Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01020

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01019 and MPMX20_01020 are separated by 11 nucleotidesMPMX20_01020 and MPMX20_01021 overlap by 1 nucleotidesMPMX20_01021 and MPMX20_01022 are separated by 88 nucleotides MPMX20_01019: MPMX20_01019 - Protoheme IX farnesyltransferase, at 1,071,940 to 1,072,827 _01019 MPMX20_01020: MPMX20_01020 - Cytochrome bo(3) ubiquinol oxidase subunit 4, at 1,072,839 to 1,073,165 _01020 MPMX20_01021: MPMX20_01021 - Cytochrome bo(3) ubiquinol oxidase subunit 3, at 1,073,165 to 1,073,680 _01021 MPMX20_01022: MPMX20_01022 - Cytochrome bo(3) ubiquinol oxidase subunit 1, at 1,073,769 to 1,075,760 _01022 Position (kb) 1072 1073 1074Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1071.932 kb on + strandat 1071.932 kb on + strandat 1071.968 kb on - strandat 1071.968 kb on - strandat 1072.086 kb on + strand, within MPMX20_01019at 1072.086 kb on + strand, within MPMX20_01019at 1072.094 kb on - strand, within MPMX20_01019at 1072.109 kb on - strand, within MPMX20_01019at 1072.109 kb on - strand, within MPMX20_01019at 1072.247 kb on + strand, within MPMX20_01019at 1072.303 kb on - strand, within MPMX20_01019at 1072.328 kb on - strand, within MPMX20_01019at 1072.352 kb on - strand, within MPMX20_01019at 1072.504 kb on + strand, within MPMX20_01019at 1072.523 kb on + strand, within MPMX20_01019at 1072.603 kb on - strand, within MPMX20_01019at 1072.694 kb on + strand, within MPMX20_01019at 1072.697 kb on - strand, within MPMX20_01019at 1072.697 kb on - strand, within MPMX20_01019at 1072.709 kb on + strand, within MPMX20_01019at 1072.735 kb on + strand, within MPMX20_01019at 1072.846 kb on + strandat 1073.130 kb on + strand, within MPMX20_01020at 1073.130 kb on + strand, within MPMX20_01020at 1073.138 kb on - strandat 1073.204 kb on + strandat 1073.212 kb on - strandat 1073.260 kb on + strand, within MPMX20_01021at 1073.278 kb on - strand, within MPMX20_01021at 1073.315 kb on + strand, within MPMX20_01021at 1073.346 kb on + strand, within MPMX20_01021at 1073.354 kb on - strand, within MPMX20_01021at 1073.354 kb on - strand, within MPMX20_01021at 1073.483 kb on - strand, within MPMX20_01021at 1073.528 kb on + strand, within MPMX20_01021at 1073.655 kb on + strandat 1073.741 kb on + strandat 1073.746 kb on + strandat 1073.846 kb on + strandat 1073.856 kb on + strandat 1073.856 kb on + strandat 1073.875 kb on - strandat 1073.926 kb on + strandat 1073.926 kb on + strandat 1074.133 kb on - strand, within MPMX20_01022at 1074.133 kb on - strand, within MPMX20_01022at 1074.136 kb on + strand, within MPMX20_01022at 1074.139 kb on - strand, within MPMX20_01022at 1074.149 kb on - strand, within MPMX20_01022at 1074.157 kb on + strand, within MPMX20_01022at 1074.157 kb on + strand, within MPMX20_01022at 1074.165 kb on - strand, within MPMX20_01022at 1074.165 kb on - strand, within MPMX20_01022

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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1,071,932 + -1.0
1,071,932 + +0.4
1,071,968 - +1.3
1,071,968 - -0.3
1,072,086 + MPMX20_01019 0.16 -1.0
1,072,086 + MPMX20_01019 0.16 -1.1
1,072,094 - MPMX20_01019 0.17 +0.2
1,072,109 - MPMX20_01019 0.19 -1.5
1,072,109 - MPMX20_01019 0.19 -0.3
1,072,247 + MPMX20_01019 0.35 -1.4
1,072,303 - MPMX20_01019 0.41 +2.5
1,072,328 - MPMX20_01019 0.44 -1.9
1,072,352 - MPMX20_01019 0.46 -2.0
1,072,504 + MPMX20_01019 0.64 -2.8
1,072,523 + MPMX20_01019 0.66 -0.4
1,072,603 - MPMX20_01019 0.75 -2.9
1,072,694 + MPMX20_01019 0.85 +0.5
1,072,697 - MPMX20_01019 0.85 -0.3
1,072,697 - MPMX20_01019 0.85 -2.5
1,072,709 + MPMX20_01019 0.87 -1.5
1,072,735 + MPMX20_01019 0.90 -0.7
1,072,846 + -3.5
1,073,130 + MPMX20_01020 0.89 -1.7
1,073,130 + MPMX20_01020 0.89 -2.7
1,073,138 - -0.1
1,073,204 + +0.4
1,073,212 - +1.5
1,073,260 + MPMX20_01021 0.18 +0.4
1,073,278 - MPMX20_01021 0.22 -2.5
1,073,315 + MPMX20_01021 0.29 -3.2
1,073,346 + MPMX20_01021 0.35 -2.5
1,073,354 - MPMX20_01021 0.37 -0.7
1,073,354 - MPMX20_01021 0.37 +1.5
1,073,483 - MPMX20_01021 0.62 +0.5
1,073,528 + MPMX20_01021 0.70 -1.1
1,073,655 + -1.9
1,073,741 + -2.4
1,073,746 + -1.0
1,073,846 + -1.8
1,073,856 + -2.5
1,073,856 + -1.0
1,073,875 - +0.5
1,073,926 + -1.9
1,073,926 + -3.3
1,074,133 - MPMX20_01022 0.18 -0.3
1,074,133 - MPMX20_01022 0.18 -1.0
1,074,136 + MPMX20_01022 0.18 -2.2
1,074,139 - MPMX20_01022 0.19 -1.8
1,074,149 - MPMX20_01022 0.19 -1.8
1,074,157 + MPMX20_01022 0.19 +0.5
1,074,157 + MPMX20_01022 0.19 +0.9
1,074,165 - MPMX20_01022 0.20 -2.4
1,074,165 - MPMX20_01022 0.20 -1.8

Or see this region's nucleotide sequence