Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01426 and MPMX20_01427 overlap by 14 nucleotides MPMX20_01427 and MPMX20_01428 are separated by 5 nucleotides
MPMX20_01426: MPMX20_01426 - ATP-dependent DNA helicase DinG, at 1,489,420 to 1,491,597
_01426
MPMX20_01427: MPMX20_01427 - Protein FimG, at 1,491,584 to 1,492,087
_01427
MPMX20_01428: MPMX20_01428 - hypothetical protein, at 1,492,093 to 1,493,082
_01428
Position (kb)
1491
1492
1493 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1490.593 kb on + strand, within MPMX20_01426 at 1490.785 kb on + strand, within MPMX20_01426 at 1490.900 kb on + strand, within MPMX20_01426 at 1490.908 kb on - strand, within MPMX20_01426 at 1490.908 kb on - strand, within MPMX20_01426 at 1490.936 kb on + strand, within MPMX20_01426 at 1490.970 kb on - strand, within MPMX20_01426 at 1491.001 kb on + strand, within MPMX20_01426 at 1491.009 kb on - strand, within MPMX20_01426 at 1491.115 kb on + strand, within MPMX20_01426 at 1491.147 kb on + strand, within MPMX20_01426 at 1491.191 kb on - strand, within MPMX20_01426 at 1491.337 kb on + strand, within MPMX20_01426 at 1491.407 kb on + strand at 1491.552 kb on + strand at 1491.625 kb on - strand at 1491.681 kb on + strand, within MPMX20_01427 at 1491.709 kb on + strand, within MPMX20_01427 at 1491.718 kb on - strand, within MPMX20_01427 at 1491.773 kb on + strand, within MPMX20_01427 at 1491.783 kb on - strand, within MPMX20_01427 at 1491.883 kb on + strand, within MPMX20_01427 at 1491.948 kb on + strand, within MPMX20_01427 at 1491.984 kb on + strand, within MPMX20_01427 at 1492.039 kb on + strand at 1492.105 kb on - strand at 1492.132 kb on - strand at 1492.134 kb on + strand at 1492.142 kb on - strand at 1492.142 kb on - strand at 1492.151 kb on + strand at 1492.151 kb on + strand at 1492.151 kb on + strand at 1492.151 kb on + strand at 1492.169 kb on - strand at 1492.356 kb on + strand, within MPMX20_01428 at 1492.356 kb on + strand, within MPMX20_01428 at 1492.356 kb on + strand, within MPMX20_01428 at 1492.356 kb on + strand, within MPMX20_01428 at 1492.363 kb on - strand, within MPMX20_01428 at 1492.364 kb on - strand, within MPMX20_01428 at 1492.364 kb on - strand, within MPMX20_01428 at 1492.364 kb on - strand, within MPMX20_01428 at 1492.375 kb on - strand, within MPMX20_01428 at 1492.415 kb on + strand, within MPMX20_01428 at 1492.415 kb on + strand, within MPMX20_01428 at 1492.423 kb on - strand, within MPMX20_01428 at 1492.428 kb on - strand, within MPMX20_01428 at 1492.436 kb on - strand, within MPMX20_01428 at 1492.491 kb on + strand, within MPMX20_01428 at 1492.491 kb on + strand, within MPMX20_01428 at 1492.491 kb on + strand, within MPMX20_01428 at 1492.499 kb on - strand, within MPMX20_01428 at 1492.499 kb on - strand, within MPMX20_01428 at 1492.499 kb on - strand, within MPMX20_01428 at 1492.559 kb on + strand, within MPMX20_01428 at 1492.586 kb on + strand, within MPMX20_01428 at 1492.644 kb on + strand, within MPMX20_01428 at 1492.644 kb on + strand, within MPMX20_01428 at 1492.694 kb on + strand, within MPMX20_01428 at 1492.696 kb on + strand, within MPMX20_01428 at 1492.696 kb on + strand, within MPMX20_01428 at 1492.704 kb on - strand, within MPMX20_01428 at 1492.704 kb on - strand, within MPMX20_01428 at 1492.704 kb on - strand, within MPMX20_01428 at 1492.704 kb on - strand, within MPMX20_01428 at 1492.760 kb on + strand, within MPMX20_01428 at 1492.770 kb on + strand, within MPMX20_01428 at 1492.778 kb on - strand, within MPMX20_01428 at 1492.804 kb on - strand, within MPMX20_01428 at 1492.825 kb on + strand, within MPMX20_01428 at 1492.825 kb on + strand, within MPMX20_01428 at 1492.825 kb on + strand, within MPMX20_01428 at 1492.830 kb on + strand, within MPMX20_01428 at 1492.833 kb on - strand, within MPMX20_01428 at 1492.833 kb on - strand, within MPMX20_01428 at 1492.854 kb on - strand, within MPMX20_01428 at 1492.872 kb on - strand, within MPMX20_01428 at 1492.878 kb on + strand, within MPMX20_01428 at 1492.878 kb on + strand, within MPMX20_01428 at 1492.886 kb on - strand, within MPMX20_01428 at 1492.886 kb on - strand, within MPMX20_01428 at 1492.906 kb on + strand, within MPMX20_01428 at 1492.911 kb on + strand, within MPMX20_01428 at 1492.919 kb on - strand, within MPMX20_01428 at 1492.919 kb on - strand, within MPMX20_01428 at 1492.966 kb on + strand, within MPMX20_01428 at 1493.005 kb on - strand at 1493.018 kb on - strand at 1493.067 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 1,490,593 + MPMX20_01426 0.54 -1.6 1,490,785 + MPMX20_01426 0.63 -2.0 1,490,900 + MPMX20_01426 0.68 -0.2 1,490,908 - MPMX20_01426 0.68 +1.0 1,490,908 - MPMX20_01426 0.68 -2.3 1,490,936 + MPMX20_01426 0.70 -0.5 1,490,970 - MPMX20_01426 0.71 +0.7 1,491,001 + MPMX20_01426 0.73 +1.6 1,491,009 - MPMX20_01426 0.73 +2.4 1,491,115 + MPMX20_01426 0.78 +0.5 1,491,147 + MPMX20_01426 0.79 +0.6 1,491,191 - MPMX20_01426 0.81 -0.8 1,491,337 + MPMX20_01426 0.88 -2.3 1,491,407 + -1.2 1,491,552 + -2.2 1,491,625 - -1.4 1,491,681 + MPMX20_01427 0.19 -1.1 1,491,709 + MPMX20_01427 0.25 -2.4 1,491,718 - MPMX20_01427 0.27 -2.0 1,491,773 + MPMX20_01427 0.38 -1.1 1,491,783 - MPMX20_01427 0.39 -0.6 1,491,883 + MPMX20_01427 0.59 +0.7 1,491,948 + MPMX20_01427 0.72 -3.0 1,491,984 + MPMX20_01427 0.79 -3.4 1,492,039 + -0.1 1,492,105 - -0.7 1,492,132 - -0.1 1,492,134 + +0.2 1,492,142 - -1.5 1,492,142 - -0.6 1,492,151 + -0.5 1,492,151 + +0.5 1,492,151 + +0.9 1,492,151 + +1.0 1,492,169 - -1.1 1,492,356 + MPMX20_01428 0.27 -1.5 1,492,356 + MPMX20_01428 0.27 -0.4 1,492,356 + MPMX20_01428 0.27 +1.1 1,492,356 + MPMX20_01428 0.27 +1.0 1,492,363 - MPMX20_01428 0.27 +0.6 1,492,364 - MPMX20_01428 0.27 +2.9 1,492,364 - MPMX20_01428 0.27 +1.8 1,492,364 - MPMX20_01428 0.27 -3.5 1,492,375 - MPMX20_01428 0.28 -2.2 1,492,415 + MPMX20_01428 0.33 -1.2 1,492,415 + MPMX20_01428 0.33 -2.5 1,492,423 - MPMX20_01428 0.33 +0.7 1,492,428 - MPMX20_01428 0.34 -0.2 1,492,436 - MPMX20_01428 0.35 -0.6 1,492,491 + MPMX20_01428 0.40 -0.6 1,492,491 + MPMX20_01428 0.40 -0.7 1,492,491 + MPMX20_01428 0.40 -0.6 1,492,499 - MPMX20_01428 0.41 -0.0 1,492,499 - MPMX20_01428 0.41 +0.2 1,492,499 - MPMX20_01428 0.41 -1.1 1,492,559 + MPMX20_01428 0.47 -2.1 1,492,586 + MPMX20_01428 0.50 -1.9 1,492,644 + MPMX20_01428 0.56 -1.8 1,492,644 + MPMX20_01428 0.56 -0.2 1,492,694 + MPMX20_01428 0.61 -2.0 1,492,696 + MPMX20_01428 0.61 -0.2 1,492,696 + MPMX20_01428 0.61 -2.1 1,492,704 - MPMX20_01428 0.62 -0.0 1,492,704 - MPMX20_01428 0.62 -0.0 1,492,704 - MPMX20_01428 0.62 -2.1 1,492,704 - MPMX20_01428 0.62 -0.0 1,492,760 + MPMX20_01428 0.67 +0.0 1,492,770 + MPMX20_01428 0.68 +0.6 1,492,778 - MPMX20_01428 0.69 -0.6 1,492,804 - MPMX20_01428 0.72 +1.5 1,492,825 + MPMX20_01428 0.74 -1.5 1,492,825 + MPMX20_01428 0.74 -0.6 1,492,825 + MPMX20_01428 0.74 -1.0 1,492,830 + MPMX20_01428 0.74 +3.3 1,492,833 - MPMX20_01428 0.75 +0.1 1,492,833 - MPMX20_01428 0.75 -0.5 1,492,854 - MPMX20_01428 0.77 +0.6 1,492,872 - MPMX20_01428 0.79 +0.9 1,492,878 + MPMX20_01428 0.79 -2.1 1,492,878 + MPMX20_01428 0.79 +2.4 1,492,886 - MPMX20_01428 0.80 +1.7 1,492,886 - MPMX20_01428 0.80 -2.1 1,492,906 + MPMX20_01428 0.82 -0.4 1,492,911 + MPMX20_01428 0.83 -0.1 1,492,919 - MPMX20_01428 0.83 -1.5 1,492,919 - MPMX20_01428 0.83 +1.4 1,492,966 + MPMX20_01428 0.88 -0.8 1,493,005 - -0.1 1,493,018 - +0.1 1,493,067 + -1.6
Or see this region's nucleotide sequence