Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01019 and MPMX20_01020 are separated by 11 nucleotides MPMX20_01020 and MPMX20_01021 overlap by 1 nucleotides MPMX20_01021 and MPMX20_01022 are separated by 88 nucleotides
MPMX20_01019: MPMX20_01019 - Protoheme IX farnesyltransferase, at 1,071,940 to 1,072,827
_01019
MPMX20_01020: MPMX20_01020 - Cytochrome bo(3) ubiquinol oxidase subunit 4, at 1,072,839 to 1,073,165
_01020
MPMX20_01021: MPMX20_01021 - Cytochrome bo(3) ubiquinol oxidase subunit 3, at 1,073,165 to 1,073,680
_01021
MPMX20_01022: MPMX20_01022 - Cytochrome bo(3) ubiquinol oxidase subunit 1, at 1,073,769 to 1,075,760
_01022
Position (kb)
1072
1073
1074 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1071.932 kb on + strand at 1071.932 kb on + strand at 1071.968 kb on - strand at 1071.968 kb on - strand at 1072.086 kb on + strand, within MPMX20_01019 at 1072.086 kb on + strand, within MPMX20_01019 at 1072.094 kb on - strand, within MPMX20_01019 at 1072.109 kb on - strand, within MPMX20_01019 at 1072.109 kb on - strand, within MPMX20_01019 at 1072.247 kb on + strand, within MPMX20_01019 at 1072.303 kb on - strand, within MPMX20_01019 at 1072.328 kb on - strand, within MPMX20_01019 at 1072.352 kb on - strand, within MPMX20_01019 at 1072.504 kb on + strand, within MPMX20_01019 at 1072.523 kb on + strand, within MPMX20_01019 at 1072.603 kb on - strand, within MPMX20_01019 at 1072.694 kb on + strand, within MPMX20_01019 at 1072.697 kb on - strand, within MPMX20_01019 at 1072.697 kb on - strand, within MPMX20_01019 at 1072.709 kb on + strand, within MPMX20_01019 at 1072.735 kb on + strand, within MPMX20_01019 at 1072.846 kb on + strand at 1073.130 kb on + strand, within MPMX20_01020 at 1073.130 kb on + strand, within MPMX20_01020 at 1073.138 kb on - strand at 1073.204 kb on + strand at 1073.212 kb on - strand at 1073.260 kb on + strand, within MPMX20_01021 at 1073.278 kb on - strand, within MPMX20_01021 at 1073.315 kb on + strand, within MPMX20_01021 at 1073.346 kb on + strand, within MPMX20_01021 at 1073.354 kb on - strand, within MPMX20_01021 at 1073.354 kb on - strand, within MPMX20_01021 at 1073.483 kb on - strand, within MPMX20_01021 at 1073.528 kb on + strand, within MPMX20_01021 at 1073.655 kb on + strand at 1073.741 kb on + strand at 1073.746 kb on + strand at 1073.846 kb on + strand at 1073.856 kb on + strand at 1073.856 kb on + strand at 1073.875 kb on - strand at 1073.926 kb on + strand at 1073.926 kb on + strand at 1074.133 kb on - strand, within MPMX20_01022 at 1074.133 kb on - strand, within MPMX20_01022 at 1074.136 kb on + strand, within MPMX20_01022 at 1074.139 kb on - strand, within MPMX20_01022 at 1074.149 kb on - strand, within MPMX20_01022 at 1074.157 kb on + strand, within MPMX20_01022 at 1074.157 kb on + strand, within MPMX20_01022 at 1074.165 kb on - strand, within MPMX20_01022 at 1074.165 kb on - strand, within MPMX20_01022
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 1,071,932 + -1.0 1,071,932 + +0.4 1,071,968 - +1.3 1,071,968 - -0.3 1,072,086 + MPMX20_01019 0.16 -1.0 1,072,086 + MPMX20_01019 0.16 -1.1 1,072,094 - MPMX20_01019 0.17 +0.2 1,072,109 - MPMX20_01019 0.19 -1.5 1,072,109 - MPMX20_01019 0.19 -0.3 1,072,247 + MPMX20_01019 0.35 -1.4 1,072,303 - MPMX20_01019 0.41 +2.5 1,072,328 - MPMX20_01019 0.44 -1.9 1,072,352 - MPMX20_01019 0.46 -2.0 1,072,504 + MPMX20_01019 0.64 -2.8 1,072,523 + MPMX20_01019 0.66 -0.4 1,072,603 - MPMX20_01019 0.75 -2.9 1,072,694 + MPMX20_01019 0.85 +0.5 1,072,697 - MPMX20_01019 0.85 -0.3 1,072,697 - MPMX20_01019 0.85 -2.5 1,072,709 + MPMX20_01019 0.87 -1.5 1,072,735 + MPMX20_01019 0.90 -0.7 1,072,846 + -3.5 1,073,130 + MPMX20_01020 0.89 -1.7 1,073,130 + MPMX20_01020 0.89 -2.7 1,073,138 - -0.1 1,073,204 + +0.4 1,073,212 - +1.5 1,073,260 + MPMX20_01021 0.18 +0.4 1,073,278 - MPMX20_01021 0.22 -2.5 1,073,315 + MPMX20_01021 0.29 -3.2 1,073,346 + MPMX20_01021 0.35 -2.5 1,073,354 - MPMX20_01021 0.37 -0.7 1,073,354 - MPMX20_01021 0.37 +1.5 1,073,483 - MPMX20_01021 0.62 +0.5 1,073,528 + MPMX20_01021 0.70 -1.1 1,073,655 + -1.9 1,073,741 + -2.4 1,073,746 + -1.0 1,073,846 + -1.8 1,073,856 + -2.5 1,073,856 + -1.0 1,073,875 - +0.5 1,073,926 + -1.9 1,073,926 + -3.3 1,074,133 - MPMX20_01022 0.18 -0.3 1,074,133 - MPMX20_01022 0.18 -1.0 1,074,136 + MPMX20_01022 0.18 -2.2 1,074,139 - MPMX20_01022 0.19 -1.8 1,074,149 - MPMX20_01022 0.19 -1.8 1,074,157 + MPMX20_01022 0.19 +0.5 1,074,157 + MPMX20_01022 0.19 +0.9 1,074,165 - MPMX20_01022 0.20 -2.4 1,074,165 - MPMX20_01022 0.20 -1.8
Or see this region's nucleotide sequence