Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01345 and MPMX20_01346 overlap by 7 nucleotides MPMX20_01346 and MPMX20_01347 overlap by 14 nucleotides MPMX20_01347 and MPMX20_01348 are separated by 21 nucleotides MPMX20_01348 and MPMX20_01349 are separated by 100 nucleotides
MPMX20_01345: MPMX20_01345 - 5-oxoprolinase subunit B, at 1,408,602 to 1,409,258
_01345
MPMX20_01346: MPMX20_01346 - 5-oxoprolinase subunit C, at 1,409,252 to 1,410,184
_01346
MPMX20_01347: MPMX20_01347 - 5-oxoprolinase subunit A, at 1,410,171 to 1,410,908
_01347
MPMX20_01348: MPMX20_01348 - Endonuclease 8, at 1,410,930 to 1,411,721
_01348
MPMX20_01349: MPMX20_01349 - Citrate synthase, at 1,411,822 to 1,413,105
_01349
Position (kb)
1410
1411 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1409.193 kb on - strand at 1409.204 kb on + strand at 1409.215 kb on + strand at 1409.223 kb on - strand at 1409.223 kb on - strand at 1409.263 kb on + strand at 1409.309 kb on + strand at 1409.327 kb on - strand at 1409.337 kb on - strand at 1409.340 kb on - strand at 1409.342 kb on + strand at 1409.345 kb on - strand at 1409.385 kb on - strand, within MPMX20_01346 at 1409.388 kb on + strand, within MPMX20_01346 at 1409.389 kb on + strand, within MPMX20_01346 at 1409.389 kb on + strand, within MPMX20_01346 at 1409.612 kb on - strand, within MPMX20_01346 at 1409.629 kb on - strand, within MPMX20_01346 at 1409.755 kb on + strand, within MPMX20_01346 at 1409.835 kb on - strand, within MPMX20_01346 at 1409.874 kb on - strand, within MPMX20_01346 at 1409.894 kb on + strand, within MPMX20_01346 at 1409.894 kb on + strand, within MPMX20_01346 at 1409.894 kb on + strand, within MPMX20_01346 at 1409.902 kb on - strand, within MPMX20_01346 at 1409.962 kb on + strand, within MPMX20_01346 at 1410.157 kb on + strand at 1410.172 kb on - strand at 1410.196 kb on + strand at 1410.201 kb on + strand at 1410.247 kb on - strand, within MPMX20_01347 at 1410.413 kb on - strand, within MPMX20_01347 at 1410.430 kb on - strand, within MPMX20_01347 at 1410.559 kb on + strand, within MPMX20_01347 at 1410.560 kb on - strand, within MPMX20_01347 at 1410.560 kb on - strand, within MPMX20_01347 at 1410.586 kb on + strand, within MPMX20_01347 at 1410.589 kb on - strand, within MPMX20_01347 at 1410.657 kb on + strand, within MPMX20_01347 at 1410.764 kb on + strand, within MPMX20_01347 at 1410.887 kb on + strand at 1410.887 kb on + strand at 1410.890 kb on - strand at 1410.895 kb on - strand at 1410.917 kb on - strand at 1410.967 kb on + strand at 1410.967 kb on + strand at 1410.976 kb on - strand at 1411.201 kb on + strand, within MPMX20_01348 at 1411.207 kb on + strand, within MPMX20_01348 at 1411.223 kb on + strand, within MPMX20_01348 at 1411.235 kb on + strand, within MPMX20_01348 at 1411.235 kb on + strand, within MPMX20_01348 at 1411.293 kb on + strand, within MPMX20_01348 at 1411.342 kb on - strand, within MPMX20_01348 at 1411.347 kb on + strand, within MPMX20_01348 at 1411.456 kb on + strand, within MPMX20_01348 at 1411.481 kb on + strand, within MPMX20_01348 at 1411.481 kb on + strand, within MPMX20_01348 at 1411.481 kb on + strand, within MPMX20_01348 at 1411.481 kb on + strand, within MPMX20_01348 at 1411.481 kb on + strand, within MPMX20_01348 at 1411.481 kb on + strand, within MPMX20_01348 at 1411.481 kb on + strand, within MPMX20_01348 at 1411.489 kb on - strand, within MPMX20_01348 at 1411.489 kb on - strand, within MPMX20_01348 at 1411.489 kb on - strand, within MPMX20_01348 at 1411.489 kb on - strand, within MPMX20_01348 at 1411.489 kb on - strand, within MPMX20_01348 at 1411.489 kb on - strand, within MPMX20_01348 at 1411.489 kb on - strand, within MPMX20_01348 at 1411.489 kb on - strand, within MPMX20_01348 at 1411.519 kb on - strand, within MPMX20_01348 at 1411.600 kb on - strand, within MPMX20_01348 at 1411.600 kb on - strand, within MPMX20_01348 at 1411.609 kb on + strand, within MPMX20_01348 at 1411.617 kb on - strand, within MPMX20_01348 at 1411.642 kb on - strand at 1411.679 kb on + strand at 1411.682 kb on + strand at 1411.738 kb on - strand at 1411.738 kb on - strand at 1411.738 kb on - strand at 1411.744 kb on - strand at 1411.744 kb on - strand at 1411.744 kb on - strand at 1411.744 kb on - strand at 1411.774 kb on + strand at 1411.782 kb on - strand at 1411.799 kb on - strand at 1411.807 kb on - strand at 1411.812 kb on - strand at 1411.862 kb on - strand at 1411.865 kb on + strand at 1411.865 kb on + strand at 1411.865 kb on + strand at 1411.865 kb on + strand at 1411.873 kb on - strand at 1411.873 kb on - strand at 1411.873 kb on - strand at 1411.873 kb on - strand at 1411.873 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 1,409,193 - +0.1 1,409,204 + -0.3 1,409,215 + -1.2 1,409,223 - -1.6 1,409,223 - -1.8 1,409,263 + -0.8 1,409,309 + +1.4 1,409,327 - -1.5 1,409,337 - +1.5 1,409,340 - -1.8 1,409,342 + -0.9 1,409,345 - -0.7 1,409,385 - MPMX20_01346 0.14 +0.7 1,409,388 + MPMX20_01346 0.15 -0.2 1,409,389 + MPMX20_01346 0.15 -0.7 1,409,389 + MPMX20_01346 0.15 -1.1 1,409,612 - MPMX20_01346 0.39 -2.3 1,409,629 - MPMX20_01346 0.40 -0.8 1,409,755 + MPMX20_01346 0.54 -0.4 1,409,835 - MPMX20_01346 0.62 +0.5 1,409,874 - MPMX20_01346 0.67 -3.3 1,409,894 + MPMX20_01346 0.69 -0.1 1,409,894 + MPMX20_01346 0.69 -1.9 1,409,894 + MPMX20_01346 0.69 +0.4 1,409,902 - MPMX20_01346 0.70 -0.6 1,409,962 + MPMX20_01346 0.76 +0.3 1,410,157 + +0.9 1,410,172 - -2.8 1,410,196 + -0.2 1,410,201 + -2.5 1,410,247 - MPMX20_01347 0.10 -0.2 1,410,413 - MPMX20_01347 0.33 +1.5 1,410,430 - MPMX20_01347 0.35 -3.0 1,410,559 + MPMX20_01347 0.53 -0.1 1,410,560 - MPMX20_01347 0.53 -1.6 1,410,560 - MPMX20_01347 0.53 -2.1 1,410,586 + MPMX20_01347 0.56 -1.6 1,410,589 - MPMX20_01347 0.57 -0.6 1,410,657 + MPMX20_01347 0.66 -0.6 1,410,764 + MPMX20_01347 0.80 -1.2 1,410,887 + +0.9 1,410,887 + +0.2 1,410,890 - -1.6 1,410,895 - -1.9 1,410,917 - +0.1 1,410,967 + -2.6 1,410,967 + +1.2 1,410,976 - -0.6 1,411,201 + MPMX20_01348 0.34 +0.9 1,411,207 + MPMX20_01348 0.35 +0.1 1,411,223 + MPMX20_01348 0.37 -0.3 1,411,235 + MPMX20_01348 0.39 -1.7 1,411,235 + MPMX20_01348 0.39 +0.9 1,411,293 + MPMX20_01348 0.46 -0.1 1,411,342 - MPMX20_01348 0.52 +0.5 1,411,347 + MPMX20_01348 0.53 -0.5 1,411,456 + MPMX20_01348 0.66 -1.6 1,411,481 + MPMX20_01348 0.70 -1.5 1,411,481 + MPMX20_01348 0.70 -1.2 1,411,481 + MPMX20_01348 0.70 -0.1 1,411,481 + MPMX20_01348 0.70 +1.3 1,411,481 + MPMX20_01348 0.70 -0.2 1,411,481 + MPMX20_01348 0.70 -1.2 1,411,481 + MPMX20_01348 0.70 -0.3 1,411,489 - MPMX20_01348 0.71 -2.5 1,411,489 - MPMX20_01348 0.71 -1.1 1,411,489 - MPMX20_01348 0.71 -0.0 1,411,489 - MPMX20_01348 0.71 -0.8 1,411,489 - MPMX20_01348 0.71 -0.6 1,411,489 - MPMX20_01348 0.71 +0.0 1,411,489 - MPMX20_01348 0.71 -0.1 1,411,489 - MPMX20_01348 0.71 -0.6 1,411,519 - MPMX20_01348 0.74 -2.3 1,411,600 - MPMX20_01348 0.85 +0.2 1,411,600 - MPMX20_01348 0.85 -0.8 1,411,609 + MPMX20_01348 0.86 -1.5 1,411,617 - MPMX20_01348 0.87 +0.3 1,411,642 - +2.7 1,411,679 + +0.7 1,411,682 + +0.7 1,411,738 - +1.4 1,411,738 - +1.2 1,411,738 - -2.0 1,411,744 - +0.4 1,411,744 - -1.9 1,411,744 - +0.5 1,411,744 - -0.9 1,411,774 + -1.6 1,411,782 - +1.5 1,411,799 - +0.9 1,411,807 - -0.2 1,411,812 - -1.4 1,411,862 - -0.1 1,411,865 + -3.3 1,411,865 + -2.9 1,411,865 + -1.5 1,411,865 + -0.8 1,411,873 - +1.2 1,411,873 - -2.1 1,411,873 - +0.5 1,411,873 - -2.0 1,411,873 - -0.4
Or see this region's nucleotide sequence