Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01310

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01308 and MPMX20_01309 are separated by 89 nucleotidesMPMX20_01309 and MPMX20_01310 overlap by 4 nucleotidesMPMX20_01310 and MPMX20_01311 are separated by 164 nucleotides MPMX20_01308: MPMX20_01308 - Magnesium and cobalt efflux protein CorC, at 1,369,692 to 1,370,570 _01308 MPMX20_01309: MPMX20_01309 - Endoribonuclease YbeY, at 1,370,660 to 1,371,127 _01309 MPMX20_01310: MPMX20_01310 - PhoH-like protein, at 1,371,124 to 1,372,170 _01310 MPMX20_01311: MPMX20_01311 - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase, at 1,372,335 to 1,373,759 _01311 Position (kb) 1371 1372 1373Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1370.140 kb on + strand, within MPMX20_01308at 1370.169 kb on + strand, within MPMX20_01308at 1370.311 kb on - strand, within MPMX20_01308at 1370.321 kb on + strand, within MPMX20_01308at 1370.392 kb on - strand, within MPMX20_01308at 1370.400 kb on - strand, within MPMX20_01308at 1370.540 kb on + strandat 1370.577 kb on + strandat 1370.605 kb on - strandat 1370.627 kb on - strandat 1371.139 kb on + strandat 1371.139 kb on + strandat 1371.147 kb on - strandat 1371.176 kb on + strandat 1371.192 kb on - strandat 1371.217 kb on - strandat 1371.252 kb on + strand, within MPMX20_01310at 1371.252 kb on + strand, within MPMX20_01310at 1371.278 kb on - strand, within MPMX20_01310at 1371.311 kb on - strand, within MPMX20_01310at 1371.345 kb on + strand, within MPMX20_01310at 1371.479 kb on - strand, within MPMX20_01310at 1371.479 kb on - strand, within MPMX20_01310at 1371.564 kb on - strand, within MPMX20_01310at 1371.598 kb on - strand, within MPMX20_01310at 1371.599 kb on - strand, within MPMX20_01310at 1371.639 kb on - strand, within MPMX20_01310at 1371.656 kb on - strand, within MPMX20_01310at 1371.666 kb on - strand, within MPMX20_01310at 1371.867 kb on - strand, within MPMX20_01310at 1371.890 kb on - strand, within MPMX20_01310at 1371.977 kb on - strand, within MPMX20_01310at 1372.172 kb on + strandat 1372.174 kb on + strandat 1372.252 kb on + strandat 1372.252 kb on + strandat 1372.252 kb on + strandat 1372.260 kb on - strandat 1372.267 kb on - strandat 1372.288 kb on - strandat 1372.288 kb on - strandat 1372.332 kb on + strandat 1372.340 kb on - strandat 1372.428 kb on - strandat 1372.459 kb on + strandat 1372.459 kb on + strandat 1372.467 kb on - strandat 1372.508 kb on + strand, within MPMX20_01311at 1372.508 kb on + strand, within MPMX20_01311at 1372.516 kb on - strand, within MPMX20_01311at 1372.552 kb on + strand, within MPMX20_01311at 1372.570 kb on - strand, within MPMX20_01311at 1372.612 kb on + strand, within MPMX20_01311at 1372.620 kb on - strand, within MPMX20_01311at 1372.620 kb on - strand, within MPMX20_01311at 1372.638 kb on - strand, within MPMX20_01311at 1372.644 kb on - strand, within MPMX20_01311at 1372.654 kb on + strand, within MPMX20_01311at 1372.658 kb on - strand, within MPMX20_01311at 1372.726 kb on + strand, within MPMX20_01311at 1372.727 kb on - strand, within MPMX20_01311at 1372.730 kb on + strand, within MPMX20_01311at 1372.739 kb on - strand, within MPMX20_01311at 1372.756 kb on - strand, within MPMX20_01311at 1372.798 kb on - strand, within MPMX20_01311at 1372.810 kb on - strand, within MPMX20_01311at 1372.873 kb on + strand, within MPMX20_01311at 1372.988 kb on + strand, within MPMX20_01311at 1372.988 kb on + strand, within MPMX20_01311at 1372.996 kb on - strand, within MPMX20_01311at 1373.125 kb on + strand, within MPMX20_01311at 1373.152 kb on - strand, within MPMX20_01311

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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1,370,140 + MPMX20_01308 0.51 +0.5
1,370,169 + MPMX20_01308 0.54 -1.0
1,370,311 - MPMX20_01308 0.70 -0.2
1,370,321 + MPMX20_01308 0.72 -1.6
1,370,392 - MPMX20_01308 0.80 -0.8
1,370,400 - MPMX20_01308 0.81 +0.5
1,370,540 + -2.7
1,370,577 + +0.9
1,370,605 - -1.2
1,370,627 - -0.2
1,371,139 + -0.3
1,371,139 + -0.7
1,371,147 - +1.9
1,371,176 + -2.0
1,371,192 - +0.4
1,371,217 - +0.9
1,371,252 + MPMX20_01310 0.12 +1.2
1,371,252 + MPMX20_01310 0.12 -0.5
1,371,278 - MPMX20_01310 0.15 -0.3
1,371,311 - MPMX20_01310 0.18 +0.4
1,371,345 + MPMX20_01310 0.21 +1.5
1,371,479 - MPMX20_01310 0.34 -0.9
1,371,479 - MPMX20_01310 0.34 -1.2
1,371,564 - MPMX20_01310 0.42 -1.2
1,371,598 - MPMX20_01310 0.45 -2.1
1,371,599 - MPMX20_01310 0.45 +0.9
1,371,639 - MPMX20_01310 0.49 -1.0
1,371,656 - MPMX20_01310 0.51 -1.9
1,371,666 - MPMX20_01310 0.52 -0.2
1,371,867 - MPMX20_01310 0.71 +0.9
1,371,890 - MPMX20_01310 0.73 +0.5
1,371,977 - MPMX20_01310 0.81 -0.3
1,372,172 + +1.2
1,372,174 + -2.3
1,372,252 + +0.9
1,372,252 + +1.8
1,372,252 + -2.9
1,372,260 - -0.2
1,372,267 - +1.8
1,372,288 - +2.5
1,372,288 - +0.5
1,372,332 + -2.8
1,372,340 - -1.7
1,372,428 - -0.0
1,372,459 + -1.5
1,372,459 + -1.1
1,372,467 - -0.2
1,372,508 + MPMX20_01311 0.12 +0.5
1,372,508 + MPMX20_01311 0.12 -1.3
1,372,516 - MPMX20_01311 0.13 -2.5
1,372,552 + MPMX20_01311 0.15 -1.4
1,372,570 - MPMX20_01311 0.16 +0.1
1,372,612 + MPMX20_01311 0.19 -1.5
1,372,620 - MPMX20_01311 0.20 -1.3
1,372,620 - MPMX20_01311 0.20 -2.9
1,372,638 - MPMX20_01311 0.21 +1.0
1,372,644 - MPMX20_01311 0.22 -2.1
1,372,654 + MPMX20_01311 0.22 +0.7
1,372,658 - MPMX20_01311 0.23 -1.1
1,372,726 + MPMX20_01311 0.27 -2.9
1,372,727 - MPMX20_01311 0.28 +0.3
1,372,730 + MPMX20_01311 0.28 -1.3
1,372,739 - MPMX20_01311 0.28 +0.3
1,372,756 - MPMX20_01311 0.30 -0.5
1,372,798 - MPMX20_01311 0.32 -0.4
1,372,810 - MPMX20_01311 0.33 +0.0
1,372,873 + MPMX20_01311 0.38 -1.7
1,372,988 + MPMX20_01311 0.46 -2.1
1,372,988 + MPMX20_01311 0.46 +0.2
1,372,996 - MPMX20_01311 0.46 -1.0
1,373,125 + MPMX20_01311 0.55 +4.9
1,373,152 - MPMX20_01311 0.57 -1.1

Or see this region's nucleotide sequence