Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01355 and MPMX20_01356 are separated by 85 nucleotides MPMX20_01356 and MPMX20_01357 overlap by 1 nucleotides MPMX20_01357 and MPMX20_01358 are separated by 83 nucleotides
MPMX20_01355: MPMX20_01355 - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, at 1,420,039 to 1,421,265
_01355
MPMX20_01356: MPMX20_01356 - Succinate--CoA ligase [ADP-forming] subunit beta, at 1,421,351 to 1,422,517
_01356
MPMX20_01357: MPMX20_01357 - Succinate--CoA ligase [ADP-forming] subunit alpha, at 1,422,517 to 1,423,386
_01357
MPMX20_01358: MPMX20_01358 - Mannosyl-D-glycerate transport/metabolism system repressor MngR, at 1,423,470 to 1,424,186
_01358
Position (kb)
1421
1422
1423 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1421.131 kb on + strand, within MPMX20_01355 at 1421.163 kb on + strand at 1421.348 kb on - strand at 1421.348 kb on - strand at 1421.424 kb on + strand at 1421.429 kb on + strand at 1421.432 kb on - strand at 1421.432 kb on - strand at 1421.432 kb on - strand at 1421.437 kb on - strand at 1421.488 kb on + strand, within MPMX20_01356 at 1421.526 kb on + strand, within MPMX20_01356 at 1421.526 kb on + strand, within MPMX20_01356 at 1421.534 kb on - strand, within MPMX20_01356 at 1421.693 kb on - strand, within MPMX20_01356 at 1421.769 kb on + strand, within MPMX20_01356 at 1421.935 kb on + strand, within MPMX20_01356 at 1421.961 kb on - strand, within MPMX20_01356 at 1421.966 kb on - strand, within MPMX20_01356 at 1422.009 kb on + strand, within MPMX20_01356 at 1422.063 kb on - strand, within MPMX20_01356 at 1422.094 kb on - strand, within MPMX20_01356 at 1422.095 kb on + strand, within MPMX20_01356 at 1422.100 kb on + strand, within MPMX20_01356 at 1422.113 kb on - strand, within MPMX20_01356 at 1422.149 kb on + strand, within MPMX20_01356 at 1422.149 kb on + strand, within MPMX20_01356 at 1422.174 kb on + strand, within MPMX20_01356 at 1422.174 kb on + strand, within MPMX20_01356 at 1422.184 kb on + strand, within MPMX20_01356 at 1422.222 kb on - strand, within MPMX20_01356 at 1422.230 kb on + strand, within MPMX20_01356 at 1422.238 kb on - strand, within MPMX20_01356 at 1422.280 kb on + strand, within MPMX20_01356 at 1422.280 kb on + strand, within MPMX20_01356 at 1422.280 kb on + strand, within MPMX20_01356 at 1422.288 kb on - strand, within MPMX20_01356 at 1422.375 kb on + strand, within MPMX20_01356 at 1422.409 kb on - strand at 1422.416 kb on - strand at 1422.506 kb on - strand at 1422.540 kb on + strand at 1422.561 kb on - strand at 1422.675 kb on + strand, within MPMX20_01357 at 1422.675 kb on + strand, within MPMX20_01357 at 1422.695 kb on + strand, within MPMX20_01357 at 1422.800 kb on - strand, within MPMX20_01357 at 1422.800 kb on - strand, within MPMX20_01357 at 1422.857 kb on + strand, within MPMX20_01357 at 1422.885 kb on - strand, within MPMX20_01357 at 1422.902 kb on + strand, within MPMX20_01357 at 1422.910 kb on - strand, within MPMX20_01357 at 1423.116 kb on + strand, within MPMX20_01357 at 1423.253 kb on - strand, within MPMX20_01357 at 1423.292 kb on - strand, within MPMX20_01357 at 1423.391 kb on + strand at 1423.403 kb on + strand at 1423.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 1,421,131 + MPMX20_01355 0.89 -1.1 1,421,163 + -0.1 1,421,348 - +0.5 1,421,348 - +0.5 1,421,424 + -1.9 1,421,429 + -0.1 1,421,432 - -2.7 1,421,432 - -2.9 1,421,432 - -2.5 1,421,437 - -1.6 1,421,488 + MPMX20_01356 0.12 -1.8 1,421,526 + MPMX20_01356 0.15 -1.9 1,421,526 + MPMX20_01356 0.15 -0.2 1,421,534 - MPMX20_01356 0.16 -1.1 1,421,693 - MPMX20_01356 0.29 -1.2 1,421,769 + MPMX20_01356 0.36 +1.5 1,421,935 + MPMX20_01356 0.50 +0.4 1,421,961 - MPMX20_01356 0.52 -1.5 1,421,966 - MPMX20_01356 0.53 -3.3 1,422,009 + MPMX20_01356 0.56 +0.2 1,422,063 - MPMX20_01356 0.61 -2.1 1,422,094 - MPMX20_01356 0.64 -0.9 1,422,095 + MPMX20_01356 0.64 -2.2 1,422,100 + MPMX20_01356 0.64 -2.5 1,422,113 - MPMX20_01356 0.65 -2.0 1,422,149 + MPMX20_01356 0.68 +1.3 1,422,149 + MPMX20_01356 0.68 -1.2 1,422,174 + MPMX20_01356 0.71 -0.1 1,422,174 + MPMX20_01356 0.71 -0.0 1,422,184 + MPMX20_01356 0.71 -2.4 1,422,222 - MPMX20_01356 0.75 -3.5 1,422,230 + MPMX20_01356 0.75 -0.9 1,422,238 - MPMX20_01356 0.76 -1.5 1,422,280 + MPMX20_01356 0.80 +1.8 1,422,280 + MPMX20_01356 0.80 -1.3 1,422,280 + MPMX20_01356 0.80 -1.1 1,422,288 - MPMX20_01356 0.80 +2.5 1,422,375 + MPMX20_01356 0.88 -3.0 1,422,409 - -0.5 1,422,416 - -0.3 1,422,506 - +0.9 1,422,540 + -2.6 1,422,561 - -1.8 1,422,675 + MPMX20_01357 0.18 -2.9 1,422,675 + MPMX20_01357 0.18 -0.6 1,422,695 + MPMX20_01357 0.20 -2.2 1,422,800 - MPMX20_01357 0.33 -2.9 1,422,800 - MPMX20_01357 0.33 -2.4 1,422,857 + MPMX20_01357 0.39 -1.3 1,422,885 - MPMX20_01357 0.42 -2.6 1,422,902 + MPMX20_01357 0.44 -1.6 1,422,910 - MPMX20_01357 0.45 -0.9 1,423,116 + MPMX20_01357 0.69 -0.5 1,423,253 - MPMX20_01357 0.85 -1.5 1,423,292 - MPMX20_01357 0.89 -1.6 1,423,391 + -0.5 1,423,403 + +1.1 1,423,409 - -2.3
Or see this region's nucleotide sequence