Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00914 and MPMX20_00915 are separated by 3 nucleotides MPMX20_00915 and MPMX20_00916 overlap by 8 nucleotides MPMX20_00916 and MPMX20_00917 overlap by 8 nucleotides
MPMX20_00914: MPMX20_00914 - Na(+)-translocating NADH-quinone reductase subunit A, at 963,107 to 964,450
_00914
MPMX20_00915: MPMX20_00915 - Na(+)-translocating NADH-quinone reductase subunit B, at 964,454 to 965,689
_00915
MPMX20_00916: MPMX20_00916 - Na(+)-translocating NADH-quinone reductase subunit C, at 965,682 to 966,476
_00916
MPMX20_00917: MPMX20_00917 - Na(+)-translocating NADH-quinone reductase subunit D, at 966,469 to 967,107
_00917
Position (kb) 964
965
966 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 963.574 kb on - strand, within MPMX20_00914 at 963.578 kb on - strand, within MPMX20_00914 at 963.583 kb on - strand, within MPMX20_00914 at 963.585 kb on + strand, within MPMX20_00914 at 963.593 kb on - strand, within MPMX20_00914 at 963.644 kb on + strand, within MPMX20_00914 at 963.644 kb on + strand, within MPMX20_00914 at 963.652 kb on - strand, within MPMX20_00914 at 963.653 kb on + strand, within MPMX20_00914 at 963.653 kb on + strand, within MPMX20_00914 at 963.670 kb on + strand, within MPMX20_00914 at 963.671 kb on + strand, within MPMX20_00914 at 963.685 kb on + strand, within MPMX20_00914 at 963.709 kb on - strand, within MPMX20_00914 at 963.786 kb on + strand, within MPMX20_00914 at 963.814 kb on + strand, within MPMX20_00914 at 963.822 kb on - strand, within MPMX20_00914 at 963.875 kb on - strand, within MPMX20_00914 at 963.882 kb on - strand, within MPMX20_00914 at 964.048 kb on + strand, within MPMX20_00914 at 964.048 kb on + strand, within MPMX20_00914 at 964.056 kb on - strand, within MPMX20_00914 at 964.083 kb on - strand, within MPMX20_00914 at 964.083 kb on - strand, within MPMX20_00914 at 964.129 kb on - strand, within MPMX20_00914 at 964.136 kb on + strand, within MPMX20_00914 at 964.155 kb on + strand, within MPMX20_00914 at 964.155 kb on + strand, within MPMX20_00914 at 964.163 kb on - strand, within MPMX20_00914 at 964.163 kb on - strand, within MPMX20_00914 at 964.168 kb on - strand, within MPMX20_00914 at 964.210 kb on - strand, within MPMX20_00914 at 964.281 kb on + strand, within MPMX20_00914 at 964.289 kb on - strand, within MPMX20_00914 at 964.289 kb on - strand, within MPMX20_00914 at 964.328 kb on + strand at 964.341 kb on - strand at 964.346 kb on - strand at 964.369 kb on + strand at 964.373 kb on + strand at 964.377 kb on - strand at 964.421 kb on + strand at 964.421 kb on + strand at 964.421 kb on + strand at 964.421 kb on + strand at 964.421 kb on + strand at 964.421 kb on + strand at 964.421 kb on + strand at 964.421 kb on + strand at 964.421 kb on + strand at 964.429 kb on - strand at 964.429 kb on - strand at 964.453 kb on - strand at 964.453 kb on - strand at 964.458 kb on + strand at 964.458 kb on + strand at 964.557 kb on + strand at 964.557 kb on + strand at 964.589 kb on - strand, within MPMX20_00915 at 964.627 kb on + strand, within MPMX20_00915 at 964.640 kb on - strand, within MPMX20_00915 at 964.654 kb on + strand, within MPMX20_00915 at 964.654 kb on + strand, within MPMX20_00915 at 964.654 kb on + strand, within MPMX20_00915 at 964.654 kb on + strand, within MPMX20_00915 at 964.654 kb on + strand, within MPMX20_00915 at 964.654 kb on + strand, within MPMX20_00915 at 964.654 kb on + strand, within MPMX20_00915 at 964.654 kb on + strand, within MPMX20_00915 at 964.654 kb on + strand, within MPMX20_00915 at 964.654 kb on + strand, within MPMX20_00915 at 964.662 kb on - strand, within MPMX20_00915 at 964.662 kb on - strand, within MPMX20_00915 at 964.674 kb on - strand, within MPMX20_00915 at 964.679 kb on - strand, within MPMX20_00915 at 964.684 kb on - strand, within MPMX20_00915 at 964.697 kb on - strand, within MPMX20_00915 at 964.753 kb on - strand, within MPMX20_00915 at 964.753 kb on - strand, within MPMX20_00915 at 964.761 kb on - strand, within MPMX20_00915 at 964.763 kb on + strand, within MPMX20_00915 at 964.763 kb on + strand, within MPMX20_00915 at 964.811 kb on - strand, within MPMX20_00915 at 964.848 kb on + strand, within MPMX20_00915 at 964.878 kb on + strand, within MPMX20_00915 at 964.982 kb on - strand, within MPMX20_00915 at 965.143 kb on + strand, within MPMX20_00915 at 965.227 kb on - strand, within MPMX20_00915 at 965.356 kb on - strand, within MPMX20_00915 at 965.356 kb on - strand, within MPMX20_00915 at 965.373 kb on - strand, within MPMX20_00915 at 965.524 kb on - strand, within MPMX20_00915 at 965.555 kb on + strand, within MPMX20_00915 at 965.578 kb on + strand at 965.591 kb on + strand at 965.661 kb on + strand at 965.782 kb on + strand, within MPMX20_00916 at 965.805 kb on - strand, within MPMX20_00916 at 965.816 kb on + strand, within MPMX20_00916 at 965.872 kb on - strand, within MPMX20_00916 at 965.872 kb on - strand, within MPMX20_00916 at 965.875 kb on - strand, within MPMX20_00916 at 965.877 kb on - strand, within MPMX20_00916 at 965.881 kb on + strand, within MPMX20_00916 at 965.913 kb on + strand, within MPMX20_00916 at 965.997 kb on - strand, within MPMX20_00916 at 966.006 kb on + strand, within MPMX20_00916 at 966.054 kb on - strand, within MPMX20_00916 at 966.149 kb on - strand, within MPMX20_00916 at 966.149 kb on - strand, within MPMX20_00916 at 966.149 kb on - strand, within MPMX20_00916 at 966.156 kb on - strand, within MPMX20_00916 at 966.156 kb on - strand, within MPMX20_00916 at 966.187 kb on + strand, within MPMX20_00916 at 966.188 kb on - strand, within MPMX20_00916 at 966.196 kb on + strand, within MPMX20_00916 at 966.214 kb on + strand, within MPMX20_00916 at 966.226 kb on + strand, within MPMX20_00916 at 966.276 kb on + strand, within MPMX20_00916 at 966.309 kb on - strand, within MPMX20_00916 at 966.359 kb on + strand, within MPMX20_00916 at 966.385 kb on + strand, within MPMX20_00916 at 966.414 kb on + strand at 966.542 kb on - strand, within MPMX20_00917 at 966.542 kb on - strand, within MPMX20_00917 at 966.550 kb on - strand, within MPMX20_00917 at 966.557 kb on - strand, within MPMX20_00917 at 966.557 kb on - strand, within MPMX20_00917 at 966.603 kb on + strand, within MPMX20_00917 at 966.603 kb on + strand, within MPMX20_00917 at 966.611 kb on - strand, within MPMX20_00917 at 966.611 kb on - strand, within MPMX20_00917 at 966.611 kb on - strand, within MPMX20_00917 at 966.611 kb on - strand, within MPMX20_00917 at 966.611 kb on - strand, within MPMX20_00917 at 966.627 kb on + strand, within MPMX20_00917 at 966.683 kb on + strand, within MPMX20_00917
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 963,574 - MPMX20_00914 0.35 -1.1 963,578 - MPMX20_00914 0.35 -0.7 963,583 - MPMX20_00914 0.35 -0.7 963,585 + MPMX20_00914 0.36 +1.1 963,593 - MPMX20_00914 0.36 +0.3 963,644 + MPMX20_00914 0.40 +2.4 963,644 + MPMX20_00914 0.40 +1.1 963,652 - MPMX20_00914 0.41 -1.5 963,653 + MPMX20_00914 0.41 -1.6 963,653 + MPMX20_00914 0.41 -2.2 963,670 + MPMX20_00914 0.42 -1.6 963,671 + MPMX20_00914 0.42 +0.2 963,685 + MPMX20_00914 0.43 -2.6 963,709 - MPMX20_00914 0.45 +1.9 963,786 + MPMX20_00914 0.51 -1.5 963,814 + MPMX20_00914 0.53 -0.8 963,822 - MPMX20_00914 0.53 +2.7 963,875 - MPMX20_00914 0.57 +1.0 963,882 - MPMX20_00914 0.58 -0.4 964,048 + MPMX20_00914 0.70 -1.0 964,048 + MPMX20_00914 0.70 -0.5 964,056 - MPMX20_00914 0.71 -1.3 964,083 - MPMX20_00914 0.73 -2.4 964,083 - MPMX20_00914 0.73 -0.8 964,129 - MPMX20_00914 0.76 -0.8 964,136 + MPMX20_00914 0.77 +0.1 964,155 + MPMX20_00914 0.78 -2.5 964,155 + MPMX20_00914 0.78 -1.0 964,163 - MPMX20_00914 0.79 +0.0 964,163 - MPMX20_00914 0.79 -0.1 964,168 - MPMX20_00914 0.79 -0.1 964,210 - MPMX20_00914 0.82 +0.2 964,281 + MPMX20_00914 0.87 -0.9 964,289 - MPMX20_00914 0.88 -1.2 964,289 - MPMX20_00914 0.88 -2.5 964,328 + +1.2 964,341 - -0.6 964,346 - +1.0 964,369 + -0.5 964,373 + -1.0 964,377 - -0.1 964,421 + -0.1 964,421 + +1.0 964,421 + +0.4 964,421 + +0.9 964,421 + +0.3 964,421 + -1.8 964,421 + -0.2 964,421 + -1.9 964,421 + -0.1 964,429 - -0.3 964,429 - +2.0 964,453 - -3.0 964,453 - -0.3 964,458 + -1.9 964,458 + -1.4 964,557 + -1.7 964,557 + +0.8 964,589 - MPMX20_00915 0.11 -1.6 964,627 + MPMX20_00915 0.14 +4.5 964,640 - MPMX20_00915 0.15 +1.5 964,654 + MPMX20_00915 0.16 -1.1 964,654 + MPMX20_00915 0.16 -0.8 964,654 + MPMX20_00915 0.16 +0.2 964,654 + MPMX20_00915 0.16 -1.4 964,654 + MPMX20_00915 0.16 -0.3 964,654 + MPMX20_00915 0.16 +0.7 964,654 + MPMX20_00915 0.16 +0.9 964,654 + MPMX20_00915 0.16 -3.1 964,654 + MPMX20_00915 0.16 -2.7 964,654 + MPMX20_00915 0.16 +0.2 964,662 - MPMX20_00915 0.17 -1.5 964,662 - MPMX20_00915 0.17 -2.3 964,674 - MPMX20_00915 0.18 +2.1 964,679 - MPMX20_00915 0.18 +0.2 964,684 - MPMX20_00915 0.19 +0.0 964,697 - MPMX20_00915 0.20 +0.1 964,753 - MPMX20_00915 0.24 -0.3 964,753 - MPMX20_00915 0.24 -0.0 964,761 - MPMX20_00915 0.25 -1.0 964,763 + MPMX20_00915 0.25 -3.4 964,763 + MPMX20_00915 0.25 -0.3 964,811 - MPMX20_00915 0.29 +0.5 964,848 + MPMX20_00915 0.32 -2.1 964,878 + MPMX20_00915 0.34 +1.1 964,982 - MPMX20_00915 0.43 +0.9 965,143 + MPMX20_00915 0.56 +2.0 965,227 - MPMX20_00915 0.63 -0.8 965,356 - MPMX20_00915 0.73 -0.3 965,356 - MPMX20_00915 0.73 -2.0 965,373 - MPMX20_00915 0.74 +0.0 965,524 - MPMX20_00915 0.87 +0.8 965,555 + MPMX20_00915 0.89 -2.3 965,578 + -0.6 965,591 + +1.9 965,661 + -0.3 965,782 + MPMX20_00916 0.13 -0.1 965,805 - MPMX20_00916 0.15 -1.0 965,816 + MPMX20_00916 0.17 +0.7 965,872 - MPMX20_00916 0.24 +0.5 965,872 - MPMX20_00916 0.24 -0.7 965,875 - MPMX20_00916 0.24 -0.2 965,877 - MPMX20_00916 0.25 +0.7 965,881 + MPMX20_00916 0.25 -0.6 965,913 + MPMX20_00916 0.29 +5.5 965,997 - MPMX20_00916 0.40 -2.1 966,006 + MPMX20_00916 0.41 -0.8 966,054 - MPMX20_00916 0.47 -0.8 966,149 - MPMX20_00916 0.59 -1.1 966,149 - MPMX20_00916 0.59 +1.2 966,149 - MPMX20_00916 0.59 -1.2 966,156 - MPMX20_00916 0.60 -1.4 966,156 - MPMX20_00916 0.60 -0.5 966,187 + MPMX20_00916 0.64 -1.1 966,188 - MPMX20_00916 0.64 -1.2 966,196 + MPMX20_00916 0.65 -1.0 966,214 + MPMX20_00916 0.67 -1.8 966,226 + MPMX20_00916 0.68 +0.5 966,276 + MPMX20_00916 0.75 -1.1 966,309 - MPMX20_00916 0.79 -0.7 966,359 + MPMX20_00916 0.85 -0.2 966,385 + MPMX20_00916 0.88 -0.1 966,414 + -1.0 966,542 - MPMX20_00917 0.11 -0.1 966,542 - MPMX20_00917 0.11 -1.3 966,550 - MPMX20_00917 0.13 -0.3 966,557 - MPMX20_00917 0.14 -1.5 966,557 - MPMX20_00917 0.14 +1.2 966,603 + MPMX20_00917 0.21 -1.7 966,603 + MPMX20_00917 0.21 -1.1 966,611 - MPMX20_00917 0.22 -2.5 966,611 - MPMX20_00917 0.22 -0.0 966,611 - MPMX20_00917 0.22 -0.6 966,611 - MPMX20_00917 0.22 -1.2 966,611 - MPMX20_00917 0.22 -3.5 966,627 + MPMX20_00917 0.25 +1.7 966,683 + MPMX20_00917 0.33 -0.1
Or see this region's nucleotide sequence