Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01590 and MPMX20_01591 are separated by 43 nucleotides MPMX20_01591 and MPMX20_01592 overlap by 4 nucleotides MPMX20_01592 and MPMX20_01593 are separated by 9 nucleotides
MPMX20_01590: MPMX20_01590 - Aminopeptidase N, at 1,678,200 to 1,680,812
_01590
MPMX20_01591: MPMX20_01591 - Aliphatic sulfonates import ATP-binding protein SsuB, at 1,680,856 to 1,681,626
_01591
MPMX20_01592: MPMX20_01592 - Putative aliphatic sulfonates transport permease protein SsuC, at 1,681,623 to 1,682,414
_01592
MPMX20_01593: MPMX20_01593 - Alkanesulfonate monooxygenase, at 1,682,424 to 1,683,569
_01593
Position (kb)
1680
1681
1682 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1679.901 kb on + strand, within MPMX20_01590 at 1679.923 kb on + strand, within MPMX20_01590 at 1679.962 kb on - strand, within MPMX20_01590 at 1680.003 kb on + strand, within MPMX20_01590 at 1680.020 kb on + strand, within MPMX20_01590 at 1680.028 kb on - strand, within MPMX20_01590 at 1680.081 kb on + strand, within MPMX20_01590 at 1680.081 kb on - strand, within MPMX20_01590 at 1680.119 kb on + strand, within MPMX20_01590 at 1680.133 kb on + strand, within MPMX20_01590 at 1680.134 kb on - strand, within MPMX20_01590 at 1680.239 kb on + strand, within MPMX20_01590 at 1680.239 kb on + strand, within MPMX20_01590 at 1680.239 kb on + strand, within MPMX20_01590 at 1680.239 kb on - strand, within MPMX20_01590 at 1680.247 kb on - strand, within MPMX20_01590 at 1680.323 kb on + strand, within MPMX20_01590 at 1680.374 kb on + strand, within MPMX20_01590 at 1680.408 kb on + strand, within MPMX20_01590 at 1680.458 kb on + strand, within MPMX20_01590 at 1680.480 kb on + strand, within MPMX20_01590 at 1680.488 kb on - strand, within MPMX20_01590 at 1680.517 kb on + strand, within MPMX20_01590 at 1680.600 kb on - strand at 1680.649 kb on + strand at 1680.657 kb on - strand at 1680.657 kb on - strand at 1680.711 kb on + strand at 1680.714 kb on - strand at 1680.757 kb on - strand at 1680.801 kb on + strand at 1680.847 kb on + strand at 1680.867 kb on - strand at 1680.918 kb on - strand at 1680.923 kb on + strand at 1680.951 kb on - strand, within MPMX20_01591 at 1680.961 kb on - strand, within MPMX20_01591 at 1681.058 kb on - strand, within MPMX20_01591 at 1681.135 kb on + strand, within MPMX20_01591 at 1681.165 kb on + strand, within MPMX20_01591 at 1681.195 kb on + strand, within MPMX20_01591 at 1681.212 kb on + strand, within MPMX20_01591 at 1681.228 kb on - strand, within MPMX20_01591 at 1681.314 kb on + strand, within MPMX20_01591 at 1681.346 kb on - strand, within MPMX20_01591 at 1681.407 kb on - strand, within MPMX20_01591 at 1681.443 kb on + strand, within MPMX20_01591 at 1681.462 kb on + strand, within MPMX20_01591 at 1681.580 kb on + strand at 1681.588 kb on - strand at 1681.588 kb on - strand at 1681.596 kb on - strand at 1681.619 kb on - strand at 1681.837 kb on - strand, within MPMX20_01592 at 1681.838 kb on + strand, within MPMX20_01592 at 1681.893 kb on - strand, within MPMX20_01592 at 1681.928 kb on + strand, within MPMX20_01592 at 1681.928 kb on + strand, within MPMX20_01592 at 1681.928 kb on + strand, within MPMX20_01592 at 1681.930 kb on + strand, within MPMX20_01592 at 1681.936 kb on - strand, within MPMX20_01592 at 1681.936 kb on - strand, within MPMX20_01592 at 1681.936 kb on - strand, within MPMX20_01592 at 1681.936 kb on - strand, within MPMX20_01592 at 1681.936 kb on - strand, within MPMX20_01592 at 1681.953 kb on - strand, within MPMX20_01592 at 1682.007 kb on + strand, within MPMX20_01592 at 1682.008 kb on + strand, within MPMX20_01592 at 1682.009 kb on + strand, within MPMX20_01592 at 1682.015 kb on - strand, within MPMX20_01592 at 1682.016 kb on - strand, within MPMX20_01592 at 1682.016 kb on - strand, within MPMX20_01592 at 1682.016 kb on - strand, within MPMX20_01592 at 1682.157 kb on + strand, within MPMX20_01592 at 1682.243 kb on - strand, within MPMX20_01592 at 1682.276 kb on + strand, within MPMX20_01592 at 1682.285 kb on + strand, within MPMX20_01592 at 1682.300 kb on + strand, within MPMX20_01592 at 1682.362 kb on + strand at 1682.420 kb on + strand at 1682.422 kb on + strand at 1682.427 kb on + strand at 1682.430 kb on - strand at 1682.430 kb on - strand at 1682.512 kb on - strand at 1682.601 kb on + strand, within MPMX20_01593 at 1682.601 kb on + strand, within MPMX20_01593
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 1,679,901 + MPMX20_01590 0.65 +2.7 1,679,923 + MPMX20_01590 0.66 +1.0 1,679,962 - MPMX20_01590 0.67 +0.0 1,680,003 + MPMX20_01590 0.69 +0.7 1,680,020 + MPMX20_01590 0.70 +2.0 1,680,028 - MPMX20_01590 0.70 -0.2 1,680,081 + MPMX20_01590 0.72 +1.9 1,680,081 - MPMX20_01590 0.72 -2.9 1,680,119 + MPMX20_01590 0.73 -2.6 1,680,133 + MPMX20_01590 0.74 +0.9 1,680,134 - MPMX20_01590 0.74 +0.1 1,680,239 + MPMX20_01590 0.78 +0.4 1,680,239 + MPMX20_01590 0.78 +0.5 1,680,239 + MPMX20_01590 0.78 -0.9 1,680,239 - MPMX20_01590 0.78 -0.6 1,680,247 - MPMX20_01590 0.78 -2.7 1,680,323 + MPMX20_01590 0.81 +0.6 1,680,374 + MPMX20_01590 0.83 -2.6 1,680,408 + MPMX20_01590 0.85 -1.0 1,680,458 + MPMX20_01590 0.86 +0.5 1,680,480 + MPMX20_01590 0.87 +1.2 1,680,488 - MPMX20_01590 0.88 -0.9 1,680,517 + MPMX20_01590 0.89 -0.7 1,680,600 - +0.9 1,680,649 + -0.0 1,680,657 - -0.5 1,680,657 - -0.3 1,680,711 + +0.6 1,680,714 - -0.1 1,680,757 - -0.8 1,680,801 + -1.2 1,680,847 + -2.0 1,680,867 - +1.0 1,680,918 - +0.7 1,680,923 + -1.0 1,680,951 - MPMX20_01591 0.12 -2.2 1,680,961 - MPMX20_01591 0.14 -3.5 1,681,058 - MPMX20_01591 0.26 -3.7 1,681,135 + MPMX20_01591 0.36 -2.5 1,681,165 + MPMX20_01591 0.40 -1.0 1,681,195 + MPMX20_01591 0.44 -2.3 1,681,212 + MPMX20_01591 0.46 -0.6 1,681,228 - MPMX20_01591 0.48 +0.0 1,681,314 + MPMX20_01591 0.59 -0.4 1,681,346 - MPMX20_01591 0.64 -1.2 1,681,407 - MPMX20_01591 0.71 +1.0 1,681,443 + MPMX20_01591 0.76 -2.5 1,681,462 + MPMX20_01591 0.79 -0.4 1,681,580 + +1.8 1,681,588 - +1.0 1,681,588 - -0.2 1,681,596 - +1.3 1,681,619 - +0.5 1,681,837 - MPMX20_01592 0.27 +0.6 1,681,838 + MPMX20_01592 0.27 +0.0 1,681,893 - MPMX20_01592 0.34 +0.2 1,681,928 + MPMX20_01592 0.39 -0.5 1,681,928 + MPMX20_01592 0.39 -0.2 1,681,928 + MPMX20_01592 0.39 +0.2 1,681,930 + MPMX20_01592 0.39 -2.6 1,681,936 - MPMX20_01592 0.40 -2.1 1,681,936 - MPMX20_01592 0.40 +0.6 1,681,936 - MPMX20_01592 0.40 +1.6 1,681,936 - MPMX20_01592 0.40 +4.5 1,681,936 - MPMX20_01592 0.40 -2.3 1,681,953 - MPMX20_01592 0.42 -1.6 1,682,007 + MPMX20_01592 0.48 -0.6 1,682,008 + MPMX20_01592 0.49 +0.4 1,682,009 + MPMX20_01592 0.49 +2.6 1,682,015 - MPMX20_01592 0.49 +0.1 1,682,016 - MPMX20_01592 0.50 -0.9 1,682,016 - MPMX20_01592 0.50 +1.3 1,682,016 - MPMX20_01592 0.50 +0.7 1,682,157 + MPMX20_01592 0.67 +0.6 1,682,243 - MPMX20_01592 0.78 -1.0 1,682,276 + MPMX20_01592 0.82 -3.2 1,682,285 + MPMX20_01592 0.84 -2.8 1,682,300 + MPMX20_01592 0.85 -2.1 1,682,362 + -3.1 1,682,420 + -2.5 1,682,422 + +1.2 1,682,427 + -1.7 1,682,430 - -1.3 1,682,430 - -0.1 1,682,512 - -0.6 1,682,601 + MPMX20_01593 0.15 +1.3 1,682,601 + MPMX20_01593 0.15 +2.6
Or see this region's nucleotide sequence