Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00902

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00900 and MPMX20_00901 are separated by 132 nucleotidesMPMX20_00901 and MPMX20_00902 are separated by 386 nucleotidesMPMX20_00902 and MPMX20_00903 overlap by 4 nucleotides MPMX20_00900: MPMX20_00900 - DNA polymerase III subunit epsilon, at 947,990 to 948,730 _00900 MPMX20_00901: MPMX20_00901 - tRNA-Asp, at 948,863 to 948,939 _00901 MPMX20_00902: MPMX20_00902 - Glc operon transcriptional activator, at 949,326 to 950,045 _00902 MPMX20_00903: MPMX20_00903 - Oligopeptide transport ATP-binding protein OppD, at 950,042 to 951,055 _00903 Position (kb) 949 950 951Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 948.967 kb on + strandat 948.980 kb on - strandat 949.343 kb on - strandat 949.374 kb on - strandat 949.410 kb on - strand, within MPMX20_00902at 949.442 kb on + strand, within MPMX20_00902at 949.450 kb on - strand, within MPMX20_00902at 949.456 kb on + strand, within MPMX20_00902at 949.516 kb on + strand, within MPMX20_00902at 949.524 kb on - strand, within MPMX20_00902at 949.550 kb on + strand, within MPMX20_00902at 949.550 kb on + strand, within MPMX20_00902at 949.632 kb on - strand, within MPMX20_00902at 949.682 kb on + strand, within MPMX20_00902at 949.687 kb on + strand, within MPMX20_00902at 949.695 kb on - strand, within MPMX20_00902at 949.760 kb on - strand, within MPMX20_00902at 949.825 kb on - strand, within MPMX20_00902at 949.840 kb on + strand, within MPMX20_00902at 949.980 kb on + strandat 950.006 kb on + strandat 950.006 kb on + strandat 950.009 kb on - strandat 950.014 kb on - strandat 950.040 kb on - strandat 950.070 kb on + strandat 950.073 kb on - strandat 950.073 kb on - strandat 950.080 kb on - strandat 950.112 kb on + strandat 950.120 kb on - strandat 950.184 kb on - strand, within MPMX20_00903at 950.219 kb on - strand, within MPMX20_00903at 950.373 kb on - strand, within MPMX20_00903at 950.373 kb on - strand, within MPMX20_00903at 950.384 kb on - strand, within MPMX20_00903at 950.395 kb on + strand, within MPMX20_00903at 950.408 kb on - strand, within MPMX20_00903at 950.473 kb on + strand, within MPMX20_00903at 950.474 kb on + strand, within MPMX20_00903at 950.482 kb on - strand, within MPMX20_00903at 950.599 kb on + strand, within MPMX20_00903at 950.607 kb on - strand, within MPMX20_00903at 950.614 kb on + strand, within MPMX20_00903at 950.637 kb on + strand, within MPMX20_00903at 950.645 kb on - strand, within MPMX20_00903at 950.647 kb on + strand, within MPMX20_00903at 950.647 kb on + strand, within MPMX20_00903at 950.647 kb on + strand, within MPMX20_00903at 950.655 kb on - strand, within MPMX20_00903at 950.655 kb on - strand, within MPMX20_00903at 950.655 kb on - strand, within MPMX20_00903at 950.655 kb on - strand, within MPMX20_00903at 950.655 kb on - strand, within MPMX20_00903at 950.655 kb on - strand, within MPMX20_00903at 950.708 kb on - strand, within MPMX20_00903at 950.762 kb on + strand, within MPMX20_00903at 950.762 kb on + strand, within MPMX20_00903at 950.767 kb on + strand, within MPMX20_00903at 950.770 kb on - strand, within MPMX20_00903at 950.770 kb on - strand, within MPMX20_00903at 950.803 kb on + strand, within MPMX20_00903at 950.803 kb on + strand, within MPMX20_00903at 950.811 kb on + strand, within MPMX20_00903at 950.811 kb on + strand, within MPMX20_00903at 950.811 kb on + strand, within MPMX20_00903at 950.811 kb on - strand, within MPMX20_00903at 950.819 kb on - strand, within MPMX20_00903at 950.819 kb on - strand, within MPMX20_00903at 950.819 kb on - strand, within MPMX20_00903at 950.819 kb on - strand, within MPMX20_00903at 950.926 kb on + strand, within MPMX20_00903at 950.991 kb on + strandat 951.028 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
remove
948,967 + -1.3
948,980 - -1.6
949,343 - -2.0
949,374 - -3.3
949,410 - MPMX20_00902 0.12 -0.5
949,442 + MPMX20_00902 0.16 +0.7
949,450 - MPMX20_00902 0.17 +0.5
949,456 + MPMX20_00902 0.18 -0.6
949,516 + MPMX20_00902 0.26 +3.0
949,524 - MPMX20_00902 0.28 -1.8
949,550 + MPMX20_00902 0.31 -1.4
949,550 + MPMX20_00902 0.31 +1.4
949,632 - MPMX20_00902 0.42 -1.1
949,682 + MPMX20_00902 0.49 +0.9
949,687 + MPMX20_00902 0.50 +2.1
949,695 - MPMX20_00902 0.51 -1.5
949,760 - MPMX20_00902 0.60 -2.0
949,825 - MPMX20_00902 0.69 -1.1
949,840 + MPMX20_00902 0.71 +3.9
949,980 + +0.9
950,006 + +0.5
950,006 + -1.1
950,009 - +1.0
950,014 - +1.0
950,040 - -0.7
950,070 + +0.3
950,073 - -2.3
950,073 - +0.2
950,080 - -1.1
950,112 + -2.4
950,120 - -2.1
950,184 - MPMX20_00903 0.14 -2.2
950,219 - MPMX20_00903 0.17 +0.9
950,373 - MPMX20_00903 0.33 +1.1
950,373 - MPMX20_00903 0.33 +1.5
950,384 - MPMX20_00903 0.34 -1.7
950,395 + MPMX20_00903 0.35 +0.0
950,408 - MPMX20_00903 0.36 -3.4
950,473 + MPMX20_00903 0.43 -0.2
950,474 + MPMX20_00903 0.43 +0.7
950,482 - MPMX20_00903 0.43 -0.8
950,599 + MPMX20_00903 0.55 +0.5
950,607 - MPMX20_00903 0.56 +0.3
950,614 + MPMX20_00903 0.56 -2.0
950,637 + MPMX20_00903 0.59 -0.6
950,645 - MPMX20_00903 0.59 -3.7
950,647 + MPMX20_00903 0.60 -2.3
950,647 + MPMX20_00903 0.60 +0.2
950,647 + MPMX20_00903 0.60 -0.7
950,655 - MPMX20_00903 0.60 +0.1
950,655 - MPMX20_00903 0.60 -1.1
950,655 - MPMX20_00903 0.60 -2.0
950,655 - MPMX20_00903 0.60 +0.4
950,655 - MPMX20_00903 0.60 -0.8
950,655 - MPMX20_00903 0.60 -0.4
950,708 - MPMX20_00903 0.66 -0.1
950,762 + MPMX20_00903 0.71 +0.2
950,762 + MPMX20_00903 0.71 -0.5
950,767 + MPMX20_00903 0.71 -0.8
950,770 - MPMX20_00903 0.72 -0.1
950,770 - MPMX20_00903 0.72 +0.5
950,803 + MPMX20_00903 0.75 -1.5
950,803 + MPMX20_00903 0.75 -0.2
950,811 + MPMX20_00903 0.76 -1.1
950,811 + MPMX20_00903 0.76 +0.3
950,811 + MPMX20_00903 0.76 -2.7
950,811 - MPMX20_00903 0.76 +0.5
950,819 - MPMX20_00903 0.77 +0.1
950,819 - MPMX20_00903 0.77 +1.7
950,819 - MPMX20_00903 0.77 +1.1
950,819 - MPMX20_00903 0.77 -2.4
950,926 + MPMX20_00903 0.87 -2.7
950,991 + -0.0
951,028 + -1.3

Or see this region's nucleotide sequence