Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01662

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01660 and MPMX20_01661 overlap by 1 nucleotidesMPMX20_01661 and MPMX20_01662 are separated by 14 nucleotidesMPMX20_01662 and MPMX20_01663 are separated by 90 nucleotidesMPMX20_01663 and MPMX20_01664 overlap by 4 nucleotides MPMX20_01660: MPMX20_01660 - hypothetical protein, at 1,759,554 to 1,760,270 _01660 MPMX20_01661: MPMX20_01661 - Hydantoin racemase, at 1,760,270 to 1,761,013 _01661 MPMX20_01662: MPMX20_01662 - hypothetical protein, at 1,761,028 to 1,761,960 _01662 MPMX20_01663: MPMX20_01663 - hypothetical protein, at 1,762,051 to 1,762,437 _01663 MPMX20_01664: MPMX20_01664 - 1-carboxybiuret hydrolase subunit AtzE, at 1,762,434 to 1,763,831 _01664 Position (kb) 1761 1762Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1760.043 kb on - strand, within MPMX20_01660at 1760.057 kb on + strand, within MPMX20_01660at 1760.218 kb on + strandat 1760.262 kb on - strandat 1760.296 kb on - strandat 1760.296 kb on - strandat 1760.307 kb on - strandat 1760.391 kb on + strand, within MPMX20_01661at 1760.404 kb on - strand, within MPMX20_01661at 1760.406 kb on + strand, within MPMX20_01661at 1760.471 kb on + strand, within MPMX20_01661at 1760.487 kb on - strand, within MPMX20_01661at 1760.513 kb on - strand, within MPMX20_01661at 1760.522 kb on - strand, within MPMX20_01661at 1760.589 kb on - strand, within MPMX20_01661at 1760.665 kb on + strand, within MPMX20_01661at 1760.693 kb on + strand, within MPMX20_01661at 1760.929 kb on - strand, within MPMX20_01661at 1760.951 kb on + strandat 1760.997 kb on - strandat 1761.106 kb on - strandat 1761.130 kb on + strand, within MPMX20_01662at 1761.190 kb on - strand, within MPMX20_01662at 1761.291 kb on - strand, within MPMX20_01662at 1761.391 kb on + strand, within MPMX20_01662at 1761.468 kb on + strand, within MPMX20_01662at 1761.468 kb on + strand, within MPMX20_01662at 1761.476 kb on - strand, within MPMX20_01662at 1761.476 kb on - strand, within MPMX20_01662at 1761.484 kb on + strand, within MPMX20_01662at 1761.588 kb on - strand, within MPMX20_01662at 1761.603 kb on - strand, within MPMX20_01662at 1761.633 kb on - strand, within MPMX20_01662at 1761.661 kb on - strand, within MPMX20_01662at 1761.664 kb on + strand, within MPMX20_01662at 1761.717 kb on + strand, within MPMX20_01662at 1761.723 kb on - strand, within MPMX20_01662at 1761.735 kb on + strand, within MPMX20_01662at 1761.735 kb on + strand, within MPMX20_01662at 1761.743 kb on - strand, within MPMX20_01662at 1761.780 kb on + strand, within MPMX20_01662at 1761.875 kb on + strandat 1761.880 kb on + strandat 1761.900 kb on + strandat 1761.900 kb on + strandat 1761.905 kb on + strandat 1761.913 kb on - strandat 1761.963 kb on + strandat 1761.971 kb on - strandat 1761.993 kb on - strandat 1762.003 kb on - strandat 1762.039 kb on + strandat 1762.049 kb on - strandat 1762.074 kb on - strandat 1762.074 kb on - strandat 1762.172 kb on + strand, within MPMX20_01663at 1762.172 kb on + strand, within MPMX20_01663at 1762.180 kb on - strand, within MPMX20_01663at 1762.180 kb on - strand, within MPMX20_01663at 1762.180 kb on - strand, within MPMX20_01663at 1762.180 kb on - strand, within MPMX20_01663at 1762.181 kb on + strand, within MPMX20_01663at 1762.271 kb on + strand, within MPMX20_01663at 1762.286 kb on - strand, within MPMX20_01663at 1762.298 kb on - strand, within MPMX20_01663at 1762.316 kb on + strand, within MPMX20_01663at 1762.324 kb on - strand, within MPMX20_01663at 1762.346 kb on - strand, within MPMX20_01663at 1762.357 kb on - strand, within MPMX20_01663at 1762.375 kb on + strand, within MPMX20_01663at 1762.381 kb on - strand, within MPMX20_01663at 1762.388 kb on - strand, within MPMX20_01663at 1762.421 kb on - strandat 1762.579 kb on - strand, within MPMX20_01664at 1762.623 kb on + strand, within MPMX20_01664at 1762.640 kb on - strand, within MPMX20_01664at 1762.818 kb on - strand, within MPMX20_01664at 1762.863 kb on - strand, within MPMX20_01664at 1762.929 kb on - strand, within MPMX20_01664

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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1,760,043 - MPMX20_01660 0.68 -1.1
1,760,057 + MPMX20_01660 0.70 +1.4
1,760,218 + +0.5
1,760,262 - +3.7
1,760,296 - -2.6
1,760,296 - -0.1
1,760,307 - +0.9
1,760,391 + MPMX20_01661 0.16 -0.5
1,760,404 - MPMX20_01661 0.18 +0.9
1,760,406 + MPMX20_01661 0.18 +0.7
1,760,471 + MPMX20_01661 0.27 -0.2
1,760,487 - MPMX20_01661 0.29 -0.7
1,760,513 - MPMX20_01661 0.33 +0.9
1,760,522 - MPMX20_01661 0.34 -0.3
1,760,589 - MPMX20_01661 0.43 -2.4
1,760,665 + MPMX20_01661 0.53 -2.6
1,760,693 + MPMX20_01661 0.57 +0.4
1,760,929 - MPMX20_01661 0.89 +0.6
1,760,951 + -0.4
1,760,997 - +0.6
1,761,106 - -2.8
1,761,130 + MPMX20_01662 0.11 +0.2
1,761,190 - MPMX20_01662 0.17 -1.3
1,761,291 - MPMX20_01662 0.28 -3.2
1,761,391 + MPMX20_01662 0.39 -2.9
1,761,468 + MPMX20_01662 0.47 -1.9
1,761,468 + MPMX20_01662 0.47 -1.2
1,761,476 - MPMX20_01662 0.48 -0.5
1,761,476 - MPMX20_01662 0.48 -1.6
1,761,484 + MPMX20_01662 0.49 +0.4
1,761,588 - MPMX20_01662 0.60 +1.7
1,761,603 - MPMX20_01662 0.62 -0.1
1,761,633 - MPMX20_01662 0.65 +1.7
1,761,661 - MPMX20_01662 0.68 -2.9
1,761,664 + MPMX20_01662 0.68 -0.1
1,761,717 + MPMX20_01662 0.74 -1.1
1,761,723 - MPMX20_01662 0.74 +0.8
1,761,735 + MPMX20_01662 0.76 +0.5
1,761,735 + MPMX20_01662 0.76 -0.8
1,761,743 - MPMX20_01662 0.77 -2.0
1,761,780 + MPMX20_01662 0.81 -0.5
1,761,875 + -1.1
1,761,880 + +0.4
1,761,900 + -1.3
1,761,900 + +2.4
1,761,905 + -1.5
1,761,913 - +0.9
1,761,963 + -0.5
1,761,971 - -0.6
1,761,993 - +0.3
1,762,003 - +0.8
1,762,039 + +0.8
1,762,049 - -1.7
1,762,074 - -3.8
1,762,074 - +1.4
1,762,172 + MPMX20_01663 0.31 -1.7
1,762,172 + MPMX20_01663 0.31 -1.1
1,762,180 - MPMX20_01663 0.33 -1.6
1,762,180 - MPMX20_01663 0.33 -0.4
1,762,180 - MPMX20_01663 0.33 -0.1
1,762,180 - MPMX20_01663 0.33 +1.2
1,762,181 + MPMX20_01663 0.34 -1.1
1,762,271 + MPMX20_01663 0.57 -0.2
1,762,286 - MPMX20_01663 0.61 -3.4
1,762,298 - MPMX20_01663 0.64 -2.3
1,762,316 + MPMX20_01663 0.68 +1.5
1,762,324 - MPMX20_01663 0.71 -1.2
1,762,346 - MPMX20_01663 0.76 -0.3
1,762,357 - MPMX20_01663 0.79 -0.5
1,762,375 + MPMX20_01663 0.84 +0.6
1,762,381 - MPMX20_01663 0.85 -1.5
1,762,388 - MPMX20_01663 0.87 -0.5
1,762,421 - -0.1
1,762,579 - MPMX20_01664 0.10 -3.1
1,762,623 + MPMX20_01664 0.14 -1.2
1,762,640 - MPMX20_01664 0.15 -2.5
1,762,818 - MPMX20_01664 0.27 +1.7
1,762,863 - MPMX20_01664 0.31 -2.4
1,762,929 - MPMX20_01664 0.35 -0.3

Or see this region's nucleotide sequence