Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01347

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01345 and MPMX20_01346 overlap by 7 nucleotidesMPMX20_01346 and MPMX20_01347 overlap by 14 nucleotidesMPMX20_01347 and MPMX20_01348 are separated by 21 nucleotidesMPMX20_01348 and MPMX20_01349 are separated by 100 nucleotides MPMX20_01345: MPMX20_01345 - 5-oxoprolinase subunit B, at 1,408,602 to 1,409,258 _01345 MPMX20_01346: MPMX20_01346 - 5-oxoprolinase subunit C, at 1,409,252 to 1,410,184 _01346 MPMX20_01347: MPMX20_01347 - 5-oxoprolinase subunit A, at 1,410,171 to 1,410,908 _01347 MPMX20_01348: MPMX20_01348 - Endonuclease 8, at 1,410,930 to 1,411,721 _01348 MPMX20_01349: MPMX20_01349 - Citrate synthase, at 1,411,822 to 1,413,105 _01349 Position (kb) 1410 1411Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1409.193 kb on - strandat 1409.204 kb on + strandat 1409.215 kb on + strandat 1409.223 kb on - strandat 1409.223 kb on - strandat 1409.263 kb on + strandat 1409.309 kb on + strandat 1409.327 kb on - strandat 1409.337 kb on - strandat 1409.340 kb on - strandat 1409.342 kb on + strandat 1409.345 kb on - strandat 1409.385 kb on - strand, within MPMX20_01346at 1409.388 kb on + strand, within MPMX20_01346at 1409.389 kb on + strand, within MPMX20_01346at 1409.389 kb on + strand, within MPMX20_01346at 1409.612 kb on - strand, within MPMX20_01346at 1409.629 kb on - strand, within MPMX20_01346at 1409.755 kb on + strand, within MPMX20_01346at 1409.835 kb on - strand, within MPMX20_01346at 1409.874 kb on - strand, within MPMX20_01346at 1409.894 kb on + strand, within MPMX20_01346at 1409.894 kb on + strand, within MPMX20_01346at 1409.894 kb on + strand, within MPMX20_01346at 1409.902 kb on - strand, within MPMX20_01346at 1409.962 kb on + strand, within MPMX20_01346at 1410.157 kb on + strandat 1410.172 kb on - strandat 1410.196 kb on + strandat 1410.201 kb on + strandat 1410.247 kb on - strand, within MPMX20_01347at 1410.413 kb on - strand, within MPMX20_01347at 1410.430 kb on - strand, within MPMX20_01347at 1410.559 kb on + strand, within MPMX20_01347at 1410.560 kb on - strand, within MPMX20_01347at 1410.560 kb on - strand, within MPMX20_01347at 1410.586 kb on + strand, within MPMX20_01347at 1410.589 kb on - strand, within MPMX20_01347at 1410.657 kb on + strand, within MPMX20_01347at 1410.764 kb on + strand, within MPMX20_01347at 1410.887 kb on + strandat 1410.887 kb on + strandat 1410.890 kb on - strandat 1410.895 kb on - strandat 1410.917 kb on - strandat 1410.967 kb on + strandat 1410.967 kb on + strandat 1410.976 kb on - strandat 1411.201 kb on + strand, within MPMX20_01348at 1411.207 kb on + strand, within MPMX20_01348at 1411.223 kb on + strand, within MPMX20_01348at 1411.235 kb on + strand, within MPMX20_01348at 1411.235 kb on + strand, within MPMX20_01348at 1411.293 kb on + strand, within MPMX20_01348at 1411.342 kb on - strand, within MPMX20_01348at 1411.347 kb on + strand, within MPMX20_01348at 1411.456 kb on + strand, within MPMX20_01348at 1411.481 kb on + strand, within MPMX20_01348at 1411.481 kb on + strand, within MPMX20_01348at 1411.481 kb on + strand, within MPMX20_01348at 1411.481 kb on + strand, within MPMX20_01348at 1411.481 kb on + strand, within MPMX20_01348at 1411.481 kb on + strand, within MPMX20_01348at 1411.481 kb on + strand, within MPMX20_01348at 1411.489 kb on - strand, within MPMX20_01348at 1411.489 kb on - strand, within MPMX20_01348at 1411.489 kb on - strand, within MPMX20_01348at 1411.489 kb on - strand, within MPMX20_01348at 1411.489 kb on - strand, within MPMX20_01348at 1411.489 kb on - strand, within MPMX20_01348at 1411.489 kb on - strand, within MPMX20_01348at 1411.489 kb on - strand, within MPMX20_01348at 1411.519 kb on - strand, within MPMX20_01348at 1411.600 kb on - strand, within MPMX20_01348at 1411.600 kb on - strand, within MPMX20_01348at 1411.609 kb on + strand, within MPMX20_01348at 1411.617 kb on - strand, within MPMX20_01348at 1411.642 kb on - strandat 1411.679 kb on + strandat 1411.682 kb on + strandat 1411.738 kb on - strandat 1411.738 kb on - strandat 1411.738 kb on - strandat 1411.744 kb on - strandat 1411.744 kb on - strandat 1411.744 kb on - strandat 1411.744 kb on - strandat 1411.774 kb on + strandat 1411.782 kb on - strandat 1411.799 kb on - strandat 1411.807 kb on - strandat 1411.812 kb on - strandat 1411.862 kb on - strandat 1411.865 kb on + strandat 1411.865 kb on + strandat 1411.865 kb on + strandat 1411.865 kb on + strandat 1411.873 kb on - strandat 1411.873 kb on - strandat 1411.873 kb on - strandat 1411.873 kb on - strandat 1411.873 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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1,409,193 - +0.1
1,409,204 + -0.3
1,409,215 + -1.2
1,409,223 - -1.6
1,409,223 - -1.8
1,409,263 + -0.8
1,409,309 + +1.4
1,409,327 - -1.5
1,409,337 - +1.5
1,409,340 - -1.8
1,409,342 + -0.9
1,409,345 - -0.7
1,409,385 - MPMX20_01346 0.14 +0.7
1,409,388 + MPMX20_01346 0.15 -0.2
1,409,389 + MPMX20_01346 0.15 -0.7
1,409,389 + MPMX20_01346 0.15 -1.1
1,409,612 - MPMX20_01346 0.39 -2.3
1,409,629 - MPMX20_01346 0.40 -0.8
1,409,755 + MPMX20_01346 0.54 -0.4
1,409,835 - MPMX20_01346 0.62 +0.5
1,409,874 - MPMX20_01346 0.67 -3.3
1,409,894 + MPMX20_01346 0.69 -0.1
1,409,894 + MPMX20_01346 0.69 -1.9
1,409,894 + MPMX20_01346 0.69 +0.4
1,409,902 - MPMX20_01346 0.70 -0.6
1,409,962 + MPMX20_01346 0.76 +0.3
1,410,157 + +0.9
1,410,172 - -2.8
1,410,196 + -0.2
1,410,201 + -2.5
1,410,247 - MPMX20_01347 0.10 -0.2
1,410,413 - MPMX20_01347 0.33 +1.5
1,410,430 - MPMX20_01347 0.35 -3.0
1,410,559 + MPMX20_01347 0.53 -0.1
1,410,560 - MPMX20_01347 0.53 -1.6
1,410,560 - MPMX20_01347 0.53 -2.1
1,410,586 + MPMX20_01347 0.56 -1.6
1,410,589 - MPMX20_01347 0.57 -0.6
1,410,657 + MPMX20_01347 0.66 -0.6
1,410,764 + MPMX20_01347 0.80 -1.2
1,410,887 + +0.9
1,410,887 + +0.2
1,410,890 - -1.6
1,410,895 - -1.9
1,410,917 - +0.1
1,410,967 + -2.6
1,410,967 + +1.2
1,410,976 - -0.6
1,411,201 + MPMX20_01348 0.34 +0.9
1,411,207 + MPMX20_01348 0.35 +0.1
1,411,223 + MPMX20_01348 0.37 -0.3
1,411,235 + MPMX20_01348 0.39 -1.7
1,411,235 + MPMX20_01348 0.39 +0.9
1,411,293 + MPMX20_01348 0.46 -0.1
1,411,342 - MPMX20_01348 0.52 +0.5
1,411,347 + MPMX20_01348 0.53 -0.5
1,411,456 + MPMX20_01348 0.66 -1.6
1,411,481 + MPMX20_01348 0.70 -1.5
1,411,481 + MPMX20_01348 0.70 -1.2
1,411,481 + MPMX20_01348 0.70 -0.1
1,411,481 + MPMX20_01348 0.70 +1.3
1,411,481 + MPMX20_01348 0.70 -0.2
1,411,481 + MPMX20_01348 0.70 -1.2
1,411,481 + MPMX20_01348 0.70 -0.3
1,411,489 - MPMX20_01348 0.71 -2.5
1,411,489 - MPMX20_01348 0.71 -1.1
1,411,489 - MPMX20_01348 0.71 -0.0
1,411,489 - MPMX20_01348 0.71 -0.8
1,411,489 - MPMX20_01348 0.71 -0.6
1,411,489 - MPMX20_01348 0.71 +0.0
1,411,489 - MPMX20_01348 0.71 -0.1
1,411,489 - MPMX20_01348 0.71 -0.6
1,411,519 - MPMX20_01348 0.74 -2.3
1,411,600 - MPMX20_01348 0.85 +0.2
1,411,600 - MPMX20_01348 0.85 -0.8
1,411,609 + MPMX20_01348 0.86 -1.5
1,411,617 - MPMX20_01348 0.87 +0.3
1,411,642 - +2.7
1,411,679 + +0.7
1,411,682 + +0.7
1,411,738 - +1.4
1,411,738 - +1.2
1,411,738 - -2.0
1,411,744 - +0.4
1,411,744 - -1.9
1,411,744 - +0.5
1,411,744 - -0.9
1,411,774 + -1.6
1,411,782 - +1.5
1,411,799 - +0.9
1,411,807 - -0.2
1,411,812 - -1.4
1,411,862 - -0.1
1,411,865 + -3.3
1,411,865 + -2.9
1,411,865 + -1.5
1,411,865 + -0.8
1,411,873 - +1.2
1,411,873 - -2.1
1,411,873 - +0.5
1,411,873 - -2.0
1,411,873 - -0.4

Or see this region's nucleotide sequence