Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01097 and MPMX20_01098 overlap by 4 nucleotides MPMX20_01098 and MPMX20_01099 are separated by 212 nucleotides MPMX20_01099 and MPMX20_01100 are separated by 137 nucleotides
MPMX20_01097: MPMX20_01097 - N5-carboxyaminoimidazole ribonucleotide synthase, at 1,157,710 to 1,158,777
_01097
MPMX20_01098: MPMX20_01098 - N5-carboxyaminoimidazole ribonucleotide mutase, at 1,158,774 to 1,159,283
_01098
MPMX20_01099: MPMX20_01099 - hypothetical protein, at 1,159,496 to 1,159,705
_01099
MPMX20_01100: MPMX20_01100 - UDP-2,3-diacylglucosamine hydrolase, at 1,159,843 to 1,160,565
_01100
Position (kb)
1158
1159
1160 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1157.843 kb on - strand, within MPMX20_01097 at 1157.889 kb on + strand, within MPMX20_01097 at 1157.997 kb on + strand, within MPMX20_01097 at 1158.051 kb on - strand, within MPMX20_01097 at 1158.057 kb on + strand, within MPMX20_01097 at 1158.057 kb on + strand, within MPMX20_01097 at 1158.144 kb on - strand, within MPMX20_01097 at 1158.174 kb on + strand, within MPMX20_01097 at 1158.179 kb on + strand, within MPMX20_01097 at 1158.179 kb on + strand, within MPMX20_01097 at 1158.187 kb on - strand, within MPMX20_01097 at 1158.239 kb on - strand, within MPMX20_01097 at 1158.263 kb on - strand, within MPMX20_01097 at 1158.270 kb on - strand, within MPMX20_01097 at 1158.299 kb on + strand, within MPMX20_01097 at 1158.318 kb on + strand, within MPMX20_01097 at 1158.326 kb on - strand, within MPMX20_01097 at 1158.326 kb on - strand, within MPMX20_01097 at 1158.387 kb on + strand, within MPMX20_01097 at 1158.387 kb on + strand, within MPMX20_01097 at 1158.387 kb on + strand, within MPMX20_01097 at 1158.395 kb on - strand, within MPMX20_01097 at 1158.395 kb on - strand, within MPMX20_01097 at 1158.609 kb on - strand, within MPMX20_01097 at 1158.709 kb on - strand at 1158.801 kb on + strand at 1158.801 kb on + strand at 1158.816 kb on + strand at 1158.816 kb on + strand at 1158.816 kb on + strand at 1158.857 kb on - strand, within MPMX20_01098 at 1158.972 kb on - strand, within MPMX20_01098 at 1158.987 kb on + strand, within MPMX20_01098 at 1158.987 kb on + strand, within MPMX20_01098 at 1158.995 kb on - strand, within MPMX20_01098 at 1159.014 kb on + strand, within MPMX20_01098 at 1159.069 kb on - strand, within MPMX20_01098 at 1159.091 kb on + strand, within MPMX20_01098 at 1159.141 kb on + strand, within MPMX20_01098 at 1159.149 kb on - strand, within MPMX20_01098 at 1159.149 kb on - strand, within MPMX20_01098 at 1159.231 kb on + strand, within MPMX20_01098 at 1159.239 kb on - strand at 1159.515 kb on - strand at 1159.612 kb on + strand, within MPMX20_01099 at 1159.615 kb on - strand, within MPMX20_01099 at 1159.626 kb on + strand, within MPMX20_01099 at 1159.747 kb on + strand at 1159.781 kb on - strand at 1159.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 1,157,843 - MPMX20_01097 0.12 -2.4 1,157,889 + MPMX20_01097 0.17 -2.1 1,157,997 + MPMX20_01097 0.27 -0.1 1,158,051 - MPMX20_01097 0.32 -0.7 1,158,057 + MPMX20_01097 0.32 -1.8 1,158,057 + MPMX20_01097 0.32 -1.8 1,158,144 - MPMX20_01097 0.41 +1.8 1,158,174 + MPMX20_01097 0.43 -2.2 1,158,179 + MPMX20_01097 0.44 +0.9 1,158,179 + MPMX20_01097 0.44 -2.0 1,158,187 - MPMX20_01097 0.45 +1.1 1,158,239 - MPMX20_01097 0.50 -1.6 1,158,263 - MPMX20_01097 0.52 -2.6 1,158,270 - MPMX20_01097 0.52 -1.4 1,158,299 + MPMX20_01097 0.55 -1.7 1,158,318 + MPMX20_01097 0.57 -0.8 1,158,326 - MPMX20_01097 0.58 +1.0 1,158,326 - MPMX20_01097 0.58 -1.1 1,158,387 + MPMX20_01097 0.63 -0.7 1,158,387 + MPMX20_01097 0.63 -2.1 1,158,387 + MPMX20_01097 0.63 +0.9 1,158,395 - MPMX20_01097 0.64 -1.3 1,158,395 - MPMX20_01097 0.64 +3.5 1,158,609 - MPMX20_01097 0.84 -1.4 1,158,709 - -0.3 1,158,801 + +0.2 1,158,801 + +0.5 1,158,816 + +0.2 1,158,816 + +1.5 1,158,816 + -1.4 1,158,857 - MPMX20_01098 0.16 -0.5 1,158,972 - MPMX20_01098 0.39 -2.3 1,158,987 + MPMX20_01098 0.42 +4.3 1,158,987 + MPMX20_01098 0.42 +1.5 1,158,995 - MPMX20_01098 0.43 -2.0 1,159,014 + MPMX20_01098 0.47 -2.0 1,159,069 - MPMX20_01098 0.58 -2.5 1,159,091 + MPMX20_01098 0.62 -0.8 1,159,141 + MPMX20_01098 0.72 -0.7 1,159,149 - MPMX20_01098 0.74 -0.7 1,159,149 - MPMX20_01098 0.74 -2.3 1,159,231 + MPMX20_01098 0.90 +0.5 1,159,239 - -0.5 1,159,515 - -2.6 1,159,612 + MPMX20_01099 0.55 +0.8 1,159,615 - MPMX20_01099 0.57 -1.7 1,159,626 + MPMX20_01099 0.62 +1.4 1,159,747 + +1.2 1,159,781 - -0.1 1,159,871 - +0.5
Or see this region's nucleotide sequence