Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01591

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01590 and MPMX20_01591 are separated by 43 nucleotidesMPMX20_01591 and MPMX20_01592 overlap by 4 nucleotidesMPMX20_01592 and MPMX20_01593 are separated by 9 nucleotides MPMX20_01590: MPMX20_01590 - Aminopeptidase N, at 1,678,200 to 1,680,812 _01590 MPMX20_01591: MPMX20_01591 - Aliphatic sulfonates import ATP-binding protein SsuB, at 1,680,856 to 1,681,626 _01591 MPMX20_01592: MPMX20_01592 - Putative aliphatic sulfonates transport permease protein SsuC, at 1,681,623 to 1,682,414 _01592 MPMX20_01593: MPMX20_01593 - Alkanesulfonate monooxygenase, at 1,682,424 to 1,683,569 _01593 Position (kb) 1680 1681 1682Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1679.901 kb on + strand, within MPMX20_01590at 1679.923 kb on + strand, within MPMX20_01590at 1679.962 kb on - strand, within MPMX20_01590at 1680.003 kb on + strand, within MPMX20_01590at 1680.020 kb on + strand, within MPMX20_01590at 1680.028 kb on - strand, within MPMX20_01590at 1680.081 kb on + strand, within MPMX20_01590at 1680.081 kb on - strand, within MPMX20_01590at 1680.119 kb on + strand, within MPMX20_01590at 1680.133 kb on + strand, within MPMX20_01590at 1680.134 kb on - strand, within MPMX20_01590at 1680.239 kb on + strand, within MPMX20_01590at 1680.239 kb on + strand, within MPMX20_01590at 1680.239 kb on + strand, within MPMX20_01590at 1680.239 kb on - strand, within MPMX20_01590at 1680.247 kb on - strand, within MPMX20_01590at 1680.323 kb on + strand, within MPMX20_01590at 1680.374 kb on + strand, within MPMX20_01590at 1680.408 kb on + strand, within MPMX20_01590at 1680.458 kb on + strand, within MPMX20_01590at 1680.480 kb on + strand, within MPMX20_01590at 1680.488 kb on - strand, within MPMX20_01590at 1680.517 kb on + strand, within MPMX20_01590at 1680.600 kb on - strandat 1680.649 kb on + strandat 1680.657 kb on - strandat 1680.657 kb on - strandat 1680.711 kb on + strandat 1680.714 kb on - strandat 1680.757 kb on - strandat 1680.801 kb on + strandat 1680.847 kb on + strandat 1680.867 kb on - strandat 1680.918 kb on - strandat 1680.923 kb on + strandat 1680.951 kb on - strand, within MPMX20_01591at 1680.961 kb on - strand, within MPMX20_01591at 1681.058 kb on - strand, within MPMX20_01591at 1681.135 kb on + strand, within MPMX20_01591at 1681.165 kb on + strand, within MPMX20_01591at 1681.195 kb on + strand, within MPMX20_01591at 1681.212 kb on + strand, within MPMX20_01591at 1681.228 kb on - strand, within MPMX20_01591at 1681.314 kb on + strand, within MPMX20_01591at 1681.346 kb on - strand, within MPMX20_01591at 1681.407 kb on - strand, within MPMX20_01591at 1681.443 kb on + strand, within MPMX20_01591at 1681.462 kb on + strand, within MPMX20_01591at 1681.580 kb on + strandat 1681.588 kb on - strandat 1681.588 kb on - strandat 1681.596 kb on - strandat 1681.619 kb on - strandat 1681.837 kb on - strand, within MPMX20_01592at 1681.838 kb on + strand, within MPMX20_01592at 1681.893 kb on - strand, within MPMX20_01592at 1681.928 kb on + strand, within MPMX20_01592at 1681.928 kb on + strand, within MPMX20_01592at 1681.928 kb on + strand, within MPMX20_01592at 1681.930 kb on + strand, within MPMX20_01592at 1681.936 kb on - strand, within MPMX20_01592at 1681.936 kb on - strand, within MPMX20_01592at 1681.936 kb on - strand, within MPMX20_01592at 1681.936 kb on - strand, within MPMX20_01592at 1681.936 kb on - strand, within MPMX20_01592at 1681.953 kb on - strand, within MPMX20_01592at 1682.007 kb on + strand, within MPMX20_01592at 1682.008 kb on + strand, within MPMX20_01592at 1682.009 kb on + strand, within MPMX20_01592at 1682.015 kb on - strand, within MPMX20_01592at 1682.016 kb on - strand, within MPMX20_01592at 1682.016 kb on - strand, within MPMX20_01592at 1682.016 kb on - strand, within MPMX20_01592at 1682.157 kb on + strand, within MPMX20_01592at 1682.243 kb on - strand, within MPMX20_01592at 1682.276 kb on + strand, within MPMX20_01592at 1682.285 kb on + strand, within MPMX20_01592at 1682.300 kb on + strand, within MPMX20_01592at 1682.362 kb on + strandat 1682.420 kb on + strandat 1682.422 kb on + strandat 1682.427 kb on + strandat 1682.430 kb on - strandat 1682.430 kb on - strandat 1682.512 kb on - strandat 1682.601 kb on + strand, within MPMX20_01593at 1682.601 kb on + strand, within MPMX20_01593

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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1,679,901 + MPMX20_01590 0.65 +2.7
1,679,923 + MPMX20_01590 0.66 +1.0
1,679,962 - MPMX20_01590 0.67 +0.0
1,680,003 + MPMX20_01590 0.69 +0.7
1,680,020 + MPMX20_01590 0.70 +2.0
1,680,028 - MPMX20_01590 0.70 -0.2
1,680,081 + MPMX20_01590 0.72 +1.9
1,680,081 - MPMX20_01590 0.72 -2.9
1,680,119 + MPMX20_01590 0.73 -2.6
1,680,133 + MPMX20_01590 0.74 +0.9
1,680,134 - MPMX20_01590 0.74 +0.1
1,680,239 + MPMX20_01590 0.78 +0.4
1,680,239 + MPMX20_01590 0.78 +0.5
1,680,239 + MPMX20_01590 0.78 -0.9
1,680,239 - MPMX20_01590 0.78 -0.6
1,680,247 - MPMX20_01590 0.78 -2.7
1,680,323 + MPMX20_01590 0.81 +0.6
1,680,374 + MPMX20_01590 0.83 -2.6
1,680,408 + MPMX20_01590 0.85 -1.0
1,680,458 + MPMX20_01590 0.86 +0.5
1,680,480 + MPMX20_01590 0.87 +1.2
1,680,488 - MPMX20_01590 0.88 -0.9
1,680,517 + MPMX20_01590 0.89 -0.7
1,680,600 - +0.9
1,680,649 + -0.0
1,680,657 - -0.5
1,680,657 - -0.3
1,680,711 + +0.6
1,680,714 - -0.1
1,680,757 - -0.8
1,680,801 + -1.2
1,680,847 + -2.0
1,680,867 - +1.0
1,680,918 - +0.7
1,680,923 + -1.0
1,680,951 - MPMX20_01591 0.12 -2.2
1,680,961 - MPMX20_01591 0.14 -3.5
1,681,058 - MPMX20_01591 0.26 -3.7
1,681,135 + MPMX20_01591 0.36 -2.5
1,681,165 + MPMX20_01591 0.40 -1.0
1,681,195 + MPMX20_01591 0.44 -2.3
1,681,212 + MPMX20_01591 0.46 -0.6
1,681,228 - MPMX20_01591 0.48 +0.0
1,681,314 + MPMX20_01591 0.59 -0.4
1,681,346 - MPMX20_01591 0.64 -1.2
1,681,407 - MPMX20_01591 0.71 +1.0
1,681,443 + MPMX20_01591 0.76 -2.5
1,681,462 + MPMX20_01591 0.79 -0.4
1,681,580 + +1.8
1,681,588 - +1.0
1,681,588 - -0.2
1,681,596 - +1.3
1,681,619 - +0.5
1,681,837 - MPMX20_01592 0.27 +0.6
1,681,838 + MPMX20_01592 0.27 +0.0
1,681,893 - MPMX20_01592 0.34 +0.2
1,681,928 + MPMX20_01592 0.39 -0.5
1,681,928 + MPMX20_01592 0.39 -0.2
1,681,928 + MPMX20_01592 0.39 +0.2
1,681,930 + MPMX20_01592 0.39 -2.6
1,681,936 - MPMX20_01592 0.40 -2.1
1,681,936 - MPMX20_01592 0.40 +0.6
1,681,936 - MPMX20_01592 0.40 +1.6
1,681,936 - MPMX20_01592 0.40 +4.5
1,681,936 - MPMX20_01592 0.40 -2.3
1,681,953 - MPMX20_01592 0.42 -1.6
1,682,007 + MPMX20_01592 0.48 -0.6
1,682,008 + MPMX20_01592 0.49 +0.4
1,682,009 + MPMX20_01592 0.49 +2.6
1,682,015 - MPMX20_01592 0.49 +0.1
1,682,016 - MPMX20_01592 0.50 -0.9
1,682,016 - MPMX20_01592 0.50 +1.3
1,682,016 - MPMX20_01592 0.50 +0.7
1,682,157 + MPMX20_01592 0.67 +0.6
1,682,243 - MPMX20_01592 0.78 -1.0
1,682,276 + MPMX20_01592 0.82 -3.2
1,682,285 + MPMX20_01592 0.84 -2.8
1,682,300 + MPMX20_01592 0.85 -2.1
1,682,362 + -3.1
1,682,420 + -2.5
1,682,422 + +1.2
1,682,427 + -1.7
1,682,430 - -1.3
1,682,430 - -0.1
1,682,512 - -0.6
1,682,601 + MPMX20_01593 0.15 +1.3
1,682,601 + MPMX20_01593 0.15 +2.6

Or see this region's nucleotide sequence