Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00919 and MPMX20_00920 overlap by 1 nucleotides MPMX20_00920 and MPMX20_00921 are separated by 101 nucleotides
MPMX20_00919: MPMX20_00919 - Na(+)-translocating NADH-quinone reductase subunit F, at 967,721 to 968,944
_00919
MPMX20_00920: MPMX20_00920 - hypothetical protein, at 968,944 to 969,147
_00920
MPMX20_00921: MPMX20_00921 - DNA polymerase IV, at 969,249 to 970,307
_00921
Position (kb) 968
969
970 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 967.949 kb on - strand, within MPMX20_00919 at 967.975 kb on + strand, within MPMX20_00919 at 968.027 kb on + strand, within MPMX20_00919 at 968.032 kb on + strand, within MPMX20_00919 at 968.039 kb on + strand, within MPMX20_00919 at 968.171 kb on - strand, within MPMX20_00919 at 968.208 kb on - strand, within MPMX20_00919 at 968.258 kb on + strand, within MPMX20_00919 at 968.278 kb on + strand, within MPMX20_00919 at 968.286 kb on - strand, within MPMX20_00919 at 968.372 kb on + strand, within MPMX20_00919 at 968.372 kb on + strand, within MPMX20_00919 at 968.372 kb on + strand, within MPMX20_00919 at 968.422 kb on + strand, within MPMX20_00919 at 968.504 kb on - strand, within MPMX20_00919 at 968.602 kb on + strand, within MPMX20_00919 at 968.646 kb on + strand, within MPMX20_00919 at 968.778 kb on - strand, within MPMX20_00919 at 968.861 kb on + strand at 968.861 kb on + strand at 969.019 kb on - strand, within MPMX20_00920 at 969.029 kb on - strand, within MPMX20_00920 at 969.041 kb on + strand, within MPMX20_00920 at 969.044 kb on - strand, within MPMX20_00920 at 969.044 kb on - strand, within MPMX20_00920 at 969.086 kb on + strand, within MPMX20_00920 at 969.086 kb on + strand, within MPMX20_00920 at 969.088 kb on + strand, within MPMX20_00920 at 969.094 kb on - strand, within MPMX20_00920 at 969.147 kb on - strand at 969.156 kb on + strand at 969.169 kb on + strand at 969.177 kb on - strand at 969.182 kb on + strand at 969.240 kb on + strand at 969.302 kb on - strand at 969.357 kb on - strand, within MPMX20_00921 at 969.357 kb on - strand, within MPMX20_00921 at 969.357 kb on - strand, within MPMX20_00921 at 969.362 kb on - strand, within MPMX20_00921 at 969.376 kb on - strand, within MPMX20_00921 at 969.380 kb on + strand, within MPMX20_00921 at 969.380 kb on + strand, within MPMX20_00921 at 969.388 kb on - strand, within MPMX20_00921 at 969.388 kb on - strand, within MPMX20_00921 at 969.388 kb on - strand, within MPMX20_00921 at 969.388 kb on - strand, within MPMX20_00921 at 969.388 kb on - strand, within MPMX20_00921 at 969.407 kb on + strand, within MPMX20_00921 at 969.420 kb on - strand, within MPMX20_00921 at 969.424 kb on + strand, within MPMX20_00921 at 969.440 kb on + strand, within MPMX20_00921 at 969.526 kb on + strand, within MPMX20_00921 at 969.534 kb on - strand, within MPMX20_00921 at 969.554 kb on + strand, within MPMX20_00921 at 969.562 kb on - strand, within MPMX20_00921 at 969.565 kb on + strand, within MPMX20_00921 at 969.582 kb on + strand, within MPMX20_00921 at 969.585 kb on - strand, within MPMX20_00921 at 969.587 kb on + strand, within MPMX20_00921 at 969.609 kb on - strand, within MPMX20_00921 at 969.636 kb on + strand, within MPMX20_00921 at 969.703 kb on + strand, within MPMX20_00921 at 969.731 kb on + strand, within MPMX20_00921 at 969.734 kb on - strand, within MPMX20_00921 at 969.750 kb on - strand, within MPMX20_00921 at 969.750 kb on - strand, within MPMX20_00921 at 969.753 kb on + strand, within MPMX20_00921 at 969.761 kb on - strand, within MPMX20_00921 at 969.889 kb on - strand, within MPMX20_00921 at 969.931 kb on + strand, within MPMX20_00921 at 969.939 kb on - strand, within MPMX20_00921 at 969.953 kb on - strand, within MPMX20_00921 at 969.973 kb on - strand, within MPMX20_00921 at 969.995 kb on + strand, within MPMX20_00921 at 970.010 kb on + strand, within MPMX20_00921 at 970.030 kb on - strand, within MPMX20_00921 at 970.031 kb on + strand, within MPMX20_00921 at 970.049 kb on - strand, within MPMX20_00921
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 967,949 - MPMX20_00919 0.19 -0.8 967,975 + MPMX20_00919 0.21 -0.6 968,027 + MPMX20_00919 0.25 +0.9 968,032 + MPMX20_00919 0.25 +0.4 968,039 + MPMX20_00919 0.26 +0.1 968,171 - MPMX20_00919 0.37 -2.1 968,208 - MPMX20_00919 0.40 +0.7 968,258 + MPMX20_00919 0.44 -1.4 968,278 + MPMX20_00919 0.46 -0.3 968,286 - MPMX20_00919 0.46 +2.3 968,372 + MPMX20_00919 0.53 -1.3 968,372 + MPMX20_00919 0.53 -1.3 968,372 + MPMX20_00919 0.53 +2.5 968,422 + MPMX20_00919 0.57 +0.6 968,504 - MPMX20_00919 0.64 +0.9 968,602 + MPMX20_00919 0.72 -0.2 968,646 + MPMX20_00919 0.76 -0.9 968,778 - MPMX20_00919 0.86 +8.7 968,861 + -3.2 968,861 + +0.2 969,019 - MPMX20_00920 0.37 +0.8 969,029 - MPMX20_00920 0.42 +0.3 969,041 + MPMX20_00920 0.48 -0.8 969,044 - MPMX20_00920 0.49 +0.9 969,044 - MPMX20_00920 0.49 -2.5 969,086 + MPMX20_00920 0.70 +0.5 969,086 + MPMX20_00920 0.70 +1.6 969,088 + MPMX20_00920 0.71 +0.2 969,094 - MPMX20_00920 0.74 -0.1 969,147 - -1.8 969,156 + +1.0 969,169 + -1.3 969,177 - -0.3 969,182 + +1.4 969,240 + -0.7 969,302 - +0.9 969,357 - MPMX20_00921 0.10 -2.4 969,357 - MPMX20_00921 0.10 -0.3 969,357 - MPMX20_00921 0.10 -2.3 969,362 - MPMX20_00921 0.11 -1.0 969,376 - MPMX20_00921 0.12 -3.4 969,380 + MPMX20_00921 0.12 -1.4 969,380 + MPMX20_00921 0.12 +1.5 969,388 - MPMX20_00921 0.13 +0.3 969,388 - MPMX20_00921 0.13 +1.6 969,388 - MPMX20_00921 0.13 +0.6 969,388 - MPMX20_00921 0.13 -3.4 969,388 - MPMX20_00921 0.13 -0.5 969,407 + MPMX20_00921 0.15 -0.9 969,420 - MPMX20_00921 0.16 +1.2 969,424 + MPMX20_00921 0.17 -1.6 969,440 + MPMX20_00921 0.18 -2.5 969,526 + MPMX20_00921 0.26 -2.1 969,534 - MPMX20_00921 0.27 -1.6 969,554 + MPMX20_00921 0.29 -2.0 969,562 - MPMX20_00921 0.30 -2.6 969,565 + MPMX20_00921 0.30 +0.0 969,582 + MPMX20_00921 0.31 +0.5 969,585 - MPMX20_00921 0.32 -0.9 969,587 + MPMX20_00921 0.32 +1.3 969,609 - MPMX20_00921 0.34 -3.4 969,636 + MPMX20_00921 0.37 +1.7 969,703 + MPMX20_00921 0.43 +1.2 969,731 + MPMX20_00921 0.46 -0.8 969,734 - MPMX20_00921 0.46 -3.1 969,750 - MPMX20_00921 0.47 +0.2 969,750 - MPMX20_00921 0.47 -0.5 969,753 + MPMX20_00921 0.48 +0.7 969,761 - MPMX20_00921 0.48 -2.0 969,889 - MPMX20_00921 0.60 -1.2 969,931 + MPMX20_00921 0.64 +0.9 969,939 - MPMX20_00921 0.65 -0.8 969,953 - MPMX20_00921 0.66 -0.8 969,973 - MPMX20_00921 0.68 -1.2 969,995 + MPMX20_00921 0.70 +1.6 970,010 + MPMX20_00921 0.72 +0.6 970,030 - MPMX20_00921 0.74 -1.3 970,031 + MPMX20_00921 0.74 -2.0 970,049 - MPMX20_00921 0.76 +0.3
Or see this region's nucleotide sequence