Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01306 and MPMX20_01307 are separated by 331 nucleotides MPMX20_01307 and MPMX20_01308 are separated by 5 nucleotides MPMX20_01308 and MPMX20_01309 are separated by 89 nucleotides
MPMX20_01306: MPMX20_01306 - Glutamate/aspartate import solute-binding protein, at 1,366,911 to 1,367,816
_01306
MPMX20_01307: MPMX20_01307 - Apolipoprotein N-acyltransferase, at 1,368,148 to 1,369,686
_01307
MPMX20_01308: MPMX20_01308 - Magnesium and cobalt efflux protein CorC, at 1,369,692 to 1,370,570
_01308
MPMX20_01309: MPMX20_01309 - Endoribonuclease YbeY, at 1,370,660 to 1,371,127
_01309
Position (kb)
1368
1369
1370 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1367.150 kb on - strand, within MPMX20_01306 at 1367.470 kb on - strand, within MPMX20_01306 at 1367.564 kb on + strand, within MPMX20_01306 at 1367.593 kb on + strand, within MPMX20_01306 at 1367.593 kb on + strand, within MPMX20_01306 at 1367.593 kb on + strand, within MPMX20_01306 at 1367.611 kb on + strand, within MPMX20_01306 at 1367.618 kb on + strand, within MPMX20_01306 at 1367.619 kb on - strand, within MPMX20_01306 at 1367.666 kb on + strand, within MPMX20_01306 at 1367.717 kb on + strand, within MPMX20_01306 at 1367.725 kb on - strand, within MPMX20_01306 at 1367.730 kb on - strand at 1367.892 kb on + strand at 1367.892 kb on + strand at 1367.900 kb on - strand at 1367.917 kb on + strand at 1367.925 kb on - strand at 1368.013 kb on + strand at 1368.038 kb on - strand at 1368.115 kb on - strand at 1368.172 kb on + strand at 1368.172 kb on + strand at 1368.172 kb on + strand at 1368.172 kb on + strand at 1368.177 kb on + strand at 1368.180 kb on - strand at 1368.180 kb on - strand at 1368.180 kb on - strand at 1368.180 kb on - strand at 1368.180 kb on - strand at 1368.188 kb on + strand at 1369.698 kb on - strand at 1369.789 kb on + strand, within MPMX20_01308 at 1369.804 kb on + strand, within MPMX20_01308 at 1369.920 kb on - strand, within MPMX20_01308 at 1369.932 kb on + strand, within MPMX20_01308 at 1369.933 kb on + strand, within MPMX20_01308 at 1369.933 kb on + strand, within MPMX20_01308 at 1369.933 kb on + strand, within MPMX20_01308 at 1369.933 kb on + strand, within MPMX20_01308 at 1369.933 kb on + strand, within MPMX20_01308 at 1369.933 kb on + strand, within MPMX20_01308 at 1369.933 kb on + strand, within MPMX20_01308 at 1369.933 kb on + strand, within MPMX20_01308 at 1369.939 kb on - strand, within MPMX20_01308 at 1369.941 kb on - strand, within MPMX20_01308 at 1369.941 kb on - strand, within MPMX20_01308 at 1369.960 kb on - strand, within MPMX20_01308 at 1370.120 kb on + strand, within MPMX20_01308 at 1370.140 kb on + strand, within MPMX20_01308 at 1370.169 kb on + strand, within MPMX20_01308 at 1370.311 kb on - strand, within MPMX20_01308 at 1370.321 kb on + strand, within MPMX20_01308 at 1370.392 kb on - strand, within MPMX20_01308 at 1370.400 kb on - strand, within MPMX20_01308 at 1370.540 kb on + strand at 1370.577 kb on + strand at 1370.605 kb on - strand at 1370.627 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 1,367,150 - MPMX20_01306 0.26 -0.7 1,367,470 - MPMX20_01306 0.62 -3.0 1,367,564 + MPMX20_01306 0.72 +1.7 1,367,593 + MPMX20_01306 0.75 -0.4 1,367,593 + MPMX20_01306 0.75 -0.5 1,367,593 + MPMX20_01306 0.75 +0.5 1,367,611 + MPMX20_01306 0.77 -2.2 1,367,618 + MPMX20_01306 0.78 +1.0 1,367,619 - MPMX20_01306 0.78 -1.3 1,367,666 + MPMX20_01306 0.83 -1.1 1,367,717 + MPMX20_01306 0.89 -1.2 1,367,725 - MPMX20_01306 0.90 -3.0 1,367,730 - +0.3 1,367,892 + -3.4 1,367,892 + +0.2 1,367,900 - -0.5 1,367,917 + -0.1 1,367,925 - +0.7 1,368,013 + -0.5 1,368,038 - -2.9 1,368,115 - -1.1 1,368,172 + -3.0 1,368,172 + +0.5 1,368,172 + +0.5 1,368,172 + -0.6 1,368,177 + -0.4 1,368,180 - -1.8 1,368,180 - -1.4 1,368,180 - -0.2 1,368,180 - -2.2 1,368,180 - +0.2 1,368,188 + -0.2 1,369,698 - -0.7 1,369,789 + MPMX20_01308 0.11 +2.3 1,369,804 + MPMX20_01308 0.13 +0.9 1,369,920 - MPMX20_01308 0.26 -0.9 1,369,932 + MPMX20_01308 0.27 +0.2 1,369,933 + MPMX20_01308 0.27 +0.2 1,369,933 + MPMX20_01308 0.27 -0.1 1,369,933 + MPMX20_01308 0.27 -1.7 1,369,933 + MPMX20_01308 0.27 -1.7 1,369,933 + MPMX20_01308 0.27 +0.8 1,369,933 + MPMX20_01308 0.27 -1.3 1,369,933 + MPMX20_01308 0.27 +0.2 1,369,933 + MPMX20_01308 0.27 -0.3 1,369,939 - MPMX20_01308 0.28 +2.2 1,369,941 - MPMX20_01308 0.28 +0.6 1,369,941 - MPMX20_01308 0.28 +0.3 1,369,960 - MPMX20_01308 0.30 +4.5 1,370,120 + MPMX20_01308 0.49 -0.2 1,370,140 + MPMX20_01308 0.51 +0.5 1,370,169 + MPMX20_01308 0.54 -1.0 1,370,311 - MPMX20_01308 0.70 -0.2 1,370,321 + MPMX20_01308 0.72 -1.6 1,370,392 - MPMX20_01308 0.80 -0.8 1,370,400 - MPMX20_01308 0.81 +0.5 1,370,540 + -2.7 1,370,577 + +0.9 1,370,605 - -1.2 1,370,627 - -0.2
Or see this region's nucleotide sequence