Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01427

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01426 and MPMX20_01427 overlap by 14 nucleotidesMPMX20_01427 and MPMX20_01428 are separated by 5 nucleotides MPMX20_01426: MPMX20_01426 - ATP-dependent DNA helicase DinG, at 1,489,420 to 1,491,597 _01426 MPMX20_01427: MPMX20_01427 - Protein FimG, at 1,491,584 to 1,492,087 _01427 MPMX20_01428: MPMX20_01428 - hypothetical protein, at 1,492,093 to 1,493,082 _01428 Position (kb) 1491 1492 1493Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1490.593 kb on + strand, within MPMX20_01426at 1490.785 kb on + strand, within MPMX20_01426at 1490.900 kb on + strand, within MPMX20_01426at 1490.908 kb on - strand, within MPMX20_01426at 1490.908 kb on - strand, within MPMX20_01426at 1490.936 kb on + strand, within MPMX20_01426at 1490.970 kb on - strand, within MPMX20_01426at 1491.001 kb on + strand, within MPMX20_01426at 1491.009 kb on - strand, within MPMX20_01426at 1491.115 kb on + strand, within MPMX20_01426at 1491.147 kb on + strand, within MPMX20_01426at 1491.191 kb on - strand, within MPMX20_01426at 1491.337 kb on + strand, within MPMX20_01426at 1491.407 kb on + strandat 1491.552 kb on + strandat 1491.625 kb on - strandat 1491.681 kb on + strand, within MPMX20_01427at 1491.709 kb on + strand, within MPMX20_01427at 1491.718 kb on - strand, within MPMX20_01427at 1491.773 kb on + strand, within MPMX20_01427at 1491.783 kb on - strand, within MPMX20_01427at 1491.883 kb on + strand, within MPMX20_01427at 1491.948 kb on + strand, within MPMX20_01427at 1491.984 kb on + strand, within MPMX20_01427at 1492.039 kb on + strandat 1492.105 kb on - strandat 1492.132 kb on - strandat 1492.134 kb on + strandat 1492.142 kb on - strandat 1492.142 kb on - strandat 1492.151 kb on + strandat 1492.151 kb on + strandat 1492.151 kb on + strandat 1492.151 kb on + strandat 1492.169 kb on - strandat 1492.356 kb on + strand, within MPMX20_01428at 1492.356 kb on + strand, within MPMX20_01428at 1492.356 kb on + strand, within MPMX20_01428at 1492.356 kb on + strand, within MPMX20_01428at 1492.363 kb on - strand, within MPMX20_01428at 1492.364 kb on - strand, within MPMX20_01428at 1492.364 kb on - strand, within MPMX20_01428at 1492.364 kb on - strand, within MPMX20_01428at 1492.375 kb on - strand, within MPMX20_01428at 1492.415 kb on + strand, within MPMX20_01428at 1492.415 kb on + strand, within MPMX20_01428at 1492.423 kb on - strand, within MPMX20_01428at 1492.428 kb on - strand, within MPMX20_01428at 1492.436 kb on - strand, within MPMX20_01428at 1492.491 kb on + strand, within MPMX20_01428at 1492.491 kb on + strand, within MPMX20_01428at 1492.491 kb on + strand, within MPMX20_01428at 1492.499 kb on - strand, within MPMX20_01428at 1492.499 kb on - strand, within MPMX20_01428at 1492.499 kb on - strand, within MPMX20_01428at 1492.559 kb on + strand, within MPMX20_01428at 1492.586 kb on + strand, within MPMX20_01428at 1492.644 kb on + strand, within MPMX20_01428at 1492.644 kb on + strand, within MPMX20_01428at 1492.694 kb on + strand, within MPMX20_01428at 1492.696 kb on + strand, within MPMX20_01428at 1492.696 kb on + strand, within MPMX20_01428at 1492.704 kb on - strand, within MPMX20_01428at 1492.704 kb on - strand, within MPMX20_01428at 1492.704 kb on - strand, within MPMX20_01428at 1492.704 kb on - strand, within MPMX20_01428at 1492.760 kb on + strand, within MPMX20_01428at 1492.770 kb on + strand, within MPMX20_01428at 1492.778 kb on - strand, within MPMX20_01428at 1492.804 kb on - strand, within MPMX20_01428at 1492.825 kb on + strand, within MPMX20_01428at 1492.825 kb on + strand, within MPMX20_01428at 1492.825 kb on + strand, within MPMX20_01428at 1492.830 kb on + strand, within MPMX20_01428at 1492.833 kb on - strand, within MPMX20_01428at 1492.833 kb on - strand, within MPMX20_01428at 1492.854 kb on - strand, within MPMX20_01428at 1492.872 kb on - strand, within MPMX20_01428at 1492.878 kb on + strand, within MPMX20_01428at 1492.878 kb on + strand, within MPMX20_01428at 1492.886 kb on - strand, within MPMX20_01428at 1492.886 kb on - strand, within MPMX20_01428at 1492.906 kb on + strand, within MPMX20_01428at 1492.911 kb on + strand, within MPMX20_01428at 1492.919 kb on - strand, within MPMX20_01428at 1492.919 kb on - strand, within MPMX20_01428at 1492.966 kb on + strand, within MPMX20_01428at 1493.005 kb on - strandat 1493.018 kb on - strandat 1493.067 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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1,490,593 + MPMX20_01426 0.54 -1.6
1,490,785 + MPMX20_01426 0.63 -2.0
1,490,900 + MPMX20_01426 0.68 -0.2
1,490,908 - MPMX20_01426 0.68 +1.0
1,490,908 - MPMX20_01426 0.68 -2.3
1,490,936 + MPMX20_01426 0.70 -0.5
1,490,970 - MPMX20_01426 0.71 +0.7
1,491,001 + MPMX20_01426 0.73 +1.6
1,491,009 - MPMX20_01426 0.73 +2.4
1,491,115 + MPMX20_01426 0.78 +0.5
1,491,147 + MPMX20_01426 0.79 +0.6
1,491,191 - MPMX20_01426 0.81 -0.8
1,491,337 + MPMX20_01426 0.88 -2.3
1,491,407 + -1.2
1,491,552 + -2.2
1,491,625 - -1.4
1,491,681 + MPMX20_01427 0.19 -1.1
1,491,709 + MPMX20_01427 0.25 -2.4
1,491,718 - MPMX20_01427 0.27 -2.0
1,491,773 + MPMX20_01427 0.38 -1.1
1,491,783 - MPMX20_01427 0.39 -0.6
1,491,883 + MPMX20_01427 0.59 +0.7
1,491,948 + MPMX20_01427 0.72 -3.0
1,491,984 + MPMX20_01427 0.79 -3.4
1,492,039 + -0.1
1,492,105 - -0.7
1,492,132 - -0.1
1,492,134 + +0.2
1,492,142 - -1.5
1,492,142 - -0.6
1,492,151 + -0.5
1,492,151 + +0.5
1,492,151 + +0.9
1,492,151 + +1.0
1,492,169 - -1.1
1,492,356 + MPMX20_01428 0.27 -1.5
1,492,356 + MPMX20_01428 0.27 -0.4
1,492,356 + MPMX20_01428 0.27 +1.1
1,492,356 + MPMX20_01428 0.27 +1.0
1,492,363 - MPMX20_01428 0.27 +0.6
1,492,364 - MPMX20_01428 0.27 +2.9
1,492,364 - MPMX20_01428 0.27 +1.8
1,492,364 - MPMX20_01428 0.27 -3.5
1,492,375 - MPMX20_01428 0.28 -2.2
1,492,415 + MPMX20_01428 0.33 -1.2
1,492,415 + MPMX20_01428 0.33 -2.5
1,492,423 - MPMX20_01428 0.33 +0.7
1,492,428 - MPMX20_01428 0.34 -0.2
1,492,436 - MPMX20_01428 0.35 -0.6
1,492,491 + MPMX20_01428 0.40 -0.6
1,492,491 + MPMX20_01428 0.40 -0.7
1,492,491 + MPMX20_01428 0.40 -0.6
1,492,499 - MPMX20_01428 0.41 -0.0
1,492,499 - MPMX20_01428 0.41 +0.2
1,492,499 - MPMX20_01428 0.41 -1.1
1,492,559 + MPMX20_01428 0.47 -2.1
1,492,586 + MPMX20_01428 0.50 -1.9
1,492,644 + MPMX20_01428 0.56 -1.8
1,492,644 + MPMX20_01428 0.56 -0.2
1,492,694 + MPMX20_01428 0.61 -2.0
1,492,696 + MPMX20_01428 0.61 -0.2
1,492,696 + MPMX20_01428 0.61 -2.1
1,492,704 - MPMX20_01428 0.62 -0.0
1,492,704 - MPMX20_01428 0.62 -0.0
1,492,704 - MPMX20_01428 0.62 -2.1
1,492,704 - MPMX20_01428 0.62 -0.0
1,492,760 + MPMX20_01428 0.67 +0.0
1,492,770 + MPMX20_01428 0.68 +0.6
1,492,778 - MPMX20_01428 0.69 -0.6
1,492,804 - MPMX20_01428 0.72 +1.5
1,492,825 + MPMX20_01428 0.74 -1.5
1,492,825 + MPMX20_01428 0.74 -0.6
1,492,825 + MPMX20_01428 0.74 -1.0
1,492,830 + MPMX20_01428 0.74 +3.3
1,492,833 - MPMX20_01428 0.75 +0.1
1,492,833 - MPMX20_01428 0.75 -0.5
1,492,854 - MPMX20_01428 0.77 +0.6
1,492,872 - MPMX20_01428 0.79 +0.9
1,492,878 + MPMX20_01428 0.79 -2.1
1,492,878 + MPMX20_01428 0.79 +2.4
1,492,886 - MPMX20_01428 0.80 +1.7
1,492,886 - MPMX20_01428 0.80 -2.1
1,492,906 + MPMX20_01428 0.82 -0.4
1,492,911 + MPMX20_01428 0.83 -0.1
1,492,919 - MPMX20_01428 0.83 -1.5
1,492,919 - MPMX20_01428 0.83 +1.4
1,492,966 + MPMX20_01428 0.88 -0.8
1,493,005 - -0.1
1,493,018 - +0.1
1,493,067 + -1.6

Or see this region's nucleotide sequence