697 0.27 +0.3
1,794,020 + MPMX20_01697 0.90 -1.6
1,794,091 - -1.0
1,794,103 - +0.5
1,794,123 + +0.1
1,794,155 + MPMX20_01698 0.12 -1.2
1,794,155 + MPMX20_01698 0.12 -1.8
1,794,158 - MPMX20_01698 0.13 -1.1
1,794,183 + MPMX20_01698 0.16 -0.2
1,794,189 + MPMX20_01698 0.17 -1.5
1,794,258 - MPMX20_01698 0.27 +0.2
1,794,368 - MPMX20_01698 0.43 -2.4
1,794,671 + MPMX20_01698 0.87 -2.3
1,794,718 + -2.1
1,794,718 + -1.3
1,794,718 + +1.6
1,794,726 - -1.8
1,794,726 - +1.5
1,794,753 - -1.1
1,794,771 + +2.4
1,794,932 - MPMX20_01699 0.16 -0.6
1,794,958 - MPMX20_01699 0.18 -2.4
1,795,045 + MPMX20_01699 0.26 -2.8
1,795,065 + MPMX20_01699 0.28 -0.8
1,795,072 - MPMX20_01699 0.29 -2.6
1,795,079 - MPMX20_01699 0.29 -0.5
1,795,124 + MPMX20_01699 0.33 -1.6
1,795,142 - MPMX20_01699 0.35 -1.3
1,795,183 - MPMX20_01699 0.39 -1.9
1,795,214 + MPMX20_01699 0.42 -0.1
1,795,224 - MPMX20_01699 0.42 +2.1
1,795,224 - MPMX20_01699 0.42 -2.5
1,795,282 + MPMX20_01699 0.48 -2.0
1,795,290 - MPMX20_01699 0.49 +0.2
1,795,311 + MPMX20_01699 0.50 -0.1
1,795,391 + MPMX20_01699 0.58 -0.7
1,795,415 - MPMX20_01699 0.60 +0.2
1,795,426 - MPMX20_01699 0.61 -0.1
1,795,504 - MPMX20_01699 0.68 -1.8
1,795,514 - MPMX20_01699 0.69 -1.2
1,795,578 + MPMX20_01699 0.75 -2.7
1,795,578 + MPMX20_01699 0.75 +1.0
1,795,586 - MPMX20_01699 0.76 -0.4
1,795,586 - MPMX20_01699 0.76 -1.6
1,795,606 - MPMX20_01699 0.77 -0.9
1,795,611 - MPMX20_01699 0.78 -0.8
1,795,644 + MPMX20_01699 0.81 +0.1
1,795,757 + -1.4
1,795,757 + +0.2
1,795,757 + -2.7
1,795,757 + -0.9
1,795,757 + -1.1

Or see this region's nucleotide sequence