Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01352

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01350 and MPMX20_01351 overlap by 7 nucleotidesMPMX20_01351 and MPMX20_01352 overlap by 1 nucleotidesMPMX20_01352 and MPMX20_01353 are separated by 15 nucleotidesMPMX20_01353 and MPMX20_01354 are separated by 226 nucleotides MPMX20_01350: MPMX20_01350 - Succinate dehydrogenase cytochrome b556 subunit, at 1,413,663 to 1,414,151 _01350 MPMX20_01351: MPMX20_01351 - Succinate dehydrogenase hydrophobic membrane anchor subunit, at 1,414,145 to 1,414,492 _01351 MPMX20_01352: MPMX20_01352 - Succinate dehydrogenase flavoprotein subunit, at 1,414,492 to 1,416,258 _01352 MPMX20_01353: MPMX20_01353 - Succinate dehydrogenase iron-sulfur subunit, at 1,416,274 to 1,416,990 _01353 MPMX20_01354: MPMX20_01354 - 2-oxoglutarate dehydrogenase E1 component, at 1,417,217 to 1,420,024 _01354 Position (kb) 1414 1415 1416 1417Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1413.597 kb on + strandat 1413.609 kb on + strandat 1413.734 kb on + strand, within MPMX20_01350at 1413.837 kb on - strand, within MPMX20_01350at 1413.901 kb on - strand, within MPMX20_01350at 1413.936 kb on + strand, within MPMX20_01350at 1413.944 kb on - strand, within MPMX20_01350at 1413.944 kb on - strand, within MPMX20_01350at 1413.951 kb on + strand, within MPMX20_01350at 1414.062 kb on - strand, within MPMX20_01350at 1414.077 kb on + strand, within MPMX20_01350at 1414.201 kb on - strand, within MPMX20_01351at 1414.234 kb on - strand, within MPMX20_01351at 1414.328 kb on - strand, within MPMX20_01351at 1414.378 kb on + strand, within MPMX20_01351at 1414.408 kb on - strand, within MPMX20_01351at 1414.418 kb on + strand, within MPMX20_01351at 1414.429 kb on + strand, within MPMX20_01351at 1414.485 kb on - strandat 1414.485 kb on - strandat 1414.485 kb on - strandat 1414.554 kb on - strandat 1414.554 kb on - strandat 1414.628 kb on - strandat 1414.652 kb on + strandat 1414.652 kb on + strandat 1414.654 kb on - strandat 1414.660 kb on - strandat 1414.662 kb on + strandat 1414.687 kb on + strand, within MPMX20_01352at 1414.690 kb on - strand, within MPMX20_01352at 1414.715 kb on - strand, within MPMX20_01352at 1414.715 kb on - strand, within MPMX20_01352at 1414.916 kb on + strand, within MPMX20_01352at 1414.924 kb on - strand, within MPMX20_01352at 1415.020 kb on + strand, within MPMX20_01352at 1415.028 kb on - strand, within MPMX20_01352at 1415.028 kb on - strand, within MPMX20_01352at 1415.030 kb on + strand, within MPMX20_01352at 1415.038 kb on - strand, within MPMX20_01352at 1415.038 kb on - strand, within MPMX20_01352at 1415.048 kb on - strand, within MPMX20_01352at 1415.066 kb on + strand, within MPMX20_01352at 1415.156 kb on + strand, within MPMX20_01352at 1415.162 kb on + strand, within MPMX20_01352at 1415.163 kb on - strand, within MPMX20_01352at 1415.323 kb on - strand, within MPMX20_01352at 1415.353 kb on - strand, within MPMX20_01352at 1415.353 kb on - strand, within MPMX20_01352at 1415.490 kb on + strand, within MPMX20_01352at 1415.490 kb on + strand, within MPMX20_01352at 1415.613 kb on + strand, within MPMX20_01352at 1415.621 kb on - strand, within MPMX20_01352at 1415.621 kb on - strand, within MPMX20_01352at 1415.746 kb on - strand, within MPMX20_01352at 1415.786 kb on - strand, within MPMX20_01352at 1415.826 kb on - strand, within MPMX20_01352at 1415.826 kb on - strand, within MPMX20_01352at 1415.947 kb on - strand, within MPMX20_01352at 1415.957 kb on - strand, within MPMX20_01352at 1415.996 kb on + strand, within MPMX20_01352at 1416.014 kb on - strand, within MPMX20_01352at 1416.014 kb on - strand, within MPMX20_01352at 1416.014 kb on - strand, within MPMX20_01352at 1416.037 kb on - strand, within MPMX20_01352at 1416.067 kb on + strand, within MPMX20_01352at 1416.091 kb on + strandat 1416.099 kb on - strandat 1416.386 kb on + strand, within MPMX20_01353at 1416.394 kb on - strand, within MPMX20_01353at 1416.446 kb on - strand, within MPMX20_01353at 1416.492 kb on + strand, within MPMX20_01353at 1416.514 kb on + strand, within MPMX20_01353at 1416.680 kb on + strand, within MPMX20_01353at 1416.680 kb on + strand, within MPMX20_01353at 1416.707 kb on + strand, within MPMX20_01353at 1416.724 kb on - strand, within MPMX20_01353at 1416.724 kb on - strand, within MPMX20_01353at 1416.762 kb on - strand, within MPMX20_01353at 1416.836 kb on - strand, within MPMX20_01353at 1416.914 kb on + strand, within MPMX20_01353at 1416.919 kb on + strandat 1416.920 kb on + strandat 1416.970 kb on - strandat 1416.983 kb on + strandat 1416.990 kb on + strandat 1417.020 kb on + strandat 1417.020 kb on + strandat 1417.020 kb on + strandat 1417.022 kb on - strandat 1417.027 kb on - strandat 1417.028 kb on - strandat 1417.039 kb on + strandat 1417.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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1,413,597 + -1.9
1,413,609 + -2.5
1,413,734 + MPMX20_01350 0.15 +0.5
1,413,837 - MPMX20_01350 0.36 -3.1
1,413,901 - MPMX20_01350 0.49 -0.3
1,413,936 + MPMX20_01350 0.56 -1.7
1,413,944 - MPMX20_01350 0.57 -1.2
1,413,944 - MPMX20_01350 0.57 -2.4
1,413,951 + MPMX20_01350 0.59 -0.8
1,414,062 - MPMX20_01350 0.82 -1.9
1,414,077 + MPMX20_01350 0.85 -0.9
1,414,201 - MPMX20_01351 0.16 +2.5
1,414,234 - MPMX20_01351 0.26 -0.8
1,414,328 - MPMX20_01351 0.53 -0.3
1,414,378 + MPMX20_01351 0.67 -3.0
1,414,408 - MPMX20_01351 0.76 +1.1
1,414,418 + MPMX20_01351 0.78 -2.1
1,414,429 + MPMX20_01351 0.82 -1.3
1,414,485 - -0.1
1,414,485 - -2.0
1,414,485 - -1.4
1,414,554 - +1.5
1,414,554 - +0.5
1,414,628 - -2.1
1,414,652 + +0.5
1,414,652 + -0.3
1,414,654 - -1.4
1,414,660 - +0.2
1,414,662 + -0.2
1,414,687 + MPMX20_01352 0.11 -3.0
1,414,690 - MPMX20_01352 0.11 +1.5
1,414,715 - MPMX20_01352 0.13 -2.3
1,414,715 - MPMX20_01352 0.13 +0.5
1,414,916 + MPMX20_01352 0.24 -1.9
1,414,924 - MPMX20_01352 0.24 -2.8
1,415,020 + MPMX20_01352 0.30 -2.0
1,415,028 - MPMX20_01352 0.30 -2.6
1,415,028 - MPMX20_01352 0.30 -1.9
1,415,030 + MPMX20_01352 0.30 -0.1
1,415,038 - MPMX20_01352 0.31 -0.6
1,415,038 - MPMX20_01352 0.31 -0.1
1,415,048 - MPMX20_01352 0.31 +0.9
1,415,066 + MPMX20_01352 0.32 -2.2
1,415,156 + MPMX20_01352 0.38 +0.3
1,415,162 + MPMX20_01352 0.38 -2.9
1,415,163 - MPMX20_01352 0.38 -2.0
1,415,323 - MPMX20_01352 0.47 -2.1
1,415,353 - MPMX20_01352 0.49 -1.6
1,415,353 - MPMX20_01352 0.49 -2.2
1,415,490 + MPMX20_01352 0.56 -2.1
1,415,490 + MPMX20_01352 0.56 -1.3
1,415,613 + MPMX20_01352 0.63 -2.4
1,415,621 - MPMX20_01352 0.64 -1.6
1,415,621 - MPMX20_01352 0.64 -1.2
1,415,746 - MPMX20_01352 0.71 -2.6
1,415,786 - MPMX20_01352 0.73 -0.3
1,415,826 - MPMX20_01352 0.75 -2.6
1,415,826 - MPMX20_01352 0.75 +1.5
1,415,947 - MPMX20_01352 0.82 +0.5
1,415,957 - MPMX20_01352 0.83 -0.1
1,415,996 + MPMX20_01352 0.85 -2.9
1,416,014 - MPMX20_01352 0.86 -2.2
1,416,014 - MPMX20_01352 0.86 -1.1
1,416,014 - MPMX20_01352 0.86 +2.5
1,416,037 - MPMX20_01352 0.87 -0.3
1,416,067 + MPMX20_01352 0.89 -0.6
1,416,091 + +1.9
1,416,099 - -1.9
1,416,386 + MPMX20_01353 0.16 -1.7
1,416,394 - MPMX20_01353 0.17 +0.2
1,416,446 - MPMX20_01353 0.24 +0.5
1,416,492 + MPMX20_01353 0.30 -2.9
1,416,514 + MPMX20_01353 0.33 -1.9
1,416,680 + MPMX20_01353 0.57 -1.6
1,416,680 + MPMX20_01353 0.57 -0.9
1,416,707 + MPMX20_01353 0.60 -1.3
1,416,724 - MPMX20_01353 0.63 -0.6
1,416,724 - MPMX20_01353 0.63 -0.3
1,416,762 - MPMX20_01353 0.68 -1.8
1,416,836 - MPMX20_01353 0.78 -2.4
1,416,914 + MPMX20_01353 0.89 -1.8
1,416,919 + -0.3
1,416,920 + -1.2
1,416,970 - -2.8
1,416,983 + +0.8
1,416,990 + +1.9
1,417,020 + +3.3
1,417,020 + -2.3
1,417,020 + +0.4
1,417,022 - -0.1
1,417,027 - -0.9
1,417,028 - -2.2
1,417,039 + -0.7
1,417,040 - -0.8

Or see this region's nucleotide sequence