Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01354

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01352 and MPMX20_01353 are separated by 15 nucleotidesMPMX20_01353 and MPMX20_01354 are separated by 226 nucleotidesMPMX20_01354 and MPMX20_01355 are separated by 14 nucleotides MPMX20_01352: MPMX20_01352 - Succinate dehydrogenase flavoprotein subunit, at 1,414,492 to 1,416,258 _01352 MPMX20_01353: MPMX20_01353 - Succinate dehydrogenase iron-sulfur subunit, at 1,416,274 to 1,416,990 _01353 MPMX20_01354: MPMX20_01354 - 2-oxoglutarate dehydrogenase E1 component, at 1,417,217 to 1,420,024 _01354 MPMX20_01355: MPMX20_01355 - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, at 1,420,039 to 1,421,265 _01355 Position (kb) 1417 1418 1419 1420 1421Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1416.386 kb on + strand, within MPMX20_01353at 1416.394 kb on - strand, within MPMX20_01353at 1416.446 kb on - strand, within MPMX20_01353at 1416.492 kb on + strand, within MPMX20_01353at 1416.514 kb on + strand, within MPMX20_01353at 1416.680 kb on + strand, within MPMX20_01353at 1416.680 kb on + strand, within MPMX20_01353at 1416.707 kb on + strand, within MPMX20_01353at 1416.724 kb on - strand, within MPMX20_01353at 1416.724 kb on - strand, within MPMX20_01353at 1416.762 kb on - strand, within MPMX20_01353at 1416.836 kb on - strand, within MPMX20_01353at 1416.914 kb on + strand, within MPMX20_01353at 1416.919 kb on + strandat 1416.920 kb on + strandat 1416.970 kb on - strandat 1416.983 kb on + strandat 1416.990 kb on + strandat 1417.020 kb on + strandat 1417.020 kb on + strandat 1417.020 kb on + strandat 1417.022 kb on - strandat 1417.027 kb on - strandat 1417.028 kb on - strandat 1417.039 kb on + strandat 1417.040 kb on - strandat 1419.439 kb on + strand, within MPMX20_01354at 1419.439 kb on + strand, within MPMX20_01354at 1419.490 kb on + strand, within MPMX20_01354at 1419.581 kb on + strand, within MPMX20_01354at 1419.586 kb on + strand, within MPMX20_01354at 1419.586 kb on + strand, within MPMX20_01354at 1419.959 kb on + strandat 1419.992 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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1,416,386 + MPMX20_01353 0.16 -1.7
1,416,394 - MPMX20_01353 0.17 +0.2
1,416,446 - MPMX20_01353 0.24 +0.5
1,416,492 + MPMX20_01353 0.30 -2.9
1,416,514 + MPMX20_01353 0.33 -1.9
1,416,680 + MPMX20_01353 0.57 -1.6
1,416,680 + MPMX20_01353 0.57 -0.9
1,416,707 + MPMX20_01353 0.60 -1.3
1,416,724 - MPMX20_01353 0.63 -0.6
1,416,724 - MPMX20_01353 0.63 -0.3
1,416,762 - MPMX20_01353 0.68 -1.8
1,416,836 - MPMX20_01353 0.78 -2.4
1,416,914 + MPMX20_01353 0.89 -1.8
1,416,919 + -0.3
1,416,920 + -1.2
1,416,970 - -2.8
1,416,983 + +0.8
1,416,990 + +1.9
1,417,020 + +3.3
1,417,020 + -2.3
1,417,020 + +0.4
1,417,022 - -0.1
1,417,027 - -0.9
1,417,028 - -2.2
1,417,039 + -0.7
1,417,040 - -0.8
1,419,439 + MPMX20_01354 0.79 +0.5
1,419,439 + MPMX20_01354 0.79 -2.1
1,419,490 + MPMX20_01354 0.81 -1.6
1,419,581 + MPMX20_01354 0.84 -0.3
1,419,586 + MPMX20_01354 0.84 +1.5
1,419,586 + MPMX20_01354 0.84 +0.9
1,419,959 + -1.5
1,419,992 + -0.9

Or see this region's nucleotide sequence