Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01098

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01097 and MPMX20_01098 overlap by 4 nucleotidesMPMX20_01098 and MPMX20_01099 are separated by 212 nucleotidesMPMX20_01099 and MPMX20_01100 are separated by 137 nucleotides MPMX20_01097: MPMX20_01097 - N5-carboxyaminoimidazole ribonucleotide synthase, at 1,157,710 to 1,158,777 _01097 MPMX20_01098: MPMX20_01098 - N5-carboxyaminoimidazole ribonucleotide mutase, at 1,158,774 to 1,159,283 _01098 MPMX20_01099: MPMX20_01099 - hypothetical protein, at 1,159,496 to 1,159,705 _01099 MPMX20_01100: MPMX20_01100 - UDP-2,3-diacylglucosamine hydrolase, at 1,159,843 to 1,160,565 _01100 Position (kb) 1158 1159 1160Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1157.843 kb on - strand, within MPMX20_01097at 1157.889 kb on + strand, within MPMX20_01097at 1157.997 kb on + strand, within MPMX20_01097at 1158.051 kb on - strand, within MPMX20_01097at 1158.057 kb on + strand, within MPMX20_01097at 1158.057 kb on + strand, within MPMX20_01097at 1158.144 kb on - strand, within MPMX20_01097at 1158.174 kb on + strand, within MPMX20_01097at 1158.179 kb on + strand, within MPMX20_01097at 1158.179 kb on + strand, within MPMX20_01097at 1158.187 kb on - strand, within MPMX20_01097at 1158.239 kb on - strand, within MPMX20_01097at 1158.263 kb on - strand, within MPMX20_01097at 1158.270 kb on - strand, within MPMX20_01097at 1158.299 kb on + strand, within MPMX20_01097at 1158.318 kb on + strand, within MPMX20_01097at 1158.326 kb on - strand, within MPMX20_01097at 1158.326 kb on - strand, within MPMX20_01097at 1158.387 kb on + strand, within MPMX20_01097at 1158.387 kb on + strand, within MPMX20_01097at 1158.387 kb on + strand, within MPMX20_01097at 1158.395 kb on - strand, within MPMX20_01097at 1158.395 kb on - strand, within MPMX20_01097at 1158.609 kb on - strand, within MPMX20_01097at 1158.709 kb on - strandat 1158.801 kb on + strandat 1158.801 kb on + strandat 1158.816 kb on + strandat 1158.816 kb on + strandat 1158.816 kb on + strandat 1158.857 kb on - strand, within MPMX20_01098at 1158.972 kb on - strand, within MPMX20_01098at 1158.987 kb on + strand, within MPMX20_01098at 1158.987 kb on + strand, within MPMX20_01098at 1158.995 kb on - strand, within MPMX20_01098at 1159.014 kb on + strand, within MPMX20_01098at 1159.069 kb on - strand, within MPMX20_01098at 1159.091 kb on + strand, within MPMX20_01098at 1159.141 kb on + strand, within MPMX20_01098at 1159.149 kb on - strand, within MPMX20_01098at 1159.149 kb on - strand, within MPMX20_01098at 1159.231 kb on + strand, within MPMX20_01098at 1159.239 kb on - strandat 1159.515 kb on - strandat 1159.612 kb on + strand, within MPMX20_01099at 1159.615 kb on - strand, within MPMX20_01099at 1159.626 kb on + strand, within MPMX20_01099at 1159.747 kb on + strandat 1159.781 kb on - strandat 1159.871 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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1,157,843 - MPMX20_01097 0.12 -2.4
1,157,889 + MPMX20_01097 0.17 -2.1
1,157,997 + MPMX20_01097 0.27 -0.1
1,158,051 - MPMX20_01097 0.32 -0.7
1,158,057 + MPMX20_01097 0.32 -1.8
1,158,057 + MPMX20_01097 0.32 -1.8
1,158,144 - MPMX20_01097 0.41 +1.8
1,158,174 + MPMX20_01097 0.43 -2.2
1,158,179 + MPMX20_01097 0.44 +0.9
1,158,179 + MPMX20_01097 0.44 -2.0
1,158,187 - MPMX20_01097 0.45 +1.1
1,158,239 - MPMX20_01097 0.50 -1.6
1,158,263 - MPMX20_01097 0.52 -2.6
1,158,270 - MPMX20_01097 0.52 -1.4
1,158,299 + MPMX20_01097 0.55 -1.7
1,158,318 + MPMX20_01097 0.57 -0.8
1,158,326 - MPMX20_01097 0.58 +1.0
1,158,326 - MPMX20_01097 0.58 -1.1
1,158,387 + MPMX20_01097 0.63 -0.7
1,158,387 + MPMX20_01097 0.63 -2.1
1,158,387 + MPMX20_01097 0.63 +0.9
1,158,395 - MPMX20_01097 0.64 -1.3
1,158,395 - MPMX20_01097 0.64 +3.5
1,158,609 - MPMX20_01097 0.84 -1.4
1,158,709 - -0.3
1,158,801 + +0.2
1,158,801 + +0.5
1,158,816 + +0.2
1,158,816 + +1.5
1,158,816 + -1.4
1,158,857 - MPMX20_01098 0.16 -0.5
1,158,972 - MPMX20_01098 0.39 -2.3
1,158,987 + MPMX20_01098 0.42 +4.3
1,158,987 + MPMX20_01098 0.42 +1.5
1,158,995 - MPMX20_01098 0.43 -2.0
1,159,014 + MPMX20_01098 0.47 -2.0
1,159,069 - MPMX20_01098 0.58 -2.5
1,159,091 + MPMX20_01098 0.62 -0.8
1,159,141 + MPMX20_01098 0.72 -0.7
1,159,149 - MPMX20_01098 0.74 -0.7
1,159,149 - MPMX20_01098 0.74 -2.3
1,159,231 + MPMX20_01098 0.90 +0.5
1,159,239 - -0.5
1,159,515 - -2.6
1,159,612 + MPMX20_01099 0.55 +0.8
1,159,615 - MPMX20_01099 0.57 -1.7
1,159,626 + MPMX20_01099 0.62 +1.4
1,159,747 + +1.2
1,159,781 - -0.1
1,159,871 - +0.5

Or see this region's nucleotide sequence