Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01308 and MPMX20_01309 are separated by 89 nucleotides MPMX20_01309 and MPMX20_01310 overlap by 4 nucleotides MPMX20_01310 and MPMX20_01311 are separated by 164 nucleotides
MPMX20_01308: MPMX20_01308 - Magnesium and cobalt efflux protein CorC, at 1,369,692 to 1,370,570
_01308
MPMX20_01309: MPMX20_01309 - Endoribonuclease YbeY, at 1,370,660 to 1,371,127
_01309
MPMX20_01310: MPMX20_01310 - PhoH-like protein, at 1,371,124 to 1,372,170
_01310
MPMX20_01311: MPMX20_01311 - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase, at 1,372,335 to 1,373,759
_01311
Position (kb)
1371
1372
1373 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1370.140 kb on + strand, within MPMX20_01308 at 1370.169 kb on + strand, within MPMX20_01308 at 1370.311 kb on - strand, within MPMX20_01308 at 1370.321 kb on + strand, within MPMX20_01308 at 1370.392 kb on - strand, within MPMX20_01308 at 1370.400 kb on - strand, within MPMX20_01308 at 1370.540 kb on + strand at 1370.577 kb on + strand at 1370.605 kb on - strand at 1370.627 kb on - strand at 1371.139 kb on + strand at 1371.139 kb on + strand at 1371.147 kb on - strand at 1371.176 kb on + strand at 1371.192 kb on - strand at 1371.217 kb on - strand at 1371.252 kb on + strand, within MPMX20_01310 at 1371.252 kb on + strand, within MPMX20_01310 at 1371.278 kb on - strand, within MPMX20_01310 at 1371.311 kb on - strand, within MPMX20_01310 at 1371.345 kb on + strand, within MPMX20_01310 at 1371.479 kb on - strand, within MPMX20_01310 at 1371.479 kb on - strand, within MPMX20_01310 at 1371.564 kb on - strand, within MPMX20_01310 at 1371.598 kb on - strand, within MPMX20_01310 at 1371.599 kb on - strand, within MPMX20_01310 at 1371.639 kb on - strand, within MPMX20_01310 at 1371.656 kb on - strand, within MPMX20_01310 at 1371.666 kb on - strand, within MPMX20_01310 at 1371.867 kb on - strand, within MPMX20_01310 at 1371.890 kb on - strand, within MPMX20_01310 at 1371.977 kb on - strand, within MPMX20_01310 at 1372.172 kb on + strand at 1372.174 kb on + strand at 1372.252 kb on + strand at 1372.252 kb on + strand at 1372.252 kb on + strand at 1372.260 kb on - strand at 1372.267 kb on - strand at 1372.288 kb on - strand at 1372.288 kb on - strand at 1372.332 kb on + strand at 1372.340 kb on - strand at 1372.428 kb on - strand at 1372.459 kb on + strand at 1372.459 kb on + strand at 1372.467 kb on - strand at 1372.508 kb on + strand, within MPMX20_01311 at 1372.508 kb on + strand, within MPMX20_01311 at 1372.516 kb on - strand, within MPMX20_01311 at 1372.552 kb on + strand, within MPMX20_01311 at 1372.570 kb on - strand, within MPMX20_01311 at 1372.612 kb on + strand, within MPMX20_01311 at 1372.620 kb on - strand, within MPMX20_01311 at 1372.620 kb on - strand, within MPMX20_01311 at 1372.638 kb on - strand, within MPMX20_01311 at 1372.644 kb on - strand, within MPMX20_01311 at 1372.654 kb on + strand, within MPMX20_01311 at 1372.658 kb on - strand, within MPMX20_01311 at 1372.726 kb on + strand, within MPMX20_01311 at 1372.727 kb on - strand, within MPMX20_01311 at 1372.730 kb on + strand, within MPMX20_01311 at 1372.739 kb on - strand, within MPMX20_01311 at 1372.756 kb on - strand, within MPMX20_01311 at 1372.798 kb on - strand, within MPMX20_01311 at 1372.810 kb on - strand, within MPMX20_01311 at 1372.873 kb on + strand, within MPMX20_01311 at 1372.988 kb on + strand, within MPMX20_01311 at 1372.988 kb on + strand, within MPMX20_01311 at 1372.996 kb on - strand, within MPMX20_01311 at 1373.125 kb on + strand, within MPMX20_01311 at 1373.152 kb on - strand, within MPMX20_01311
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 1,370,140 + MPMX20_01308 0.51 +0.5 1,370,169 + MPMX20_01308 0.54 -1.0 1,370,311 - MPMX20_01308 0.70 -0.2 1,370,321 + MPMX20_01308 0.72 -1.6 1,370,392 - MPMX20_01308 0.80 -0.8 1,370,400 - MPMX20_01308 0.81 +0.5 1,370,540 + -2.7 1,370,577 + +0.9 1,370,605 - -1.2 1,370,627 - -0.2 1,371,139 + -0.3 1,371,139 + -0.7 1,371,147 - +1.9 1,371,176 + -2.0 1,371,192 - +0.4 1,371,217 - +0.9 1,371,252 + MPMX20_01310 0.12 +1.2 1,371,252 + MPMX20_01310 0.12 -0.5 1,371,278 - MPMX20_01310 0.15 -0.3 1,371,311 - MPMX20_01310 0.18 +0.4 1,371,345 + MPMX20_01310 0.21 +1.5 1,371,479 - MPMX20_01310 0.34 -0.9 1,371,479 - MPMX20_01310 0.34 -1.2 1,371,564 - MPMX20_01310 0.42 -1.2 1,371,598 - MPMX20_01310 0.45 -2.1 1,371,599 - MPMX20_01310 0.45 +0.9 1,371,639 - MPMX20_01310 0.49 -1.0 1,371,656 - MPMX20_01310 0.51 -1.9 1,371,666 - MPMX20_01310 0.52 -0.2 1,371,867 - MPMX20_01310 0.71 +0.9 1,371,890 - MPMX20_01310 0.73 +0.5 1,371,977 - MPMX20_01310 0.81 -0.3 1,372,172 + +1.2 1,372,174 + -2.3 1,372,252 + +0.9 1,372,252 + +1.8 1,372,252 + -2.9 1,372,260 - -0.2 1,372,267 - +1.8 1,372,288 - +2.5 1,372,288 - +0.5 1,372,332 + -2.8 1,372,340 - -1.7 1,372,428 - -0.0 1,372,459 + -1.5 1,372,459 + -1.1 1,372,467 - -0.2 1,372,508 + MPMX20_01311 0.12 +0.5 1,372,508 + MPMX20_01311 0.12 -1.3 1,372,516 - MPMX20_01311 0.13 -2.5 1,372,552 + MPMX20_01311 0.15 -1.4 1,372,570 - MPMX20_01311 0.16 +0.1 1,372,612 + MPMX20_01311 0.19 -1.5 1,372,620 - MPMX20_01311 0.20 -1.3 1,372,620 - MPMX20_01311 0.20 -2.9 1,372,638 - MPMX20_01311 0.21 +1.0 1,372,644 - MPMX20_01311 0.22 -2.1 1,372,654 + MPMX20_01311 0.22 +0.7 1,372,658 - MPMX20_01311 0.23 -1.1 1,372,726 + MPMX20_01311 0.27 -2.9 1,372,727 - MPMX20_01311 0.28 +0.3 1,372,730 + MPMX20_01311 0.28 -1.3 1,372,739 - MPMX20_01311 0.28 +0.3 1,372,756 - MPMX20_01311 0.30 -0.5 1,372,798 - MPMX20_01311 0.32 -0.4 1,372,810 - MPMX20_01311 0.33 +0.0 1,372,873 + MPMX20_01311 0.38 -1.7 1,372,988 + MPMX20_01311 0.46 -2.1 1,372,988 + MPMX20_01311 0.46 +0.2 1,372,996 - MPMX20_01311 0.46 -1.0 1,373,125 + MPMX20_01311 0.55 +4.9 1,373,152 - MPMX20_01311 0.57 -1.1
Or see this region's nucleotide sequence